SCRN1
gene geneOn this page
Also known as KIAA0193
Summary
SCRN1 (secernin 1, HGNC:22192) is a protein-coding gene on chromosome 7p14.3, encoding Secernin-1 (Q12765). Regulates exocytosis in mast cells.
This gene likely encodes a member of the secernin family of proteins. A similar protein in rat functions in regulation of exocytosis in mast cells. Alternatively spliced transcript variants have been described.
Source: NCBI Gene 9805 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 71 total
- MANE Select transcript:
NM_014766
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:22192 |
| Approved symbol | SCRN1 |
| Name | secernin 1 |
| Location | 7p14.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA0193 |
| Ensembl gene | ENSG00000136193 |
| Ensembl biotype | protein_coding |
| OMIM | 614965 |
| Entrez | 9805 |
Gene structure
Transcript identifiers
Ensembl transcripts: 18 — 17 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000242059, ENST00000409497, ENST00000409570, ENST00000421434, ENST00000425819, ENST00000426154, ENST00000434476, ENST00000438497, ENST00000494620, ENST00000631335, ENST00000866205, ENST00000866206, ENST00000866207, ENST00000866208, ENST00000866209, ENST00000866210, ENST00000866211, ENST00000955921
RefSeq mRNA: 4 — MANE Select: NM_014766
NM_001145513, NM_001145514, NM_001145515, NM_014766
CCDS: CCDS47567, CCDS47568, CCDS5422
Canonical transcript exons
ENST00000242059 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001623519 | 29936556 | 29936721 |
| ENSE00001686868 | 29940682 | 29940876 |
| ENSE00001696704 | 29943977 | 29944179 |
| ENSE00001731841 | 29926452 | 29926632 |
| ENSE00001835098 | 29989642 | 29989801 |
| ENSE00001916752 | 29920109 | 29924115 |
| ENSE00003478634 | 29955179 | 29955360 |
| ENSE00003668151 | 29968909 | 29969068 |
Expression profiles
Bgee: expression breadth ubiquitous, 283 present calls, max score 99.57.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 24.9801 / max 255.3586, expressed in 1636 samples.
FANTOM5 promoters (9 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 83417 | 21.3065 | 1620 |
| 83418 | 1.7375 | 991 |
| 83416 | 1.0973 | 636 |
| 83419 | 0.4041 | 207 |
| 204403 | 0.1471 | 52 |
| 83415 | 0.1113 | 52 |
| 83413 | 0.0859 | 42 |
| 83414 | 0.0740 | 27 |
| 83420 | 0.0165 | 8 |
Top tissues by expression
294 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| trigeminal ganglion | UBERON:0001675 | 99.57 | gold quality |
| cerebellar vermis | UBERON:0004720 | 99.55 | gold quality |
| ventricular zone | UBERON:0003053 | 99.50 | gold quality |
| pons | UBERON:0000988 | 99.48 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 99.47 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 99.42 | gold quality |
| olfactory bulb | UBERON:0002264 | 99.36 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 99.34 | gold quality |
| paraflocculus | UBERON:0005351 | 99.31 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 99.26 | gold quality |
| ventral tegmental area | UBERON:0002691 | 99.24 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 99.19 | gold quality |
| medulla oblongata | UBERON:0001896 | 99.18 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 99.08 | gold quality |
| ganglionic eminence | UBERON:0004023 | 98.98 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 98.89 | gold quality |
| cranial nerve II | UBERON:0000941 | 98.77 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 98.65 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 98.60 | gold quality |
| parietal lobe | UBERON:0001872 | 98.57 | gold quality |
| cerebellum | UBERON:0002037 | 98.56 | gold quality |
| frontal pole | UBERON:0002795 | 98.52 | gold quality |
| cerebellar cortex | UBERON:0002129 | 98.46 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 98.43 | gold quality |
