SDHB
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Summary
SDHB (succinate dehydrogenase complex iron sulfur subunit B, HGNC:10681) is a protein-coding gene on chromosome 1p36.13, encoding Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial (P21912). Iron-sulfur protein (IP) subunit of the succinate dehydrogenase complex (mitochondrial respiratory chain complex II), responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). It is a selective cancer dependency (DepMap: 45.1% of cell lines) and haploinsufficient (ClinGen: sufficient evidence).
This tumor suppressor gene encodes the iron-sulfur protein subunit of the succinate dehydrogenase (SDH) enzyme complex which plays a critical role in mitochondria. The SDH enzyme complex is composed of four nuclear-encoded subunits. This enzyme complex converts succinate to fumarate which releases electrons as part of the citric acid cycle, and the enzyme complex additionally provides an attachment site for released electrons to be transferred to the oxidative phosphorylation pathway. The SDH enzyme complex plays a role in oxygen-related gene regulation through its conversion of succinate, which is an oxygen sensor that stabilizes the hypoxia-inducible factor 1 (HIF1) transcription factor. Sporadic and familial mutations in this gene result in paragangliomas, pheochromocytoma, and gastrointestinal stromal tumors, supporting a link between mitochondrial dysfunction and tumorigenesis. Mutations in this gene are also implicated in nuclear type 4 mitochondrial complex II deficiency.
Source: NCBI Gene 6390 — RefSeq curated summary.
At a glance
- Gene–disease (curated): mitochondrial disease (Definitive, ClinGen) — +9 more curated relationships
- GWAS associations: 24
- Clinical variants (ClinVar): 1,581 total — 189 pathogenic, 65 likely-pathogenic
- Phenotypes (HPO): 214
- Druggable target: yes
- Cancer dependency (DepMap): dependent in 45.1% of screened cell lines
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_003000
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:10681 |
| Approved symbol | SDHB |
| Name | succinate dehydrogenase complex iron sulfur subunit B |
| Location | 1p36.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000117118 |
| Ensembl biotype | protein_coding |
| OMIM | 185470 |
| Entrez | 6390 |
Gene structure
Transcript identifiers
Ensembl transcripts: 19 — 9 protein_coding, 6 nonsense_mediated_decay, 3 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000375499, ENST00000463045, ENST00000466613, ENST00000475049, ENST00000475506, ENST00000485092, ENST00000485515, ENST00000491274, ENST00000714029, ENST00000714030, ENST00000714031, ENST00000714032, ENST00000714033, ENST00000714034, ENST00000714035, ENST00000714036, ENST00000714037, ENST00000714038, ENST00000925621
RefSeq mRNA: 2 — MANE Select: NM_003000
NM_001407361, NM_003000
CCDS: CCDS176
Canonical transcript exons
ENST00000375499 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003598239 | 17033060 | 17033145 |
| ENSE00003681743 | 17028600 | 17028736 |
| ENSE00003728285 | 17044761 | 17044888 |
| ENSE00003786914 | 17027749 | 17027865 |
| ENSE00003791578 | 17023973 | 17024074 |
| ENSE00004013903 | 17022608 | 17022730 |
| ENSE00004022584 | 17018722 | 17018958 |
| ENSE00004022595 | 17053948 | 17054032 |
Expression profiles
Bgee: expression breadth ubiquitous, 293 present calls, max score 98.96.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 75.8158 / max 515.5937, expressed in 1827 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 10569 | 64.9730 | 1826 |
| 10570 | 6.2862 | 1735 |
| 10571 | 4.3962 | 1668 |
| 10568 | 0.1375 | 71 |
| 10567 | 0.0167 | 2 |
| 10566 | 0.0062 | 2 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| heart left ventricle | UBERON:0002084 | 98.96 | gold quality |
| cardiac ventricle | UBERON:0002082 | 98.94 | gold quality |
| apex of heart | UBERON:0002098 | 98.88 | gold quality |
| gastrocnemius | UBERON:0001388 | 98.82 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 98.82 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 98.80 | gold quality |
| muscle of leg | UBERON:0001383 | 98.71 | gold quality |
| heart right ventricle | UBERON:0002080 | 98.71 | gold quality |
| right atrium auricular region | UBERON:0006631 | 98.67 | gold quality |
| muscle organ | UBERON:0001630 | 98.59 | gold quality |
| right lobe of liver | UBERON:0001114 | 98.54 | gold quality |
| heart | UBERON:0000948 | 98.49 | gold quality |
| vastus lateralis | UBERON:0001379 | 98.45 | gold quality |
| biceps brachii | UBERON:0001507 | 98.45 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 98.45 | gold quality |
| rectum | UBERON:0001052 | 98.44 | gold quality |
| cardiac atrium | UBERON:0002081 | 98.44 | gold quality |
| body of tongue | UBERON:0011876 | 98.42 | gold quality |
| diaphragm | UBERON:0001103 | 98.28 | gold quality |
| quadriceps femoris | UBERON:0001377 | 98.23 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 98.20 | gold quality |
| transverse colon | UBERON:0001157 | 98.20 | gold quality |
| right adrenal gland | UBERON:0001233 | 98.03 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 98.00 | gold quality |
| left adrenal gland | UBERON:0001234 | 97.95 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 97.87 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 97.87 | gold quality |
| triceps brachii | UBERON:0001509 | 97.85 | gold quality |
| body of stomach | UBERON:0001161 | 97.79 | gold quality |
| jejunal mucosa | UBERON:0000399 | 97.73 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-11 | no | 380.49 |
| E-MTAB-6524 | no | 228.89 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AHR, HIF1A, NFE2L2, NFYA, NRF1, PLAGL1
miRNA regulators (miRDB)
44 targeting SDHB, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-4487 | 99.96 | 64.58 | 1252 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
| HSA-MIR-548A-5P | 99.94 | 71.27 | 3482 |
| HSA-MIR-548AD-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AE-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548AK | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AM-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AP-5P | 99.94 | 71.14 | 3489 |
| HSA-MIR-548AQ-5P | 99.94 | 71.34 | 3426 |
| HSA-MIR-548AR-5P | 99.94 | 71.28 | 3515 |
| HSA-MIR-548AS-5P | 99.94 | 71.22 | 3482 |
| HSA-MIR-548AU-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548AY-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548B-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548BB-5P | 99.94 | 71.27 | 3509 |
| HSA-MIR-548C-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548D-5P | 99.94 | 71.23 | 3502 |
| HSA-MIR-548H-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548I | 99.94 | 71.25 | 3481 |
| HSA-MIR-548J-5P | 99.94 | 71.14 | 3489 |
| HSA-MIR-548O-5P | 99.94 | 71.24 | 3488 |
| HSA-MIR-548W | 99.94 | 71.24 | 3488 |
| HSA-MIR-548Y | 99.94 | 71.28 | 3514 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-129-5P | 99.88 | 70.26 | 3273 |
| HSA-MIR-6124 | 99.87 | 69.78 | 3551 |
Functional genomics
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
DepMap (CRISPR cell-line fitness): dependent in 45.1% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 40)
- Prevalence of SDHB, SDHC, and SDHD germline mutations in clinic patients with head and neck paragangliomas (PMID:11897817)
- Participation of the iron-sulfur protein subunit of SDHB in development of susceptibility to familial pheochromocytoma is reconfirmed by a familial case with a germline mutation. (PMID:12362046)
- Review. Succinate dehydrogenase catalyses a step in the Krebs tricarboxylic-acid cycle. Inherited heterozygous mutations in the gene encoding this enzyme causes a predisposition to inherited neoplasia syndromes. (PMID:12612654)
- SDHB has a major role in the pathogenesis of familial phaeochromocytomas, but the possible role of SDHB in sporadic tumours showing allelic loss at 1p36 has yet to be ascertained. (PMID:12618761)
- protein expression of the iron-sulfur subunit responds to the cellular iron level, thereby influencing mitochondrial respiratory function and cellular growth. (PMID:14512425)
- Germline SDHB mutations can predispose to early-onset kidney cancers in addition to paragangliomas (PMID:14685938)
- In patients with pheochromocytoma or functional paraganglioma with an SDHB mutation, the tumors were larger, more frequently extra-adrenal, and malignant. (PMID:16314641)
- A possible role for SDH polymorphism as susceptibility/disease modifying factors in familial and sporadic medullary thyroid carcinomas was shown. (PMID:16322339)
- Germline mutations of SDHB play a minor role in sporadic head and neck paraganglioma. (PMID:16405730)
- In patients with pheochromocytoma or functional paraganglioma with an SDHB mutation, the tumors were larger, more frequently extra-adrenal, and malignant. (PMID:16472267)
