SEMA6A-AS1

Summary

SEMA6A-AS1 (SEMA6A antisense RNA 1, HGNC:51110) is a long non-coding RNA gene on chromosome 5q23.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51110
Approved symbol	SEMA6A-AS1
Name	SEMA6A antisense RNA 1
Location	5q23.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248445
Ensembl biotype	lncRNA
Entrez	101927233
RNAcentral	URS000075CF29 — lncRNA, 967 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 16 lncRNA

ENST00000507558, ENST00000508424, ENST00000508640, ENST00000510682, ENST00000512128, ENST00000514214, ENST00000809356, ENST00000809357, ENST00000809358, ENST00000809359, ENST00000809360, ENST00000809361, ENST00000809362, ENST00000809363, ENST00000809364, ENST00000809365

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000507558 — 3 exons

Exon	Start	End
ENSE00002069452	116472269	116472638
ENSE00004205022	116471133	116471255
ENSE00004205062	116449774	116449817

Expression profiles

Bgee: expression breadth ubiquitous, 133 present calls, max score 96.69.

Top tissues by expression

133 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
corpus callosum	UBERON:0002336	96.69	gold quality
adrenal tissue	UBERON:0018303	95.10	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.89	gold quality
right adrenal gland cortex	UBERON:0035827	88.05	gold quality
right adrenal gland	UBERON:0001233	86.92	gold quality
rectum	UBERON:0001052	86.58	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	86.09	gold quality
adrenal gland	UBERON:0002369	86.07	gold quality
left adrenal gland cortex	UBERON:0035825	85.88	gold quality
right lung	UBERON:0002167	85.36	gold quality
left adrenal gland	UBERON:0001234	85.30	gold quality
sural nerve	UBERON:0015488	83.99	gold quality
left ovary	UBERON:0002119	83.09	gold quality
calcaneal tendon	UBERON:0003701	82.51	gold quality
body of pancreas	UBERON:0001150	82.44	gold quality
mucosa of stomach	UBERON:0001199	82.04	gold quality
ovary	UBERON:0000992	81.71	gold quality
right ovary	UBERON:0002118	81.71	gold quality
left testis	UBERON:0004533	81.30	gold quality
thoracic mammary gland	UBERON:0005200	81.29	gold quality
testis	UBERON:0000473	81.25	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	80.99	gold quality
right testis	UBERON:0004534	80.56	gold quality
small intestine	UBERON:0002108	80.51	gold quality
small intestine Peyer’s patch	UBERON:0003454	80.34	gold quality
tibial nerve	UBERON:0001323	80.31	gold quality
endocervix	UBERON:0000458	80.23	gold quality
tonsil	UBERON:0002372	80.09	gold quality
subcutaneous adipose tissue	UBERON:0002190	79.83	gold quality
endometrium	UBERON:0001295	79.78	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.92

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.