SEC62-AS1

Summary

SEC62-AS1 (SEC62 antisense RNA 1, HGNC:40586) is a long non-coding RNA gene on chromosome 3q26.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40586
Approved symbol	SEC62-AS1
Name	SEC62 antisense RNA 1
Location	3q26.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000240373
Ensembl biotype	lncRNA
Entrez	106478967
RNAcentral	URS000042901B — lncRNA, 346 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000479626

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000479626 — 2 exons

Exon	Start	End
ENSE00001837771	169978536	169978561
ENSE00001872696	169985396	169985715

Expression profiles

Bgee: expression breadth ubiquitous, 129 present calls, max score 84.55.

Top tissues by expression

129 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.55	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	81.62	gold quality
bone marrow cell	CL:0002092	74.94	gold quality
colonic epithelium	UBERON:0000397	73.83	gold quality
endometrium	UBERON:0001295	73.75	gold quality
bone marrow	UBERON:0002371	72.86	gold quality
calcaneal tendon	UBERON:0003701	72.41	gold quality
ventricular zone	UBERON:0003053	70.89	gold quality
skeletal muscle tissue	UBERON:0001134	70.33	gold quality
ganglionic eminence	UBERON:0004023	67.94	gold quality
duodenum	UBERON:0002114	67.70	gold quality
vermiform appendix	UBERON:0001154	67.07	gold quality
smooth muscle tissue	UBERON:0001135	66.68	gold quality
stromal cell of endometrium	CL:0002255	66.13	gold quality
monocyte	CL:0000576	65.59	gold quality
liver	UBERON:0002107	65.54	gold quality
body of pancreas	UBERON:0001150	65.45	gold quality
lymph node	UBERON:0000029	65.32	gold quality
placenta	UBERON:0001987	64.70	gold quality
pancreas	UBERON:0001264	64.38	gold quality
gall bladder	UBERON:0002110	64.09	gold quality
right lung	UBERON:0002167	64.03	gold quality
subcutaneous adipose tissue	UBERON:0002190	63.91	gold quality
blood	UBERON:0000178	63.60	gold quality
cortex of kidney	UBERON:0001225	63.31	gold quality
right lobe of liver	UBERON:0001114	63.29	gold quality
lower esophagus mucosa	UBERON:0035834	63.06	gold quality
right adrenal gland cortex	UBERON:0035827	63.00	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	62.90	gold quality
urinary bladder	UBERON:0001255	62.85	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.88

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.