- Missense, nonsense, frameshift, and splice site mutations of the SDHB gene are associated with about half of all malignancies originating from extraadrenal paragangliomas. (PMID:16912137)
- Familial paraganglioma syndrome type 4 caused by a mutation in the succinate dehydrogenase complex, subunit B gene. (PMID:17143317)
- Mutations of the gene encoding succinate dehydrogenase subunit B predispose to malignant paraganglioma, but clinical expression of these tumors cannot be predicted by the genotype. (PMID:17200167)
- SDHB mutations are associated with malignant phaeochromocytoma. Patients who present with a family history of paraganglioma or phaeochromocytoma, with multiple tumours, or early onset tumours (<50 years), should be referred for genetic investigation. (PMID:17298303)
- Two novel SDH mutations in Japanese pheochromocytomas. (PMID:17308434)
- SDHB mutations are associated with a high rate of malignant head and neck paragangliomas. (PMID:17599579)
- SDHB mutations, frequent in patients with malignant pheochromocytomas or paragangliomas, are associated with shorter survival (PMID:17652212)
- investigated 11 patients with the dyad of ‘paraganglioma and gastric stromal sarcoma’; in eight, from 7 unrelated families, the GISTs were caused by germline mutations of the genes encoding subunits B, C, or D (the SDHB, SDHC and SDHD genes, respectively) (PMID:17667967)
- familial gastrointestinal stromal tumors may be caused by mutations of the succinate dehydrogenase subunit genes SDHB, SDHC, and SDHD (PMID:17804857)
- Molecular genetic analysis with sequencing of the succinate dehydrogenase type B (SDHB) gene revealed a unknown mutation of codon 214 (CAG–>TAG) leading to an amino acid change of glutamine to a stop-Codon (Q214X-mutation) in exon 6 in pheochromocytoma. (PMID:17943698)
- differences in reactive oxygen species production, HIF proliferation, and cell proliferation contribute to the differences in tumor phenotype in cells lacking SdhB as opposed to those lacking SdhA (PMID:17967865)
- After haplotyping the SDHB region, we concluded that the deletion detected in Iberian Peninsular paraganglioma patients is probably due to a founder effect. (PMID:18057081)
- Mutation of succinate dehydrogenase enzyme subunit B gene is associated with metastatic pheochromocytoma and paraganglioma (PMID:18310297)
- There is a pathogenic role of the succinate dehydrogenase B mutation (R46Q) in malignant paraganglioma. (PMID:18362451)
- An excess of SDHB mutations in paragangliomas versus pheochromocytomas was found, with no difference in the frequency of mutations in malignant versus benign paragangliomas. (PMID:18382370)
- SDH-B mutation carriers develop disease early and predominantly in extra-adrenal locations. (PMID:18419787)
- transient silencing of the HIF-1 alpha transcription factor in SDHB-silenced cells had little effect on expression of a subset of up-regulated genes, it partially reversed adhesion phenotype to fibronectin, indicating a role for HIF-1 in this process (PMID:18519664)
- In this Belgian series there is a high frequency of SDHB mutations associated with head and neck paragangliomas without evidence of recurrence or malignancy. (PMID:18551016)
- analysis of germline mutations and variants in the succinate dehydrogenase genes SDHB and SDHD in Cowden and Cowden-like syndromes (PMID:18678321)
- Germline mutations of the SDHB gene may be associated with genetic susceptibility to renal cell carcinoma. Thus, inherited mutations in SDHB may predispose individuals to RCC. (PMID:18728283)
- mediastinal paragangliomas are strongly associated with SDHB gene mutations (PMID:19075037)
- Malignant paraganglioma associated with SDHB is reported in an 8-year-old child. When should genetic screening start? (PMID:19189136)
- SDHB mutations are associated with extra-adrenal paragangliomas. (PMID:19208735)
- we report the case of a novel SDHB mutation (L157X) in a Japanese patient with abdominal paraganglioma following malignant lung metastasis. In addition, we identified an asymptomatic carrier of the SDHB mutation in this family. (PMID:19261994)
- A novel deletion of exon 3 of the SDHB gene was identified in nine apparently unrelated Dutch patients (PMID:19368708)
- Variable expressivity of the phenotype associated with a large exon 1 SDHB deletion, including low penetrance, diverse primary paraganglioma tumor locations, and malignant potential (PMID:19389109)
- Fifteen cases of PGL carried a germline mutation in SDHB or SDHD, four of which not described before. (PMID:19393419)
- Multiple genetic alterations including mutations, polymorphisms and intronic variants are more frequently observed in malignant pheochromocytomas. (PMID:19399650)
- no clear association was found between gene variants involved in oxygen sensing and chemoresponsiveness, although some mutations in the SDHB and SDHD genes deserve further investigations in a larger population. (PMID:19768395)
- We report tumor risks in 358 patients with SDHB (n=295) and SDHD (n=63) mutations for head and neck paragangliomas (HNPGL), adrenal pheochromocytoma and renal tumors. (PMID:19802898)
Cross-species orthologs
7 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | si:dkey-31b16.7 | ENSDARG00000092713 |
| mus_musculus | Sdhb | ENSMUSG00000009863 |
| rattus_norvegicus | Sdhb | ENSRNOG00000007967 |
| drosophila_melanogaster | SdhB | FBGN0014028 |
| drosophila_melanogaster | SdhBL | FBGN0030975 |
| caenorhabditis_elegans | WBGENE00006433 | |
| caenorhabditis_elegans | WBGENE00009626 |
Protein
Protein identifiers
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial — P21912 (reviewed: P21912)
Alternative names: Iron-sulfur subunit of complex II, Malate dehydrogenase [quinone] iron-sulfur subunit
All UniProt accessions (13): A0A087WWT1, A0A087WXX8, A0AAQ5BH73, A0AAQ5BH80, A0AAQ5BH88, A0AAQ5BHA5, A0AAQ5BHB4, A0AAQ5BHC2, A0AAQ5BHC5, A0AAQ5BHC9, A0AAQ5BHD9, A0AAQ5BHE6, P21912
UniProt curated annotations — full annotation on UniProt →
Function. Iron-sulfur protein (IP) subunit of the succinate dehydrogenase complex (mitochondrial respiratory chain complex II), responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). SDH also oxidizes malate to the non-canonical enol form of oxaloacetate, enol-oxaloacetate. Enol-oxaloacetate, which is a potent inhibitor of the succinate dehydrogenase activity, is further isomerized into keto-oxaloacetate.
Subunit / interactions. Component of complex II composed of four subunits: the flavoprotein (FP) SDHA, iron-sulfur protein (IP) SDHB, and a cytochrome b560 composed of SDHC and SDHD. Interacts with SDHAF1; the interaction is required for iron-sulfur cluster incorporation into SDHB. (Microbial infection) Interacts with JC virus small t antigen.
Subcellular location. Mitochondrion inner membrane.
Disease relevance. Pheochromocytoma/paraganglioma syndrome 4 (PPGL4) [MIM:115310] A form of pheochromocytoma/paraganglioma syndrome, a tumor predisposition syndrome characterized by the development of neuroendocrine tumors, usually in adulthood. Pheochromocytomas are catecholamine-producing tumors that arise from chromaffin cells in the adrenal medulla. Paragangliomas develop from sympathetic paraganglia in the thorax, abdomen, and pelvis, as well as from parasympathetic paraganglia in the head and neck. PPGL4 inheritance is autosomal dominant. The disease is caused by variants affecting the gene represented in this entry. Paraganglioma and gastric stromal sarcoma (PGGSS) [MIM:606864] Gastrointestinal stromal tumors may be sporadic or inherited in an autosomal dominant manner, alone or as a component of a syndrome associated with other tumors, such as in the context of neurofibromatosis type 1 (NF1). Patients have both gastrointestinal stromal tumors and paragangliomas. Susceptibility to the tumors was inherited in an apparently autosomal dominant manner, with incomplete penetrance. The disease is caused by variants affecting the gene represented in this entry. Mitochondrial complex II deficiency, nuclear type 4 (MC2DN4) [MIM:619224] A form of mitochondrial complex II deficiency, a disorder with heterogeneous clinical manifestations. Some patients have multisystem involvement of the brain, heart, muscle, liver, and kidneys resulting in death in infancy, whereas others have only isolated cardiac or muscle involvement with onset in adulthood and normal cognition. Clinical features include psychomotor regression in infants, poor growth with lack of speech development, severe spastic quadriplegia, dystonia, progressive leukoencephalopathy, muscle weakness, exercise intolerance, cardiomyopathy. Some patients manifest Leigh syndrome or Kearns-Sayre syndrome. MC2DN4 is a severe, autosomal recessive form characterized by early-onset progressive neurodegeneration with leukoencephalopathy. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Enol-oxaloacetate inhibits the succinate dehydrogenase activity.