| postcentral gyrus | UBERON:0002581 | 98.42 | gold quality |
| corpus callosum | UBERON:0002336 | 98.41 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 98.32 | gold quality |
| midbrain | UBERON:0001891 | 98.27 | gold quality |
| inferior olivary complex | UBERON:0002127 | 98.25 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 98.25 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-13 | yes | 8.46 |
| E-ANND-3 | yes | 4.78 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
82 targeting SCRN1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-188-3P | 100.00 | 68.76 | 1240 |
| HSA-MIR-499A-5P | 99.98 | 70.79 | 1323 |
| HSA-MIR-493-5P | 99.96 | 72.47 | 2382 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-6835-3P | 99.93 | 70.49 | 2904 |
| HSA-MIR-5680 | 99.91 | 69.83 | 3421 |
| HSA-MIR-8063 | 99.91 | 69.76 | 3146 |
| HSA-MIR-8087 | 99.90 | 69.55 | 1351 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-MIR-3156-3P | 99.76 | 66.72 | 939 |
| HSA-MIR-6752-3P | 99.72 | 66.71 | 1587 |
| HSA-MIR-4306 | 99.72 | 70.50 | 3630 |
| HSA-MIR-646 | 99.68 | 67.84 | 1645 |
| HSA-MIR-10394-5P | 99.65 | 66.83 | 1852 |
| HSA-MIR-1205 | 99.65 | 66.76 | 1826 |
| HSA-MIR-6516-3P | 99.65 | 68.57 | 1238 |
| HSA-MIR-1303 | 99.65 | 69.77 | 1662 |
| HSA-MIR-1251-3P | 99.64 | 67.21 | 1408 |
| HSA-MIR-7150 | 99.62 | 66.80 | 1322 |
| HSA-MIR-1260A | 99.61 | 66.67 | 1098 |
| HSA-MIR-1260B | 99.61 | 66.67 | 1098 |
| HSA-MIR-4261 | 99.59 | 70.30 | 3415 |
| HSA-MIR-4328 | 99.57 | 71.06 | 4094 |
| HSA-MIR-2053 | 99.57 | 69.15 | 1635 |
Literature-anchored findings (GeneRIF, showing 10)
- Purified and identified bovine secernin, in addition to bioinformatics analysis of similar proteins in mouse, rat and human. (PMID:12221138)
- SCRN1 expression is a prognostic factor in colorectal cancer patients (PMID:20039278)
- This protein has been found differentially expressed in the anterior cingulate cortex from patients with schizophrenia (PMID:20381070)
- in synovial sarcoma, metastasis-free survival was significantly higher in the group with high secernin-1 expression compared to low expression; results indicate secernin-1 may be used as a biomarker to predict overall and metastasis-free survival (PMID:21385630)
- A protein encoded by this locus was found to be differentially expressed in postmortem brains from patients with atypical frontotemporal lobar degeneration. (PMID:22360420)
- Luciferase report assay showed that the rs6976789 variant T allele influenced the binding ability of miR-148a. Our results suggested that the SCRN1 rs6976789 polymorphism may play an important role in the GC development and progression (PMID:25399950)
- Upregulation of SCRN1 is associated with acquired resistance to erlotinib in non-small cell lung cancer. (PMID:26883194)
- Secernin-1 is a novel phosphorylated tau binding protein that accumulates in Alzheimer’s disease and not in other tauopathies. (PMID:31796108)
- SCRN1: A cerebrospinal fluid biomarker correlating with tau in Alzheimer’s disease. (PMID:36946611)
- Knockdown of Secernin 1 inhibit cell invasion and migration by activating the TGF-beta/Smad3 pathway in oral squamous cell carcinomas. (PMID:37691034)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Scrn1 | ENSMUSG00000019124 |
| rattus_norvegicus | Scrn1 | ENSRNOG00000009636 |
| drosophila_melanogaster | CG10098 | FBGN0037472 |
Paralogs (2): SCRN2 (ENSG00000141295), SCRN3 (ENSG00000144306)
Protein
Protein identifiers
Secernin-1 — Q12765 (reviewed: Q12765)
All UniProt accessions (5): A0A090N7T9, B8ZZP4, C9J7U9, C9K052, Q12765
UniProt curated annotations — full annotation on UniProt →
Function. Regulates exocytosis in mast cells. Increases both the extent of secretion and the sensitivity of mast cells to stimulation with calcium.
