SDK1-AS1

Summary

SDK1-AS1 (SDK1 antisense RNA 1, HGNC:40883) is a long non-coding RNA gene on chromosome 7p22.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40883
Approved symbol	SDK1-AS1
Name	SDK1 antisense RNA 1
Location	7p22.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC073316.3
Ensembl gene	ENSG00000236708
Ensembl biotype	lncRNA
Entrez	105375132
RNAcentral	URS0002A38591 — lncRNA, 1994 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000437354, ENST00000837657, ENST00000837658, ENST00000837659, ENST00000837660, ENST00000837661

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000437354 — 2 exons

Exon	Start	End
ENSE00004258293	3263366	3264789
ENSE00004258294	3302229	3302452

Expression profiles

Bgee: expression breadth ubiquitous, 109 present calls, max score 83.49.

Top tissues by expression

109 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.49	gold quality
colonic epithelium	UBERON:0000397	71.84	silver quality
popliteal artery	UBERON:0002250	67.15	gold quality
tibial artery	UBERON:0007610	67.15	gold quality
right coronary artery	UBERON:0001625	64.20	gold quality
endometrium	UBERON:0001295	62.92	gold quality
urinary bladder	UBERON:0001255	62.02	gold quality
ventricular zone	UBERON:0003053	61.50	gold quality
left coronary artery	UBERON:0001626	58.85	gold quality
islet of Langerhans	UBERON:0000006	58.22	gold quality
right lung	UBERON:0002167	58.13	gold quality
ganglionic eminence	UBERON:0004023	57.48	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	57.24	gold quality
vermiform appendix	UBERON:0001154	56.85	gold quality
smooth muscle tissue	UBERON:0001135	55.76	gold quality
sural nerve	UBERON:0015488	55.29	silver quality
pancreas	UBERON:0001264	55.15	gold quality
ectocervix	UBERON:0012249	54.21	gold quality
blood	UBERON:0000178	53.97	gold quality
muscle layer of sigmoid colon	UBERON:0035805	53.63	gold quality
bone marrow	UBERON:0002371	53.31	gold quality
upper lobe of left lung	UBERON:0008952	53.20	gold quality
body of pancreas	UBERON:0001150	52.76	gold quality
lymph node	UBERON:0000029	52.46	gold quality
hindlimb stylopod muscle	UBERON:0004252	52.45	silver quality
lung	UBERON:0002048	52.31	gold quality
endocervix	UBERON:0000458	52.23	gold quality
prefrontal cortex	UBERON:0000451	52.22	gold quality
colon	UBERON:0001155	51.95	gold quality
placenta	UBERON:0001987	51.76	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.78

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.