SCUBE3-AS1

Summary

SCUBE3-AS1 (SCUBE3 antisense RNA 1, HGNC:56671) is a long non-coding RNA gene on chromosome 6p21.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56671
Approved symbol	SCUBE3-AS1
Name	SCUBE3 antisense RNA 1
Location	6p21.31
Locus type	RNA, long non-coding
Status	Approved
Aliases	Z97832.2
Ensembl gene	ENSG00000272374
Ensembl biotype	lncRNA
Entrez	101929285
RNAcentral	URS00002CA93E — lncRNA, 4261 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000605896

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000605896 — 1 exons

Exon	Start	End
ENSE00003697330	35220370	35224630

Expression profiles

Bgee: expression breadth ubiquitous, 181 present calls, max score 86.18.

Top tissues by expression

226 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	86.18	silver quality
epithelial cell of pancreas	CL:0000083	84.24	gold quality
tendon of biceps brachii	UBERON:0008188	83.78	gold quality
nasal cavity epithelium	UBERON:0005384	83.53	gold quality
parotid gland	UBERON:0001831	82.92	gold quality
vena cava	UBERON:0004087	82.49	silver quality
bone marrow cell	CL:0002092	80.13	gold quality
kidney epithelium	UBERON:0004819	79.56	gold quality
upper arm skin	UBERON:0004263	78.71	gold quality
pancreatic ductal cell	CL:0002079	78.53	silver quality
middle temporal gyrus	UBERON:0002771	78.08	silver quality
Brodmann (1909) area 23	UBERON:0013554	76.11	silver quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	75.92	gold quality
globus pallidus	UBERON:0001875	75.71	silver quality
pericardium	UBERON:0002407	74.82	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	74.57	gold quality
cardiac muscle of right atrium	UBERON:0003379	74.42	gold quality
left ventricle myocardium	UBERON:0006566	74.37	gold quality
cardia of stomach	UBERON:0001162	74.27	silver quality
pylorus	UBERON:0001166	74.21	silver quality
trachea	UBERON:0003126	73.92	silver quality
superior surface of tongue	UBERON:0007371	73.82	silver quality
cartilage tissue	UBERON:0002418	73.71	silver quality
pigmented layer of retina	UBERON:0001782	73.70	silver quality
endothelial cell	CL:0000115	73.66	gold quality
pons	UBERON:0000988	73.23	silver quality
saphenous vein	UBERON:0007318	73.23	silver quality
lateral globus pallidus	UBERON:0002476	73.15	silver quality
skeletal muscle tissue	UBERON:0001134	73.12	silver quality
medulla oblongata	UBERON:0001896	73.06	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.48

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.