Subcellular location. Cytoplasm.
Miscellaneous. ‘Secern’ is an archaic English term meaning ‘secrete’.
Similarity. Belongs to the peptidase C69 family. Secernin subfamily.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q12765-1 | 1 | yes |
| Q12765-2 | 2 | |
| Q12765-3 | 3 |
RefSeq proteins (4): NP_001138985, NP_001138986, NP_001138987, NP_055581* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR005322 | Peptidase_C69 | Family |
Pfam: PF03577
UniProt features (10 total): splice variant 2, sequence variant 2, sequence conflict 2, initiator methionine 1, chain 1, active site 1, modified residue 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q12765-F1 | 94.17 | 0.86 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 9
Post-translational modifications (1): 2
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 174 (showing top):
GSE45365_CTRL_VS_MCMV_INFECTION_NK_CELL_DN, VERHAAK_AML_WITH_NPM1_MUTATED_DN, GOZGIT_ESR1_TARGETS_DN, RACCACAR_AML_Q6, GOBP_VESICLE_MEDIATED_TRANSPORT, TOMLINS_PROSTATE_CANCER_DN, CAGCTG_AP4_Q5, GOBP_REGULATION_OF_VESICLE_MEDIATED_TRANSPORT, MODULE_66, MARTORIATI_MDM4_TARGETS_NEUROEPITHELIUM_DN, GOBP_EXOCYTOSIS, AML_Q6, SHEDDEN_LUNG_CANCER_GOOD_SURVIVAL_A4, YY1_02, GOMF_CYSTEINE_TYPE_PEPTIDASE_ACTIVITY
GO Biological Process (3): proteolysis (GO:0006508), exocytosis (GO:0006887), regulation of synaptic vesicle cycle (GO:0098693)
GO Molecular Function (3): dipeptidase activity (GO:0016805), cysteine-type exopeptidase activity (GO:0070004), protein binding (GO:0005515)
GO Cellular Component (4): nucleus (GO:0005634), cytoplasm (GO:0005737), nuclear membrane (GO:0031965), presynapse (GO:0098793)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| exopeptidase activity | 2 |
| cellular anatomical structure | 2 |
| protein metabolic process | 1 |
| vesicle-mediated transport | 1 |
| secretion by cell | 1 |
| vesicle fusion to plasma membrane | 1 |
| regulation of vesicle-mediated transport | 1 |
| synaptic vesicle cycle | 1 |
| cysteine-type peptidase activity | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| nucleus | 1 |
| nuclear envelope | 1 |
| organelle membrane | 1 |
| synapse | 1 |
Protein interactions and networks
STRING
684 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SCRN1 | VAPA | Q9P0L0 | 606 |
| SCRN1 | VWA8 | A3KMH1 | 547 |
| SCRN1 | CIBAR1 | A1XBS5 | 544 |
| SCRN1 | FSD1 | Q9BTV5 | 521 |
| SCRN1 | CLHC1 | Q8NHS4 | 521 |
| SCRN1 | NAA30 | Q147X3 | 423 |
| SCRN1 | ENKD1 | Q9H0I2 | 417 |
| SCRN1 | RHOC | P08134 | 388 |
| SCRN1 | CD34 | P28906 | 388 |
| SCRN1 | BCL7A | Q4VC05 | 370 |
| SCRN1 | MARK1 | Q9P0L2 | 370 |
| SCRN1 | GUF1 | Q8N442 | 357 |
| SCRN1 | OR4F21 | O95013 | 325 |
| SCRN1 | ZNF487 | B1APH4 | 321 |
| SCRN1 | GARIN5A | Q6IPT2 | 310 |
IntAct
34 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SCRN1 | MAPT | psi-mi:“MI:0915”(physical association) | 0.620 |
| POPDC3 | SCRN1 | psi-mi:“MI:0915”(physical association) | 0.590 |
| SCRN1 | GORASP1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GORASP1 | SCRN1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SCRN1 | CCDC85C | psi-mi:“MI:0914”(association) | 0.530 |