Cofactor. Binds 1 [2Fe-2S] cluster. Binds 1 [3Fe-4S] cluster. Binds 1 [4Fe-4S] cluster.
Pathway. Carbohydrate metabolism; tricarboxylic acid cycle; fumarate from succinate (eukaryal route): step 1/1.
Similarity. Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
RefSeq proteins (2): NP_001394290, NP_002991* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001041 | 2Fe-2S_ferredoxin-type | Domain |
| IPR004489 | Succ_DH/fum_Rdtase_Fe-S | Family |
| IPR006058 | 2Fe2S_fd_BS | Binding_site |
| IPR009051 | Helical_ferredxn | Homologous_superfamily |
| IPR012675 | Beta-grasp_dom_sf | Homologous_superfamily |
| IPR017896 | 4Fe4S_Fe-S-bd | Domain |
| IPR017900 | 4Fe4S_Fe_S_CS | Conserved_site |
| IPR025192 | Succ_DH/fum_Rdtase_N | Domain |
| IPR036010 | 2Fe-2S_ferredoxin-like_sf | Homologous_superfamily |
| IPR050573 | SDH/FRD_Iron-Sulfur | Family |
Pfam: PF13085, PF13534
Enzyme classification (BRENDA):
- EC 1.3.5.1 — succinate dehydrogenase (BRENDA: 80 organisms, 226 substrates, 192 inhibitors, 145 Km, 115 kcat entries)
Substrate kinetics (BRENDA)
28 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| SUCCINATE | 0.0015–20 | 39 |
| UBIQUINONE | 0.0005–0.2 | 26 |
| FUMARATE | 0.005–0.455 | 14 |
| 2,3-DIMETHOXY-5-METHYL-6-DECYL-1,4-BENZOQUINONE | 0.0034–0.018 | 9 |
| REDUCED PLUMBAGIN | 0.11–0.19 | 9 |
| UBIQUINONE-2 | 0.0002–0.0114 | 9 |
| MENAQUINOL | 0.0009–0.0054 | 8 |
| PHENAZINE METHOSULFATE | 0.11–0.48 | 3 |
| UBIQUINONE-1 | 0.0016–0.02 | 3 |
| 2,6-DICHLOROPHENOL INDOPHENOL | 0.003–0.007 | 2 |
| CALDARIELLAQUINONE | 0.06–0.18 | 2 |
| MENAQUINONE | 0.0018–0.004 | 2 |
| OXIDIZED 2,6-DICHLOROPHENOLINDOPHENOL | 0.0654–0.089 | 2 |
| 2,3-DIMETHOXY-5-METHYL-1,4-BENZOQUINONE | 0.003 | 1 |
| 2,3-DIMETHYL-1,4-NAPHTHOHYDROQUINONE | 0.12 | 1 |
Catalyzed reactions (Rhea), 3 shown:
- a quinone + succinate = fumarate + a quinol (RHEA:40523)
- (R)-malate + a quinone = enol-oxaloacetate + a quinol (RHEA:79827)
- (S)-malate + a quinone = enol-oxaloacetate + a quinol (RHEA:79831)
UniProt features (76 total): sequence variant 26, binding site 12, strand 10, helix 10, turn 6, sequence conflict 5, modified residue 2, domain 2, transit peptide 1, chain 1, region of interest 1
Structure
Experimental structures (PDB)
6 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9KC4 | ELECTRON MICROSCOPY | 2.65 |
| 8GS8 | ELECTRON MICROSCOPY | 2.86 |
| 7KLV | ELECTRON MICROSCOPY | 3.1 |
| 7KCL | ELECTRON MICROSCOPY | 3.14 |
| 7KCM | ELECTRON MICROSCOPY | 3.43 |
| 7KLU | ELECTRON MICROSCOPY | 3.5 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P21912-F1 | 92.14 | 0.86 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (12): 189; 192; 196; 201; 243; 249; 253; 93; 98; 101; 113; 186
Post-translational modifications (2): 51, 55
Function
Pathways and Gene Ontology
Reactome pathways
5 pathways
| ID | Pathway |
|---|---|
| R-HSA-611105 | Respiratory electron transport |
| R-HSA-71403 | Citric acid cycle (TCA cycle) |
| R-HSA-9854311 | Maturation of TCA enzymes and regulation of TCA cycle |
| R-HSA-1428517 | Aerobic respiration and respiratory electron transport |
| R-HSA-1430728 | Metabolism |
MSigDB gene sets: 643 (showing top):
BORCZUK_MALIGNANT_MESOTHELIOMA_UP, MODULE_151, GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_THE_CH_CH_GROUP_OF_DONORS, MORF_HDAC1, MORF_UBE2N, ACEVEDO_NORMAL_TISSUE_ADJACENT_TO_LIVER_TUMOR_DN, CREBP1_Q2, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, TGACCTY_ERR1_Q2, MORF_HDAC2, GOBP_NUCLEOSIDE_PHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_DICARBOXYLIC_ACID_METABOLIC_PROCESS, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS
GO Biological Process (6): tricarboxylic acid cycle (GO:0006099), succinate metabolic process (GO:0006105), mitochondrial electron transport, succinate to ubiquinone (GO:0006121), aerobic respiration (GO:0009060), respiratory electron transport chain (GO:0022904), proton motive force-driven mitochondrial ATP synthesis (GO:0042776)
GO Molecular Function (10): succinate dehydrogenase (quinone) activity (GO:0008177), electron transfer activity (GO:0009055), metal ion binding (GO:0046872), ubiquinone binding (GO:0048039), 2 iron, 2 sulfur cluster binding (GO:0051537), 3 iron, 4 sulfur cluster binding (GO:0051538), 4 iron, 4 sulfur cluster binding (GO:0051539), protein binding (GO:0005515), oxidoreductase activity (GO:0016491), iron-sulfur cluster binding (GO:0051536)
GO Cellular Component (8): nucleoplasm (GO:0005654), mitochondrion (GO:0005739), mitochondrial inner membrane (GO:0005743), mitochondrial matrix (GO:0005759), plasma membrane (GO:0005886), mitochondrial membrane (GO:0031966), respiratory chain complex II (succinate dehydrogenase) (GO:0045273), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Aerobic respiration and respiratory electron transport | 2 |
| Citric acid cycle (TCA cycle) | 1 |
| Metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| mitochondrion | 3 |
| iron-sulfur cluster binding | 3 |
| cellular respiration | 2 |
| cellular anatomical structure | 2 |
| aerobic respiration | 1 |
| primary metabolic process | 1 |
| dicarboxylic acid metabolic process | 1 |
| aerobic electron transport chain | 1 |
| mitochondrial ATP synthesis coupled electron transport | 1 |
| electron transport chain | 1 |
| oxidative phosphorylation | 1 |
| proton motive force-driven ATP synthesis | 1 |
| succinate dehydrogenase activity | 1 |
| oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor | 1 |
| molecular_function | 1 |
| cation binding | 1 |
| quinone binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
| metal cluster binding | 1 |
| nuclear lumen | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| organelle inner membrane | 1 |
| mitochondrial membrane | 1 |
| intracellular organelle lumen | 1 |
| membrane | 1 |
| cell periphery | 1 |
| mitochondrial envelope | 1 |
| organelle membrane | 1 |
| membrane protein complex | 1 |
| respiratory chain complex | 1 |
| oxidoreductase complex | 1 |
Protein interactions and networks
STRING
5057 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SDHB | SDHA | P31040 | 999 |
| SDHB | SDHC | Q99643 | 999 |
| SDHB | SDHD | O14521 | 999 |
| SDHB | SDHAF2 | Q9NX18 | 998 |
| SDHB | F5H5T6 | F5H5T6 | 994 |
| SDHB | UQCRC2 | P22695 | 977 |
| SDHB | SDHAF1 | A6NFY7 | 959 |
| SDHB | NDUFB8 | O95169 | 953 |
| SDHB | TMEM127 | O75204 | 935 |
| SDHB | FH | P07954 | 893 |
| SDHB | RET | P07949 | 884 |
| SDHB | MT-CO1 | P00395 | 877 |
| SDHB | MT-CYB | P00156 | 847 |
| SDHB | NF1 | P21359 | 823 |
| SDHB | ATP5F1A | P25705 | 811 |
IntAct
