SEPTIN14
gene geneOn this page
Also known as FLJ44060Septin-14
Summary
SEPTIN14 (septin 14, HGNC:33280) is a protein-coding gene on chromosome 7p11.2, encoding Septin-14 (Q6ZU15). Filament-forming cytoskeletal GTPase.
SEPT14 is a member of the highly conserved septin family of GTP-binding cytoskeletal proteins implicated in membrane transport, apoptosis, cell polarity, cell cycle regulation, cytokinesis, and other cellular functions (Peterson et al., 2007 [PubMed 17922164]).
Source: NCBI Gene 346288 — RefSeq curated summary.
At a glance
- GWAS associations: 7
- Clinical variants (ClinVar): 82 total
- MANE Select transcript:
NM_207366
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:33280 |
| Approved symbol | SEPTIN14 |
| Name | septin 14 |
| Location | 7p11.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ44060, Septin-14 |
| Ensembl gene | ENSG00000154997 |
| Ensembl biotype | protein_coding |
| OMIM | 612140 |
| Entrez | 346288 |
Gene structure
Transcript identifiers
Ensembl transcripts: 2 — 1 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000388975, ENST00000477628
RefSeq mRNA: 1 — MANE Select: NM_207366
NM_207366
CCDS: CCDS5519
Canonical transcript exons
ENST00000388975 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001318337 | 55807090 | 55807258 |
| ENSE00001322761 | 55819127 | 55819223 |
| ENSE00001370673 | 55793540 | 55796092 |
| ENSE00001559769 | 55862688 | 55862752 |
| ENSE00001637631 | 55834425 | 55834586 |
| ENSE00001768335 | 55842942 | 55843128 |
| ENSE00001783435 | 55805258 | 55805390 |
| ENSE00001791209 | 55844523 | 55844718 |
| ENSE00003546018 | 55846517 | 55846637 |
| ENSE00003671928 | 55861943 | 55862011 |
Expression profiles
Bgee: expression breadth ubiquitous, 132 present calls, max score 83.99.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0344 / max 20.5082, expressed in 6 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 84170 | 0.0344 | 6 |
Top tissues by expression
138 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right testis | UBERON:0004534 | 83.99 | gold quality |
| left testis | UBERON:0004533 | 83.18 | gold quality |
| testis | UBERON:0000473 | 83.07 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 82.80 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 80.09 | gold quality |
| blood | UBERON:0000178 | 76.21 | gold quality |
| monocyte | CL:0000576 | 75.82 | gold quality |
| leukocyte | CL:0000738 | 74.95 | gold quality |
| thymus | UBERON:0002370 | 73.12 | silver quality |
| endometrium | UBERON:0001295 | 70.66 | gold quality |
| adenohypophysis | UBERON:0002196 | 67.89 | gold quality |
| pituitary gland | UBERON:0000007 | 67.83 | gold quality |
| right lobe of liver | UBERON:0001114 | 67.64 | gold quality |
| spleen | UBERON:0002106 | 66.79 | gold quality |
| cortical plate | UBERON:0005343 | 65.79 | gold quality |
| quadriceps femoris | UBERON:0001377 | 65.49 | gold quality |
| ventricular zone | UBERON:0003053 | 64.72 | gold quality |
| ganglionic eminence | UBERON:0004023 | 64.61 | gold quality |
| cerebellar vermis | UBERON:0004720 | 64.61 | gold quality |
| vermiform appendix | UBERON:0001154 | 64.38 | gold quality |
| body of pancreas | UBERON:0001150 | 63.70 | gold quality |
| left ovary | UBERON:0002119 | 63.21 | gold quality |
| esophagus mucosa | UBERON:0002469 | 63.21 | gold quality |
| calcaneal tendon | UBERON:0003701 | 63.00 | gold quality |
| right ovary | UBERON:0002118 | 62.95 | gold quality |
| granulocyte | CL:0000094 | 62.94 | gold quality |
| islet of Langerhans | UBERON:0000006 | 62.84 | gold quality |
| primary visual cortex | UBERON:0002436 | 62.79 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 62.62 | gold quality |
| pancreas | UBERON:0001264 | 62.54 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.26 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
106 targeting SEPTIN14, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-568 | 99.98 | 69.86 | 2084 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-3688-3P | 99.97 | 72.02 | 2834 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-4666A-3P | 99.96 | 71.71 | 3434 |
| HSA-MIR-2110 | 99.96 | 66.68 | 1930 |
| HSA-MIR-146A-5P | 99.96 | 68.93 | 988 |
| HSA-MIR-146B-5P | 99.96 | 69.13 | 977 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-7153-5P | 99.94 | 68.89 | 1006 |