| CCDC121 | SCRN1 | psi-mi:“MI:0914”(association) | 0.530 |
| SNRNP27 | UBA6 | psi-mi:“MI:0914”(association) | 0.530 |
| ARL6IP6 | YKT6 | psi-mi:“MI:0914”(association) | 0.530 |
| CDK5R1 | DENR | psi-mi:“MI:0914”(association) | 0.530 |
| CTSZ | SCRN1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| FGB | NME2 | psi-mi:“MI:0914”(association) | 0.350 |
| CUL4B | GGTLC3 | psi-mi:“MI:0914”(association) | 0.350 |
| MAPT | SEPTIN8 | psi-mi:“MI:0914”(association) | 0.350 |
| MAPT | SHTN1 | psi-mi:“MI:0914”(association) | 0.350 |
| SHANK3 | IGKV3D-15 | psi-mi:“MI:0914”(association) | 0.350 |
| DYRK1A | TEX13D | psi-mi:“MI:0914”(association) | 0.350 |
| MBD5 | NME2P1 | psi-mi:“MI:0914”(association) | 0.350 |
| FCGR2A | STAMBP | psi-mi:“MI:0914”(association) | 0.350 |
| FBXO25 | ARHGAP1 | psi-mi:“MI:0914”(association) | 0.350 |
| MFI | SCRN1 | psi-mi:“MI:0914”(association) | 0.350 |
| DNAJB6 | SCAMP1 | psi-mi:“MI:0914”(association) | 0.350 |
| SCRN2 | IFI30 | psi-mi:“MI:0914”(association) | 0.350 |
| COX10 | SUOX | psi-mi:“MI:0914”(association) | 0.350 |
| TNFRSF11B | SCRN1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (72): GORASP1 (Two-hybrid), TAB2 (Affinity Capture-MS), TAB1 (Affinity Capture-MS), CD3EAP (Affinity Capture-MS), MAP3K7 (Affinity Capture-MS), CCDC85C (Affinity Capture-MS), DENND4A (Affinity Capture-MS), CTU1 (Affinity Capture-MS), SCRN1 (Affinity Capture-MS), SCRN1 (Affinity Capture-MS), VAPA (Affinity Capture-MS), SCRN1 (Affinity Capture-MS), SCRN1 (Affinity Capture-MS), SCRN1 (Two-hybrid), ZNF25 (Two-hybrid)
ESM2 similar proteins: A2AV36, A2VD33, A4IG42, A4IG53, A5PJN5, A6QLU7, E9PYK3, F4JVN6, G1T7U7, H0VCJ6, O95050, O95497, P42700, P42898, P51687, P79106, P83006, P83939, Q02083, Q0V984, Q0VDG4, Q0ZHH6, Q12765, Q17QS0, Q1LWG4, Q3TMH2, Q58CQ9, Q5KTC7, Q5R8R3, Q5TYS5, Q5XH17, Q60HE5, Q6AY84, Q6DD88, Q7Z3D6, Q803W1, Q84VX0, Q8BNE1, Q8R086, Q8VDG7
Diamond homologs: P83939, Q0V984, Q0VDG4, Q12765, Q17QS0, Q3TMH2, Q5TYS5, Q5XH17, Q6AY84, Q6AYR8, Q803W1, Q8VCA8, Q96FV2, Q9CZC8
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
71 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 54 |
| Likely benign | 3 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1637 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:29923954:A:AC | donor_gain | 1.0000 |
| 7:29923954:ACTT:A | donor_gain | 1.0000 |
| 7:29923955:C:CT | donor_gain | 1.0000 |
| 7:29923955:CTT:C | donor_gain | 1.0000 |
| 7:29923955:CTTC:C | donor_gain | 1.0000 |
| 7:29923955:CTTCA:C | donor_gain | 1.0000 |
| 7:29923957:T:TA | donor_gain | 1.0000 |
| 7:29923963:A:AC | donor_gain | 1.0000 |
| 7:29923972:A:AC | donor_gain | 1.0000 |
| 7:29923972:AAT:A | donor_gain | 1.0000 |
| 7:29923972:AATCT:A | donor_gain | 1.0000 |
| 7:29924012:T:TA | donor_gain | 1.0000 |
| 7:29924013:C:A | donor_gain | 1.0000 |
| 7:29926448:TCA:T | donor_loss | 1.0000 |
| 7:29926450:ACCTG:A | donor_loss | 1.0000 |
| 7:29926451:C:CG | donor_loss | 1.0000 |
| 7:29926451:CCTGG:C | donor_gain | 1.0000 |
| 7:29943973:TCACC:T | donor_loss | 1.0000 |
| 7:29943974:CA:C | donor_loss | 1.0000 |
| 7:29943976:C:CT | donor_loss | 1.0000 |
| 7:29944004:T:TA | donor_gain | 1.0000 |