153 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| HSCB | SDHB | psi-mi:“MI:0407”(direct interaction) | 0.820 |
| SDHB | SDHA | psi-mi:“MI:0914”(association) | 0.820 |
| HSCB | SDHB | psi-mi:“MI:0915”(physical association) | 0.820 |
| HSCB | SDHB | psi-mi:“MI:0914”(association) | 0.820 |
| SDHA | SDHB | psi-mi:“MI:0914”(association) | 0.820 |
| SDHA | SDHB | psi-mi:“MI:0915”(physical association) | 0.820 |
| SDHB | SDHA | psi-mi:“MI:0915”(physical association) | 0.820 |
| SDHAF1 | SDHB | psi-mi:“MI:0914”(association) | 0.790 |
| SDHAF1 | SDHB | psi-mi:“MI:0915”(physical association) | 0.790 |
| SDHAF1 | SDHB | psi-mi:“MI:0407”(direct interaction) | 0.790 |
| SDHB | SDHAF1 | psi-mi:“MI:0914”(association) | 0.790 |
| SDHB | SDHAF1 | psi-mi:“MI:0915”(physical association) | 0.790 |
BioGRID (261): SDHB (Affinity Capture-MS), AGL (Co-fractionation), ATP6AP2 (Co-fractionation), CISD1 (Co-fractionation), COX4I1 (Co-fractionation), DLAT (Co-fractionation), GPD2 (Co-fractionation), GPI (Co-fractionation), ILVBL (Co-fractionation), MRPL45 (Co-fractionation), COX2 (Co-fractionation), NDUFA12 (Co-fractionation), NDUFA2 (Co-fractionation), NDUFA6 (Co-fractionation), NDUFB9 (Co-fractionation)
ESM2 similar proteins: A5PL98, A8WPF0, A9NNH7, B0BM36, O06914, O42772, O44074, P07014, P08066, P0AC47, P0AC48, P0AC49, P0AC50, P17596, P20921, P21801, P21911, P21912, P21913, P21914, P32420, P44893, P51053, P80480, P9WN88, P9WN89, Q007T0, Q09545, Q1RGP3, Q3B8J8, Q3T189, Q4UN71, Q54I90, Q55CC2, Q59662, Q68XS0, Q6FWS8, Q6H4G3, Q70KF8, Q75CI4
Diamond homologs: A5PL98, A8WPF0, B0BM36, D9PUX5, O42772, O44074, P07014, P0AC47, P0AC48, P0AC49, P0AC50, P17596, P20921, P21801, P21911, P21912, P21913, P21914, P32420, P48932, P48933, P51053, P80477, P80480, P9WN88, P9WN89, Q007T0, Q09545, Q1RGP3, Q3B8J8, Q3T189, Q4UN71, Q55CC2, Q57557, Q59662, Q68XS0, Q6FWS8, Q6H4G3, Q6LYC4, Q70KF8
SIGNOR signaling
4 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| SDHAF2 | up-regulates | SDHB | binding |
| SDHB | “form complex” | “Succinate dehydrogenase-Mitochondrial respiratory chain complex II” | binding |
| “iron-sulfur cluster” | “up-regulates activity” | SDHB | “chemical activation” |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 109 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Maturation of TCA enzymes and regulation of TCA cycle | 7 | 50.0× | 3e-08 |
| Citric acid cycle (TCA cycle) | 5 | 26.4× | 2e-04 |
| Mitochondrial protein import | 7 | 14.7× | 1e-04 |
| Mitochondrial protein degradation | 7 | 10.0× | 9e-04 |
| PIP3 activates AKT signaling | 8 | 6.7× | 3e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| iron-sulfur cluster assembly | 5 | 31.0× | 2e-04 |
| cellular response to epidermal growth factor stimulus | 5 | 16.4× | 3e-03 |
| epidermal growth factor receptor signaling pathway | 6 | 15.3× | 8e-04 |
| phosphatidylinositol 3-kinase/protein kinase B signal transduction | 7 | 15.2× | 2e-04 |
| positive regulation of miRNA transcription | 5 | 15.0× | 3e-03 |
| protein import into nucleus | 6 | 8.9× | 7e-03 |
| cell population proliferation | 7 | 7.4× | 6e-03 |
| positive regulation of ERK1 and ERK2 cascade | 8 | 7.0× | 3e-03 |
Disease & clinical
Cancer significance
Clinical variants and AI predictions
ClinVar
1581 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 189 |
| Likely pathogenic | 65 |
| Uncertain significance | 685 |
| Likely benign | 340 |
| Benign | 48 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1065988 | NM_003000.3(SDHB):c.200+1G>C | Pathogenic |
| 1066588 | NM_003000.3(SDHB):c.557G>A (p.Cys186Tyr) | Pathogenic |
| 1069440 | NM_003000.3(SDHB):c.412del (p.Asp138fs) | Pathogenic |
| 1070347 | NM_003000.3(SDHB):c.466del (p.Tyr156fs) | Pathogenic |
| 1072823 | NC_000001.10:g.(?17345376)(17345463_?)del | Pathogenic |
| 1072824 | NC_000001.10:g.(?17345376)(17371403_?)del | Pathogenic |
| 1074491 | NM_003000.3(SDHB):c.17_18insACTCTCCTTGAGGCGCCGGTTGC (p.Ala15fs) | Pathogenic |
| 1176539 | GRCh37/hg19 1p36.13(chr1:17345376-17345453)x1 | Pathogenic |
| 12778 | NM_003000.3(SDHB):c.268C>T (p.Arg90Ter) | Pathogenic |
| 12782 | NM_003000.3(SDHB):c.716_719del (p.Ser239fs) | Pathogenic |
| 12783 | NM_003000.3(SDHB):c.79C>T (p.Arg27Ter) | Pathogenic |
| 12784 | NM_003000.3(SDHB):c.(-151_-1)_(72+1_73-1)del | Pathogenic |
| 12785 | NM_003000.3(SDHB):c.136C>G (p.Arg46Gly) | Pathogenic |
| 12790 | NM_003000.3(SDHB):c.423+1G>C | Pathogenic |
| 1285202 | NM_003000.3(SDHB):c.200+1G>A | Pathogenic |
| 1326294 | NM_003000.3(SDHB):c.423+1G>T | Pathogenic |
| 1362479 | NC_000001.10:g.(?17345376)(17359650_?)del | Pathogenic |
| 1363102 | NM_003000.3(SDHB):c.598del (p.Trp200fs) | Pathogenic |
| 1371694 | NM_003000.3(SDHB):c.445_446dup (p.Gln149fs) | Pathogenic |
| 1380234 | NM_003000.3(SDHB):c.183T>A (p.Tyr61Ter) | Pathogenic |
| 1381081 | NM_003000.3(SDHB):c.19_41dup (p.Pro14_Ala15insSerProTer) | Pathogenic |
| 1400077 | NM_003000.3(SDHB):c.484G>T (p.Glu162Ter) | Pathogenic |
| 140773 | NM_003000.3(SDHB):c.286+2T>A | Pathogenic |
| 142653 | NM_003000.3(SDHB):c.607_616del (p.Gly203fs) | Pathogenic |
| 142763 | NM_003000.3(SDHB):c.136C>T (p.Arg46Ter) | Pathogenic |
| 1443907 | NM_003000.3(SDHB):c.450C>G (p.Tyr150Ter) | Pathogenic |
| 1452759 | NM_003000.3(SDHB):c.743_765+36del | Pathogenic |
| 1455650 | NC_000001.10:g.(?17349093)(17380514_?)del | Pathogenic |
| 1455849 | NM_003000.3(SDHB):c.243_246dup (p.Val83Ter) | Pathogenic |
| 1456331 | NM_003000.3(SDHB):c.75del (p.Ser26fs) | Pathogenic |
SpliceAI
1255 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:17018958:CCT:C | acceptor_gain | 1.0000 |
| 1:17018960:T:C | acceptor_gain | 1.0000 |
| 1:17022603:CGTA:C | donor_loss | 1.0000 |
| 1:17022604:GTA:G | donor_loss | 1.0000 |
| 1:17022605:TAC:T | donor_loss | 1.0000 |
| 1:17022606:ACC:A | donor_loss | 1.0000 |
| 1:17022607:C:CT | donor_loss | 1.0000 |
| 1:17022726:TAGGC:T | acceptor_gain | 1.0000 |
| 1:17022728:GGCC:G | acceptor_loss | 1.0000 |
| 1:17022729:GCCTG:G | acceptor_loss | 1.0000 |
| 1:17022730:CCTGG:C | acceptor_loss | 1.0000 |
| 1:17022731:C:CC | acceptor_gain | 1.0000 |
| 1:17022731:CTGG:C | acceptor_loss | 1.0000 |
| 1:17022732:T:A | acceptor_loss | 1.0000 |
| 1:17027758:A:AC | donor_gain | 1.0000 |
| 1:17027759:C:CC | donor_gain | 1.0000 |
| 1:17027759:CG:C | donor_gain | 1.0000 |
| 1:17027759:CGCT:C | donor_gain | 1.0000 |
| 1:17027795:T:A | donor_gain | 1.0000 |
| 1:17028598:A:AC | donor_gain | 1.0000 |
| 1:17028599:C:CC | donor_gain | 1.0000 |
| 1:17033143:CAT:C | acceptor_gain | 1.0000 |
| 1:17044753:ATACT:A | donor_loss | 1.0000 |
| 1:17044757:TCA:T | donor_loss | 1.0000 |
| 1:17044758:CACTT:C | donor_loss | 1.0000 |