| 7:29944005:C:A | donor_gain | 1.0000 |
| 7:29955356:GTGCA:G | acceptor_gain | 1.0000 |
| 7:29955357:TGCA:T | acceptor_gain | 1.0000 |
| 7:29955358:GCA:G | acceptor_gain | 1.0000 |
| 7:29955358:GCAC:G | acceptor_loss | 1.0000 |
| 7:29955359:CA:C | acceptor_gain | 1.0000 |
| 7:29955359:CAC:C | acceptor_gain | 1.0000 |
| 7:29955361:C:CC | acceptor_gain | 1.0000 |
| 7:29955362:T:G | acceptor_loss | 1.0000 |
AlphaMissense
2753 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:29926620:C:A | K306N | 0.997 |
| 7:29926620:C:G | K306N | 0.997 |
| 7:29936630:A:C | S277R | 0.996 |
| 7:29936630:A:T | S277R | 0.996 |
| 7:29936632:T:G | S277R | 0.996 |
| 7:29923985:A:T | V406D | 0.994 |
| 7:29926631:A:G | S303P | 0.993 |
| 7:29936685:C:G | R259P | 0.992 |
| 7:29955297:A:G | W75R | 0.991 |
| 7:29955297:A:T | W75R | 0.991 |
| 7:29955189:C:G | D111H | 0.990 |
| 7:29926622:T:C | K306E | 0.989 |
| 7:29955288:C:G | G78R | 0.989 |
| 7:29955288:C:T | G78R | 0.989 |
| 7:29926623:G:C | F305L | 0.988 |
| 7:29926623:G:T | F305L | 0.988 |
| 7:29926625:A:G | F305L | 0.988 |
| 7:29955287:C:T | G78E | 0.987 |
| 7:29955307:G:C | S71R | 0.987 |
| 7:29955307:G:T | S71R | 0.987 |
| 7:29955309:T:G | S71R | 0.987 |
| 7:29968994:C:T | G25E | 0.987 |
| 7:29969036:A:T | V11D | 0.987 |
| 7:29926624:A:G | F305S | 0.986 |
| 7:29944179:C:A | R114S | 0.986 |
| 7:29944179:C:G | R114S | 0.986 |
| 7:29955268:A:C | N84K | 0.986 |
| 7:29955268:A:T | N84K | 0.986 |
| 7:29926614:G:C | F308L | 0.985 |
| 7:29926614:G:T | F308L | 0.985 |
dbSNP variants (sampled 300 via entrez): RS1000114990 (7:29979831 A>G), RS1000136056 (7:29980813 A>G), RS1000155865 (7:29990833 C>G,T), RS1000182312 (7:29930305 C>T), RS1000233207 (7:29974487 A>G), RS1000236999 (7:29960703 TACACACACACACATCC>T,TACACACACACACATCCACACACACACACATCC), RS1000275506 (7:29941240 C>T), RS1000328144 (7:29985847 T>C), RS1000337749 (7:29953430 C>T), RS1000346586 (7:29986046 C>T), RS1000384677 (7:29991528 G>C), RS1000439120 (7:29967748 C>A,T), RS1000468352 (7:29919806 C>G), RS1000560717 (7:29947782 G>T), RS1000696349 (7:29968170 T>C)
Disease associations
OMIM: gene MIM:614965 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): prostate cancer (MONDO:0008315)
Orphanet (1): Familial prostate cancer (Orphanet:1331)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001762_941 | Obesity-related traits | 9.000000e-06 |
| GCST008479_24 | Psoriasis | 4.000000e-53 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005189 | respiratory quotient |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
47 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression, affects expression, decreases expression | 4 |
| Aflatoxin B1 | increases expression | 3 |
| bisphenol A | increases expression | 2 |
| Decitabine | affects expression, increases expression | 2 |
| Air Pollutants | affects expression, increases abundance, decreases expression | 2 |
| Benzo(a)pyrene | affects methylation, decreases methylation, increases expression | 2 |
| Cisplatin | affects expression, affects response to substance | 2 |