| 1:17044759:A:AC | donor_gain | 1.0000 |
| 1:17044760:C:CA | donor_gain | 1.0000 |
| 1:17044760:CT:C | donor_gain | 1.0000 |
| 1:17044760:CTT:C | donor_gain | 1.0000 |
| 1:17044760:CTTA:C | donor_gain | 1.0000 |
AlphaMissense
1835 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:17022646:A:G | C243R | 1.000 |
| 1:17024029:A:G | C196R | 1.000 |
| 1:17024059:A:G | C186R | 1.000 |
| 1:17022614:A:C | C253W | 0.999 |
| 1:17022615:C:T | C253Y | 0.999 |
| 1:17022616:A:G | C253R | 0.999 |
| 1:17022626:G:C | C249W | 0.999 |
| 1:17022627:C:T | C249Y | 0.999 |
| 1:17022628:A:G | C249R | 0.999 |
| 1:17022644:G:C | C243W | 0.999 |
| 1:17022645:C:A | C243F | 0.999 |
| 1:17022645:C:G | C243S | 0.999 |
| 1:17022645:C:T | C243Y | 0.999 |
| 1:17022646:A:T | C243S | 0.999 |
| 1:17022704:T:A | R223S | 0.999 |
| 1:17022704:T:G | R223S | 0.999 |
| 1:17022705:C:A | R223I | 0.999 |
| 1:17022705:C:G | R223T | 0.999 |
| 1:17022721:A:G | W218R | 0.999 |
| 1:17022721:A:T | W218R | 0.999 |
| 1:17022723:C:G | R217P | 0.999 |
| 1:17022724:G:T | R217S | 0.999 |
| 1:17023992:C:T | G208E | 0.999 |
| 1:17023993:C:G | G208R | 0.999 |
| 1:17023993:C:T | G208R | 0.999 |
| 1:17024021:G:C | S198R | 0.999 |
| 1:17024021:G:T | S198R | 0.999 |
| 1:17024023:T:G | S198R | 0.999 |
| 1:17024027:G:C | C196W | 0.999 |
| 1:17024028:C:T | C196Y | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000040715 (1:17035471 C>T), RS1000158338 (1:17047868 T>C,G), RS1000341001 (1:17030102 T>G), RS1000501757 (1:17036787 C>A,T), RS1000507925 (1:17018668 A>C,G), RS1000582771 (1:17024680 G>A), RS1000694609 (1:17042818 C>T), RS1000760553 (1:17049557 A>G), RS1000786527 (1:17031260 G>C), RS1000965442 (1:17049301 CTTTT>C,CTTT,CTTTTT,CTTTTTT), RS1001036889 (1:17055138 G>A), RS1001173587 (1:17023622 C>T), RS1001191146 (1:17049829 T>C,G), RS1001293246 (1:17048749 C>A,G,T), RS1001314422 (1:17054248 C>A,G,T)
Disease associations
OMIM: gene MIM:185470 | disease phenotypes: MIM:115310, MIM:171300, MIM:606764, MIM:168000, MIM:193300, MIM:606864, MIM:619224, MIM:158350, MIM:604287, MIM:167000, MIM:252011
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| pheochromocytoma/paraganglioma syndrome 4 | Definitive | Autosomal dominant |
| hereditary pheochromocytoma-paraganglioma | Definitive | Autosomal dominant |
| gastrointestinal stromal tumor | Definitive | Autosomal dominant |
| Carney-Stratakis syndrome | Definitive | Autosomal dominant |
| pheochromocytoma | Definitive | Autosomal dominant |
| renal cell carcinoma | Strong | Autosomal dominant |
| mitochondrial complex 2 deficiency, nuclear type 4 | Strong | Autosomal recessive |
| Cowden disease | Supportive | Autosomal dominant |
| mitochondrial complex II deficiency | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| mitochondrial disease | Definitive | AR |
| hereditary pheochromocytoma-paraganglioma | Definitive | AD |
Mondo (19): pheochromocytoma/paraganglioma syndrome 4 (MONDO:0007273), pheochromocytoma (MONDO:0008233), gastrointestinal stromal tumor (MONDO:0011719), hereditary neoplastic syndrome (MONDO:0015356), hereditary pheochromocytoma-paraganglioma (MONDO:0017366), von Hippel-Lindau disease (MONDO:0008667), Carney-Stratakis syndrome (MONDO:0011740), mitochondrial complex 2 deficiency, nuclear type 4 (MONDO:0030974), Cowden disease (MONDO:0016063), breast cancer (MONDO:0007254), paraganglioma (MONDO:0000448), renal cell carcinoma (MONDO:0005086), Carney triad (MONDO:0011424), Cowden syndrome 1 (MONDO:0008021), ovarian cancer (MONDO:0008170)
Orphanet (11): Inherited cancer-predisposing syndrome (Orphanet:140162), Hereditary pheochromocytoma-paraganglioma (Orphanet:29072), Gastrointestinal stromal tumor (Orphanet:44890), Von Hippel-Lindau disease (Orphanet:892), Carney-Stratakis syndrome (Orphanet:97286), Cowden syndrome (Orphanet:201), Renal cell carcinoma (Orphanet:217071), Carney triad (Orphanet:139411), Rare ovarian cancer (Orphanet:213500), Hereditary papillary renal cell carcinoma (Orphanet:47044), Isolated succinate-CoQ reductase deficiency (Orphanet:3208)
HPO phenotypes
214 total (30 of 214 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000036 | Abnormal penis morphology |
| HP:0000076 | Vesicoureteral reflux |
| HP:0000077 | Abnormality of the kidney |
| HP:0000093 | Proteinuria |
| HP:0000096 | Glomerular sclerosis |
| HP:0000130 | Abnormality of the uterus |
| HP:0000158 | Macroglossia |
| HP:0000218 | High palate |
| HP:0000221 | Furrowed tongue |
| HP:0000252 | Microcephaly |
| HP:0000256 | Macrocephaly |
| HP:0000360 | Tinnitus |
| HP:0000365 | Hearing impairment |
| HP:0000405 | Conductive hearing impairment |
| HP:0000478 | Abnormality of the eye |
| HP:0000518 | Cataract |
| HP:0000526 | Aniridia |
| HP:0000544 | External ophthalmoplegia |
| HP:0000545 | Myopia |
| HP:0000580 | Pigmentary retinopathy |
| HP:0000618 | Blindness |
| HP:0000639 | Nystagmus |
| HP:0000717 | Autism |
| HP:0000726 | Dementia |
| HP:0000737 | Irritability |
| HP:0000740 | Episodic paroxysmal anxiety |
| HP:0000750 | Delayed speech and language development |
| HP:0000767 | Pectus excavatum |
GWAS associations
24 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000611_7 | Height | 2.000000e-07 |
| GCST010696_16 | Cortical thickness (min-P) | 8.000000e-11 |
| GCST010697_21 | Cortical surface area (min-P) | 1.000000e-08 |
| GCST010698_46 | Subcortical volume (min-P) | 2.000000e-11 |
| GCST010699_5 | Brain morphology (min-P) | 7.000000e-11 |
| GCST010700_46 | Cortical thickness (MOSTest) | 2.000000e-10 |
| GCST010701_63 | Cortical surface area (MOSTest) | 3.000000e-14 |
| GCST010702_161 | Subcortical volume (MOSTest) | 2.000000e-20 |
| GCST010703_70 | Brain morphology (MOSTest) | 2.000000e-08 |
| GCST012226_410 | Waist circumference adjusted for body mass index | 2.000000e-08 |
| GCST012226_411 | Waist circumference adjusted for body mass index | 4.000000e-14 |
| GCST012226_412 | Waist circumference adjusted for body mass index | 1.000000e-08 |
| GCST012226_413 | Waist circumference adjusted for body mass index | 1.000000e-12 |
| GCST012227_1377 | Hip circumference adjusted for BMI | 1.000000e-12 |
| GCST012227_1379 | Hip circumference adjusted for BMI | 4.000000e-14 |
| GCST012227_1380 | Hip circumference adjusted for BMI | 2.000000e-15 |
| GCST90020024_4 | A body shape index | 2.000000e-11 |
| GCST90020024_5 | A body shape index | 5.000000e-10 |
| GCST90020024_6 | A body shape index | 5.000000e-12 |
| GCST90020028_565 | Hip circumference adjusted for BMI | 2.000000e-09 |
| GCST90020028_660 | Hip circumference adjusted for BMI | 1.000000e-14 |
| GCST90020028_664 | Hip circumference adjusted for BMI | 2.000000e-08 |