| Cyclosporine | decreases expression, increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| methyleugenol | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| cobaltous chloride | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| ochratoxin A | increases expression | 1 |
| azoxystrobin | decreases expression | 1 |
| deguelin | decreases expression | 1 |
| entinostat | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| pyrimidifen | decreases expression | 1 |
| ICG 001 | increases expression | 1 |
| bisphenol B | increases expression | 1 |
| abrine | increases expression | 1 |
| LDN 193189 | affects cotreatment, increases expression | 1 |
| picoxystrobin | decreases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Vorinostat | decreases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Atrazine | increases expression | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00029224 | PHASE4 | COMPLETED | Treatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions |
| NCT00035997 | PHASE4 | COMPLETED | Open-label Trial on the Effect of I.V. Zoledronic Acid 4 mg on Bone Density in Hormone Sensitive Prostate Cancer Patients With Bone Metastasis |
| NCT00063609 | PHASE4 | COMPLETED | The Effect of Zoledronic Acid on Bone Loss in Prostate Cancer Patients Undergoing Androgen Deprivation Therapy |
| NCT00103623 | PHASE4 | SUSPENDED | The Plenaxis® Experience Study |
| NCT00106392 | PHASE4 | COMPLETED | A Safety and Efficacy Study of Prograf in the Prevention of Erectile Dysfunction After Radical Prostatectomy |
| NCT00185029 | PHASE4 | UNKNOWN | MR-Lymphography and Lymph Node Staging in Prostate Cancer |
| NCT00199485 | PHASE4 | COMPLETED | Angelica Sinensis for the Treatment of Hot Flashes in Men Undergoing LHRH Therapy for Prostate Cancer |
| NCT00219219 | PHASE4 | COMPLETED | Zoledronic Acid in the Prevention of Skeletal-related Events in Hormone Refractory and Hormone-sensitive Prostate Cancer Patients With Bone Metastases |
| NCT00219271 | PHASE4 | COMPLETED | Effect Of Zoledronic Acid On Circulating And Bone Marrow-Residing Prostate Cancer Cells In Patients With Clinically Localized Prostate Cancer |
| NCT00237146 | PHASE4 | COMPLETED | Study to Evaluate Zoledronic Acid on Quality of Life and Skeletal-related Events as Adjuvant Treatment in Patients With Hormone-naïve Prostate Cancer and Bone Metastasis Who Have Undergone Orchiectomy |
| NCT00242554 | PHASE4 | COMPLETED | Open-label Phase IV Clinical Trial to Evaluate the Safety and Tolerability of Zoledronic Acid in Patients With Prostate Cancer and Bone Metastases |
| NCT00280098 | PHASE4 | COMPLETED | Docetaxel in the Treatment of Hormone Refractory Prostate Cancer |
| NCT00293696 | PHASE4 | COMPLETED | Casodex/Zoladex Biomarkers in Localised Prostate Cancer |
| NCT00334139 | PHASE4 | COMPLETED | Effect of Zoledronic Acid on Bone Metabolism in Patients With Bone Metastasis and Prostate or Breast Cancer |
| NCT00375765 | PHASE4 | COMPLETED | Effects On Dihydrotestosterone Regulated Gene Expression In Benign Prostatic Hyperplasia Or Prostate Cancer |
| NCT00391690 | PHASE4 | COMPLETED | Evaluation of Bone Markers as Diagnostic Tools for Early Detection of Bone Metastases in Patients With High Risk Prostate Cancer |