| GCST90020029_1249 | Waist circumference adjusted for body mass index | 1.000000e-13 |
| GCST90020029_1250 | Waist circumference adjusted for body mass index | 2.000000e-10 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004346 | neuroimaging measurement |
| EFO:0004840 | cortical thickness |
| EFO:0007789 | BMI-adjusted waist circumference |
| EFO:0008039 | BMI-adjusted hip circumference |
MeSH disease descriptors (11)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002292 | Carcinoma, Renal Cell | C04.557.470.200.025.390; C04.588.945.947.535.160; C12.050.351.937.820.535.160; C12.050.351.968.419.473.160; C12.200.758.820.750.160; C12.200.777.419.473.160; C12.900.820.535.160; C12.950.419.473.160; C12.950.983.535.160 |
| D046152 | Gastrointestinal Stromal Tumors | C04.557.450.565.370; C06.301.371.308; C06.405.249.308 |
| D006223 | Hamartoma Syndrome, Multiple | C04.445.435; C04.651.435; C04.700.435; C16.320.700.435 |
| D009386 | Neoplastic Syndromes, Hereditary | C04.700; C16.320.700 |
| D010051 | Ovarian Neoplasms | C04.588.322.455; C12.050.351.500.056.630.705; C12.050.351.937.418.685; C12.100.250.056.630.705; C12.900.418.685; C19.344.410; C19.391.630.705 |
| D010235 | Paraganglioma | C04.557.465.625.650.700; C04.557.580.625.650.700 |
| D010673 | Pheochromocytoma | C04.557.465.625.650.700.725; C04.557.580.625.650.700.725 |
| D006623 | von Hippel-Lindau Disease | C10.562.925; C14.907.077.925; C16.131.077.245.750; C16.320.184.750 |
| C565803 | Carney Triad (supp.) | |
| C564650 | Carney-Stratakis Syndrome (supp.) | |
| C565375 | Mitochondrial Complex II Deficiency (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4105824 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
Binding affinities (BindingDB)
4 measured of 4 human assays (4 total across all organisms); most potent 4 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| N-(1-adamantyl)-4-[4-[1-[(3,4-dimethoxyphenyl)methyl]-6-oxo-3-pyridinyl]-6-(trifluoromethyl)pyrimidin-2-yl]sulfonylbutanamide | EC50 | 500 nM | US-11725000: Apoptosis inhibitors |
| N-(1-adamantyl)-4-[4-(difluoromethyl)-6-[1-[(3,4-dimethoxyphenyl)methyl]-6-oxo-3-pyridinyl]pyrimidin-2-yl]sulfonylbutanamide | EC50 | 500 nM | US-11725000: Apoptosis inhibitors |
| N-(1-adamantyl)-4-[4-[1-(1,3-benzodioxol-5-ylmethyl)-5-fluoro-6-oxo-3-pyridinyl]-6-methylpyrimidin-2-yl]sulfonylbutanamide | EC50 | 500 nM | US-11725000: Apoptosis inhibitors |
| N-(1-adamantyl)-4-[4-[5-fluoro-1-[(3-methylbenzotriazol-5-yl)methyl]-6-oxo-3-pyridinyl]-6-methylpyrimidin-2-yl]sulfonylbutanamide | EC50 | 500 nM | US-11725000: Apoptosis inhibitors |
ChEMBL bioactivities
36 potent at pChembl≥5 of 39 total, top 36 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.64 | EC50 | 0.23 | nM | CHEMBL4078870 |
| 9.38 | EC50 | 0.42 | nM | CHEMBL4078870 |
| 8.85 | EC50 | 1.4 | nM | CHEMBL4078220 |
| 7.60 | EC50 | 25 | nM | CHEMBL4091379 |
| 7.57 | EC50 | 27 | nM | CHEMBL4064603 |
| 7.24 | EC50 | 57 | nM | CHEMBL4070501 |
| 7.18 | EC50 | 66 | nM | CHEMBL4061878 |
| 7.16 | EC50 | 69 | nM | CHEMBL4092330 |
| 7.03 | EC50 | 94 | nM | CHEMBL4082074 |
| 6.96 | EC50 | 110 | nM | CHEMBL4071549 |
| 6.79 | EC50 | 164 | nM | CHEMBL4086114 |
| 6.67 | EC50 | 216 | nM | CHEMBL4093871 |
| 6.60 | EC50 | 253 | nM | CHEMBL4083596 |
| 6.59 | EC50 | 257 | nM | CHEMBL4089942 |
| 6.55 | EC50 | 282 | nM | CHEMBL4073188 |
| 6.44 | EC50 | 364 | nM | CHEMBL4101603 |
| 6.13 | EC50 | 749 | nM | CHEMBL1430895 |
| 6.09 | EC50 | 817 | nM | CHEMBL4101046 |
| 5.95 | EC50 | 1135 | nM | CHEMBL4070722 |
| 5.94 | EC50 | 1143 | nM | CHEMBL4063455 |
| 5.94 | EC50 | 1157 | nM | CHEMBL4085084 |
| 5.84 | EC50 | 1428 | nM | CHEMBL4097841 |
| 5.80 | EC50 | 1591 | nM | CHEMBL4090123 |
| 5.74 | EC50 | 1821 | nM | CHEMBL4097672 |
| 5.66 | EC50 | 2201 | nM | CHEMBL1492648 |
| 5.46 | EC50 | 3489 | nM | CHEMBL4063532 |
| 5.46 | EC50 | 3487 | nM | CHEMBL4096202 |
| 5.45 | EC50 | 3516 | nM | CHEMBL4086039 |
| 5.40 | EC50 | 4000 | nM | CHEMBL4103147 |
| 5.39 | EC50 | 4060 | nM | CHEMBL4074296 |
| 5.38 | EC50 | 4207 | nM | CHEMBL4062092 |
| 5.35 | EC50 | 4477 | nM | CHEMBL4100077 |
| 5.20 | EC50 | 6355 | nM | CHEMBL4078150 |
| 5.18 | EC50 | 6642 | nM | CHEMBL4104624 |
| 5.15 | EC50 | 7033 | nM | CHEMBL4103961 |
| 5.06 | EC50 | 8756 | nM | CHEMBL4088482 |
PubChem BioAssay actives
36 with measured affinity, of 60 total; 35 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| N-(1-adamantyl)-4-[4-[1-[(3,4-dimethoxyphenyl)methyl]-6-oxo-3-pyridinyl]-6-(trifluoromethyl)pyrimidin-2-yl]sulfonylbutanamide | 1427665: Inhibition of SDHB in human U2OS cells over-expressing tBid assessed as reduction in apoptosis preincubated for 1 hr followed by doxycyclin addition to induce tBid protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 0.0002 | uM |
| 1-[(3,4-dimethoxyphenyl)methyl]-5-[2-(4-oxo-4-piperidin-1-ylbutyl)sulfonyl-6-(trifluoromethyl)pyrimidin-4-yl]pyridin-2-one | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 0.0014 | uM |
| 1-[(3,4-dimethoxyphenyl)methyl]-5-[2-methylsulfonyl-6-(trifluoromethyl)pyrimidin-4-yl]pyridin-2-one | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 0.0250 | uM |
| 1-[(3,4-dimethoxyphenyl)methyl]-5-[2-(4-oxo-4-pyrrolidin-1-ylbutyl)sulfonyl-6-(trifluoromethyl)pyrimidin-4-yl]pyridin-2-one | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 0.0270 | uM |
| 1-[(3-methoxyphenyl)methyl]-5-[2-methylsulfonyl-6-(trifluoromethyl)pyrimidin-4-yl]pyridin-2-one | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 0.0570 | uM |
| 1-[(4-chlorophenyl)methyl]-5-[2-methylsulfonyl-6-(trifluoromethyl)pyrimidin-4-yl]pyridin-2-one | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 0.0660 | uM |
| 5-[2-methylsulfonyl-6-(trifluoromethyl)pyrimidin-4-yl]-1-[(3-propoxyphenyl)methyl]pyridin-2-one | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 0.0690 | uM |
| 1-[(4-methoxyphenyl)methyl]-5-[2-methylsulfonyl-6-(trifluoromethyl)pyrimidin-4-yl]pyridin-2-one | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 0.0940 | uM |
| 1-[(3-ethoxyphenyl)methyl]-5-[2-methylsulfonyl-6-(trifluoromethyl)pyrimidin-4-yl]pyridin-2-one | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 0.1100 | uM |
| 4-[4-[1-[(3,4-dimethoxyphenyl)methyl]-6-oxo-3-pyridinyl]-6-(trifluoromethyl)pyrimidin-2-yl]sulfonyl-N,N-dimethylbutanamide | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 0.1640 | uM |
| 1-[(3,4-dimethoxyphenyl)methyl]-5-[2-(2-methoxyethylsulfonyl)-6-(trifluoromethyl)pyrimidin-4-yl]pyridin-2-one | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 0.2160 | uM |
| 1-[(3,4-dimethoxyphenyl)methyl]-5-[2-heptylsulfonyl-6-(trifluoromethyl)pyrimidin-4-yl]pyridin-2-one | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 0.2530 | uM |
| 1-[(3-chlorophenyl)methyl]-5-[2-methylsulfonyl-6-(trifluoromethyl)pyrimidin-4-yl]pyridin-2-one | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 0.2570 | uM |
| 1-[(3,4-dimethoxyphenyl)methyl]-5-[2-(3-methoxypropylsulfonyl)-6-(trifluoromethyl)pyrimidin-4-yl]pyridin-2-one | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 0.2820 | uM |
| 1-[(3,4-dimethoxyphenyl)methyl]-5-[2-pentylsulfonyl-6-(trifluoromethyl)pyrimidin-4-yl]pyridin-2-one | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 0.3640 | uM |
| 2-methylsulfonyl-4-thiophen-2-yl-6-(trifluoromethyl)pyrimidine | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 0.7490 | uM |
| 1-[(4-ethynylphenyl)methyl]-5-[2-methylsulfonyl-6-(trifluoromethyl)pyrimidin-4-yl]pyridin-2-one | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 0.8170 | uM |
| ethyl 3-[4-thiophen-2-yl-6-(trifluoromethyl)pyrimidin-2-yl]sulfonylpropanoate | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 1.1350 | uM |
| 1-[(2-chlorophenyl)methyl]-5-[2-methylsulfonyl-6-(trifluoromethyl)pyrimidin-4-yl]pyridin-2-one | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 1.1430 | uM |
| 1-benzyl-5-[2-methylsulfonyl-6-(trifluoromethyl)pyrimidin-4-yl]pyridin-2-one | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 1.1570 | uM |
| 2-ethylsulfonyl-4-thiophen-2-yl-6-(trifluoromethyl)pyrimidine | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 1.4280 | uM |
| 2-(2-phenylethylsulfonyl)-4-thiophen-2-yl-6-(trifluoromethyl)pyrimidine | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 1.5910 | uM |
| 1-[(3-hydroxyphenyl)methyl]-5-[2-methylsulfonyl-6-(trifluoromethyl)pyrimidin-4-yl]pyridin-2-one | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 1.8210 | uM |
| 2-methylsulfonyl-4-phenyl-6-(trifluoromethyl)pyrimidine | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 2.2010 | uM |
| 4-(3-methylphenyl)-2-methylsulfonyl-6-(trifluoromethyl)pyrimidine | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 3.4870 | uM |
| 4-[[5-[2-methylsulfonyl-6-(trifluoromethyl)pyrimidin-4-yl]-2-oxo-1-pyridinyl]methyl]benzonitrile | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 3.4890 | uM |
| methyl 3-[2-methylsulfonyl-6-(trifluoromethyl)pyrimidin-4-yl]benzoate | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 3.5160 | uM |
| N-(2-hydroxy-5-methylphenyl)-4-[4-thiophen-2-yl-6-(trifluoromethyl)pyrimidin-2-yl]sulfonylbutanamide | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 4.0000 | uM |
| 3-[[5-[2-methylsulfonyl-6-(trifluoromethyl)pyrimidin-4-yl]-2-oxo-1-pyridinyl]methyl]benzonitrile | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 4.0600 | uM |
| 2-[(4-phenylphenyl)methylsulfonyl]-4-thiophen-2-yl-6-(trifluoromethyl)pyrimidine | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 4.2070 | uM |
| 1-[(3-ethynylphenyl)methyl]-5-[2-methylsulfonyl-6-(trifluoromethyl)pyrimidin-4-yl]pyridin-2-one | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 4.4770 | uM |
| 4-(4-methylphenyl)-2-methylsulfonyl-6-(trifluoromethyl)pyrimidine | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 6.3550 | uM |
| 4-(2-methylphenyl)-2-methylsulfonyl-6-(trifluoromethyl)pyrimidine | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 6.6420 | uM |
| methyl 2-[2-methylsulfonyl-6-(trifluoromethyl)pyrimidin-4-yl]benzoate | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 7.0330 | uM |
| 2-methylsulfonyl-4-(3-phenoxyphenyl)-6-(trifluoromethyl)pyrimidine | 1427662: Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | ec50 | 8.7560 | uM |
CTD chemical–gene interactions
71 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | increases abundance, affects cotreatment, increases methylation, decreases expression, increases expression (+1 more) | 5 |
| Acetaminophen | affects cotreatment, decreases expression | 2 |
| Aerosols | decreases expression | 2 |
| Benzo(a)pyrene | affects methylation, decreases expression | 2 |
| 1-Methyl-4-phenylpyridinium | decreases expression, increases reaction | 2 |
| Particulate Matter | decreases expression, increases abundance, increases expression, affects cotreatment | 2 |
| bisphenol F | increases expression | 1 |
| ginger extract | decreases reaction, increases abundance, increases expression | 1 |
| lasiocarpine | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | increases abundance, affects cotreatment, decreases expression | 1 |
| lead acetate | decreases reaction, increases abundance, decreases expression | 1 |
| pyrogallol 1,3-dimethyl ether | increases expression, affects cotreatment | 1 |
| plastochromanol 8 | decreases expression | 1 |
| 2,6-dichloro-4-nitrophenol | decreases expression | 1 |
| sodium arsenite | increases expression | 1 |
| 2-bromopalmitate | increases abundance, increases palmitoylation, decreases reaction | 1 |
| nickel chloride | increases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| ochratoxin A | decreases expression | 1 |
| methacrylaldehyde | increases abundance, affects cotreatment, decreases expression | 1 |
| isobutyl alcohol | affects cotreatment, decreases expression, increases abundance | 1 |
| S-1,2-dichlorovinyl-N-acetylcysteine | affects expression | 1 |
| demethoxycurcumin | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| azoxystrobin | increases expression | 1 |
| chloropicrin | increases expression | 1 |
| pyrimidifen | increases expression | 1 |
| bisphenol B | increases expression | 1 |
| olaparib | increases response to substance | 1 |
ChEMBL screening assays
4 unique, capped per target: 4 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3994501 | Binding | Inhibition of SDHB in human U2OS cells over-expressing Bim assessed as inhibition of apoptosis preincubated for 1 hr followed by doxycyclin addition to induce Bim protein expression measured after 24 hrs by Cell Titer-Glo assay | Discovery of Highly Potent 2-Sulfonyl-Pyrimidinyl Derivatives for Apoptosis Inhibition and Ischemia Treatment. — ACS Med Chem Lett |
Cellosaurus cell lines
5 cell lines: 3 cancer cell line, 1 transformed cell line, 1 telomerase immortalized cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B0YF | Abcam HEK293 SDHB KO | Transformed cell line | Female |
| CVCL_C6JR | hPheo1 KD-SDHB | Telomerase immortalized cell line | Female |
| CVCL_D1UB | Abcam U-87MG SDHB KO | Cancer cell line | Male |
| CVCL_D7ZZ | Ubigene A-549 SDHB KO | Cancer cell line | Male |
| CVCL_E0N8 | Ubigene HeLa SDHB KO | Cancer cell line | Female |
Clinical trials (associated diseases)