| NCT00422708 | PHASE4 | COMPLETED | Local Anesthesia for Prostate Biopsy |
| NCT00526331 | PHASE4 | COMPLETED | Evaluation of Arterial Pressure Based Cardiac Output for Goal-Directed Perioperative Therapy |
| NCT00590213 | PHASE4 | COMPLETED | Compare the Value of Prophylactic Versus Therapeutic Breast Radiotherapy in CASODEX |
| NCT00629330 | PHASE4 | TERMINATED | Dissemination of Prostate Cancer Screening to PCP’s in African American Communities |
| NCT00771966 | PHASE4 | COMPLETED | Radical Prostatectomy and Perioperative Fluid Therapy |
| NCT00805701 | PHASE4 | COMPLETED | Study Assessing The Efficacy And Safety Of Avodart (Dutasteride) At Improving Urinary Symptoms In Men With Prostate Cancer Who Are Undergoing Seed Implantation |
| NCT00859027 | PHASE4 | COMPLETED | Effect Of Risedronate On Bone Mass In Older Men Receiving Neoadjuvant Therapy For Prostate Cancer |
| NCT00906269 | PHASE4 | UNKNOWN | Can Hyperbaric Oxygen Improve Erectile Function Following Surgery for Prostate Cancer |
| NCT00953277 | PHASE4 | COMPLETED | Study of Nerve Reconstruction Using AVANCE in Subjects Who Undergo Robotic Assisted Prostatectomy for Treatment of Prostate Cancer |
| NCT00982800 | PHASE4 | COMPLETED | Does Postoperative Gabapentin Reduce Pain, Opioid Consumption and Anxiety and Have a Positive Effect on Health Related Quality of Life After Radical Prostatectomy? |
| NCT01083199 | PHASE4 | COMPLETED | Global Performance Evaluation of the AMS CONTINUUM™ Device |
| NCT01136226 | PHASE4 | COMPLETED | Evaluate Recovery of Testosterone for Patients Using Eligard |
| NCT01161563 | PHASE4 | COMPLETED | Randomized Crossover Trial to Assess the Tolerability of Gonadotropin Releasing Hormone (GnRH) Analogue Administration |
| NCT01230905 | PHASE4 | COMPLETED | Study to Monitor the Effects of Androgen Suppression Treatment on the Heart |
| NCT01296672 | PHASE4 | COMPLETED | 3 Month Finasteride Challenge Test Can Significantly Improve the Performance of Screening for Prostate Cancer |
| NCT01365143 | PHASE4 | TERMINATED | Prospective Randomized Trial Comparing Robotic Versus Open Radical Prostatectomy |
| NCT01379742 | PHASE4 | UNKNOWN | Comparison of Between ThinSeed™ and OncoSeed™ for Permanent Prostate Brachytherapy |
| NCT01486563 | PHASE4 | COMPLETED | Hydroxyethyl Starch and Renal Function After Radical Prostatectomy |
| NCT01511874 | PHASE4 | COMPLETED | Efficacy and Safety Study of ELIGARD 22.5mg With Prostate Cancer |
| NCT01512472 | PHASE4 | TERMINATED | Firmagon (Degarelix) Intermittent Therapy |
| NCT01547416 | PHASE4 | COMPLETED | The Effect of Combined General/Epidural Anesthesia Versus General Anesthesia on Diaphragmatic Function |
| NCT01571544 | PHASE4 | COMPLETED | The Use of Thermal Suits as Preventing Hypothermia During Surgery |
| NCT01581749 | PHASE4 | UNKNOWN | Evaluation of Truebeam for Low-Intermediate Risk Prostate Cancer |
| NCT01649635 | PHASE4 | COMPLETED | Study of Cabazitaxel Combined With Prednisone and Prophylaxis of Neutropenia Complications in the Treatment of Patients With Metastatic Castration-resistant Prostate Cancer |
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.