595 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00414765 | PHASE4 | COMPLETED | Aldesleukin in Participants With Metastatic Renal Cell Carcinoma or Metastatic Melanoma |
| NCT00777504 | PHASE4 | UNKNOWN | Study to the Optimal Duration of Therapy With Oral Angiogenesis Inhibitors |
| NCT00930345 | PHASE4 | TERMINATED | Biological, Pathological and Imagery Markers in the First-line Treatment of Metastatic Clear-cell Renal Cell Carcinoma |
| NCT01206764 | PHASE4 | COMPLETED | A Trial of Everolimis in Patients With Advanced Renal Cell Carcinoma. |
| NCT01266837 | PHASE4 | COMPLETED | Open Label, Single Arm Trial to Characterize Patients With Metastatic RCC Treated With Everolimus After Failure of the First VEGF-targeted Therapy (MARC-2) |
| NCT02056587 | PHASE4 | COMPLETED | Everolimus in Patients With Metastatic Renal Cell Carcinoma Following Progression on Prior Bevacizumab Treatment |
| NCT02338570 | PHASE4 | TERMINATED | Outcome-related Factors in Patients With Metastatic Renal Cell Carcinoma Treated With Everolimus (ORCHIDEE) |
| NCT02596035 | PHASE4 | COMPLETED | An Investigational Immuno-therapy Safety Trial of Nivolumab in Patients With Advanced or Metastatic Renal Cell Carcinoma |
| NCT02982954 | PHASE4 | COMPLETED | A Study to Evaluate the Safety of Nivolumab and Ipilimumab in Subjects With Previously Untreated Advanced or Metastatic Renal Cell Cancer |
| NCT05949424 | PHASE4 | UNKNOWN | OPTI - DOSE: Optimal Dosing of Oral Anticancer Drugs in Older Adults |
| NCT07028125 | PHASE4 | RECRUITING | Digital Monitoring of Self-reported Symptoms by Patients Treated With Cabozantinib Plus Nivolumab for Advanced Clear-cell Renal Carcinoma |
| NCT07405086 | PHASE4 | RECRUITING | Morning Versus Afternoon Administration of Immunotherapy for the Treatment of Advanced or Metastatic Solid Tumors, The Knight SHIFT Study |
| NCT01379898 | PHASE4 | COMPLETED | Phenoxybenzamine Versus Doxazosin in PCC Patients |
| NCT01959711 | PHASE4 | COMPLETED | Randomized Clinical Trial of Posterior Retroperitoneoscopic Adrenalectomy Versus Lateral Laparoscopic Adrenalectomy |
| NCT05702944 | PHASE4 | RECRUITING | The Effect and Safety of Omitting Preoperative Alpha-adrenergic Blockade for Normotensive Pheochromocytoma |
| NCT00171977 | PHASE4 | COMPLETED | Post-Marketing Clinical Study of Postoperative Adjuvant Therapy With Imatinib Mesylate in Patients With Gastrointestinal Stromal Tumors (GIST) |
| NCT00510354 | PHASE4 | COMPLETED | Treatment of Patients With Everolimus and Imatinib Mesylate Who Have Progressive Gastro Intestinal Stromal Tumors (GIST) and Are Resistant to Imatinib Mesylate |
| NCT00756509 | PHASE4 | COMPLETED | Treatment of Patients With Metastatic or Unresectable Gastrointestinal Stromal Tumors in First Line With Nilotinib |
| NCT02800330 | PHASE4 | COMPLETED | The Effects of the Proton Pump Inhibitor Esomeprazole on the Bioavailability of Regorafenib |
| NCT04825574 | PHASE4 | COMPLETED | Study for Patients Previously Treated in Avapritinib Clinical Trials |
| NCT00033904 | PHASE3 | COMPLETED | Survival Study Of Oncophage® vs. Observation In Patients With Kidney Cancer |
| NCT00126178 | PHASE3 | TERMINATED | Clinical Trial Studying a Personalized Cancer Vaccine in Patients With Non-metastatic Kidney Cancer |
| NCT00291369 | PHASE3 | COMPLETED | Cytokines in Patients With Metastatic Renal Cell Carcinoma of Intermediate Prognosis |
| NCT00410124 | PHASE3 | COMPLETED | RAD001 Plus Best Supportive Care (BSC) Versus BSC Plus Placebo in Patients With Metastatic Carcinoma of the Kidney Which Has Progressed After Treatment With Sorafenib and/or Sunitinib |
| NCT00474786 | PHASE3 | COMPLETED | Temsirolimus Versus Sorafenib As Second-Line Therapy In Patients With Advanced RCC Who Have Failed First-Line Sunitinib |
| NCT00478114 | PHASE3 | COMPLETED | Efficacy and Safety of Sorafenib in Advanced Renal Cell Carcinoma (RCC) |
| NCT00606632 | PHASE3 | COMPLETED | Pre-surgical Detection of Clear Cell Renal Cell Carcinoma (ccRCC) Using Radiolabeled G250-Antibody |
| NCT00606866 | PHASE3 | COMPLETED | MRI Study of BAY 43-9006 in Metastatic Renal Cell Carcinoma |
| NCT00631371 | PHASE3 | COMPLETED | Study Comparing Bevacizumab + Temsirolimus vs. Bevacizumab + Interferon-Alfa In Advanced Renal Cell Carcinoma Subjects |
| NCT00732914 | PHASE3 | COMPLETED | Sequential Study to Treat Renal Cell Carcinoma |
| NCT00869011 | PHASE3 | UNKNOWN | Exercise for Patients With Renal Cell Cancer Receiving Sunitinib |
| NCT00930033 | PHASE3 | COMPLETED | Clinical Trial to Assess the Importance of Nephrectomy |
| NCT01030783 | PHASE3 | COMPLETED | A Study to Compare Tivozanib (AV-951) to Sorafenib in Subjects With Advanced Renal Cell Carcinoma |
| NCT01076010 | PHASE3 | COMPLETED | An Extension Treatment Protocol for Subjects Who Have Participated in a Study of Tivozanib Versus Sorafenib in Kidney Carcinoma (Protocol AV-951-09-301). |
| NCT01198158 | PHASE3 | TERMINATED | Everolimus With or Without Bevacizumab in Treating Patients With Advanced Kidney Cancer That Progressed After First-Line Therapy |
| NCT01223027 | PHASE3 | COMPLETED | Study of Dovitinib Versus Sorafenib in Patients With Metastatic Renal Cell Carcinoma |
| NCT01224288 | PHASE3 | ACTIVE_NOT_RECRUITING | Dynamic Contrast Enhancement Computed Tomography for Evaluating Tumor Perfusion in Patients With Metastatic Renal Cell Carcinoma Receiving Targeted Therapies: Renal Cell Carcinoma (RCC) Scramble |
| NCT01235962 | PHASE3 | COMPLETED | A Study to Evaluate Pazopanib as an Adjuvant Treatment for Localized Renal Cell Carcinoma (RCC) |
| NCT01265810 | PHASE3 | COMPLETED | Caphosol in Oral Mucositis Due to Targeted Therapy |
| NCT01265901 | PHASE3 | COMPLETED | IMA901 in Patients Receiving Sunitinib for Advanced/Metastatic Renal Cell Carcinoma |
Related Atlas pages
- Associated diseases: pheochromocytoma/paraganglioma syndrome 4, hereditary pheochromocytoma-paraganglioma, renal cell carcinoma, gastrointestinal stromal tumor, Carney-Stratakis syndrome, mitochondrial complex 2 deficiency, nuclear type 4, Cowden disease, pheochromocytoma, mitochondrial disease
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): cardiac rhythm disease, Carney triad, Carney-Stratakis syndrome, Cowden disease, Cowden syndrome 1, gastrointestinal stromal tumor, hereditary neoplastic syndrome, hereditary pheochromocytoma-paraganglioma, kidney neoplasm, mitochondrial complex 2 deficiency, nuclear type 4, mitochondrial complex II deficiency, nuclear type 1, ovarian cancer, paraganglioma, pheochromocytoma, pheochromocytoma/paraganglioma syndrome 4, renal cell carcinoma, von Hippel-Lindau disease