| HSA-MIR-335-3P | 99.93 | 73.36 | 4958 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-10523-5P | 99.91 | 69.22 | 2038 |
| HSA-MIR-380-3P | 99.89 | 70.18 | 1978 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-182-5P | 99.87 | 74.03 | 2589 |
| HSA-MIR-6124 | 99.87 | 69.78 | 3551 |
Literature-anchored findings (GeneRIF, showing 4)
- SEPT14 maps to 7p11.2 and includes a conserved GTPase domain and a predicted carboxy-terminus coiled-coil domain characteristic of other septins. (PMID:17922164)
- The three SEPT14 SNPs defined a protective haplotype which significantly reduced the risk for Parkinson disease was found to be expressed in the brain. (PMID:27115672)
- Expression and localization of Septin 14 gene and protein in infertile men testis. (PMID:32249155)
- X-ray structure of the metastable SEPT14-SEPT7 coiled coil reveals a hendecad region crucial for heterodimerization. (PMID:37712436)
Cross-species orthologs
25 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | zgc:63587 | ENSDARG00000017140 |
| danio_rerio | si:ch211-250m6.12 | ENSDARG00000025046 |
| danio_rerio | ENSDARG00000030778 | |
| danio_rerio | ENSDARG00000039888 | |
| danio_rerio | si:dkey-187j14.4 | ENSDARG00000053761 |
| danio_rerio | zgc:195077 | ENSDARG00000070852 |
| danio_rerio | zgc:172075 | ENSDARG00000076146 |
| danio_rerio | si:ch211-285c6.1 | ENSDARG00000076257 |
| danio_rerio | si:dkey-201l21.4 | ENSDARG00000076398 |
| danio_rerio | zgc:172065 | ENSDARG00000078093 |
| danio_rerio | si:ch211-282j17.13 | ENSDARG00000086419 |
| danio_rerio | si:dkey-187j14.1 | ENSDARG00000087289 |
| danio_rerio | zgc:66473 | ENSDARG00000087375 |
| danio_rerio | si:ch211-285c6.4 | ENSDARG00000095410 |
| danio_rerio | si:ch73-170d6.2 | ENSDARG00000099864 |
| danio_rerio | ENSDARG00000100370 | |
| danio_rerio | zgc:171695 | ENSDARG00000100858 |
| danio_rerio | ENSDARG00000104895 | |
| danio_rerio | si:ch211-282j17.12 | ENSDARG00000105145 |
| danio_rerio | si:dkey-88n24.11 | ENSDARG00000105367 |
| mus_musculus | Septin14 | ENSMUSG00000034219 |
| rattus_norvegicus | Septin14 | ENSRNOG00000038495 |
| drosophila_melanogaster | Septin1 | FBGN0011710 |
| drosophila_melanogaster | Septin2 | FBGN0014029 |
| caenorhabditis_elegans | WBGENE00006795 |
Paralogs (12): SEPTIN3 (ENSG00000100167), SEPTIN7 (ENSG00000122545), SEPTIN6 (ENSG00000125354), SEPTIN11 (ENSG00000138758), SEPTIN12 (ENSG00000140623), SEPTIN8 (ENSG00000164402), SEPTIN2 (ENSG00000168385), SEPTIN1 (ENSG00000180096), SEPTIN9 (ENSG00000184640), SEPTIN5 (ENSG00000184702), SEPTIN10 (ENSG00000186522), TMEM250 (ENSG00000238227)
Protein
Protein identifiers
Septin-14 — Q6ZU15 (reviewed: Q6ZU15)
All UniProt accessions (1): Q6ZU15
UniProt curated annotations — full annotation on UniProt →
Function. Filament-forming cytoskeletal GTPase. Involved in the migration of cortical neurons and the formation of neuron leading processes during embryonic development. Plays a role in sperm head formation during spermiogenesis, potentially via facilitating localization of ACTN4 to cell filaments.
Subunit / interactions. Septins polymerize into heterooligomeric protein complexes that form filaments, and can associate with cellular membranes, actin filaments and microtubules. GTPase activity is required for filament formation. Interacts with ACTN4. Interacts with SEPTIN9. Interacts (via C-terminus) with SEPTIN4.
Subcellular location. Cytoplasm. Cytoskeleton. Cell projection. Axon. Dendrite. Perikaryon. Perinuclear region. Cytoplasmic vesicle. Secretory vesicle. Acrosome.
Tissue specificity. Testis-specific (at protein level).
Similarity. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.
RefSeq proteins (1): NP_997249* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR016491 | Septin | Family |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR030379 | G_SEPTIN_dom | Domain |
Pfam: PF00735
UniProt features (15 total): binding site 5, region of interest 4, sequence variant 2, chain 1, domain 1, helix 1, coiled-coil region 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8SJJ | X-RAY DIFFRACTION | 1.78 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6ZU15-F1 | 81.91 | 0.40 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (5): 249; 264; 59–66; 114; 195–203
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 69 (showing top):
GOCC_SECRETORY_GRANULE, GOBP_NEUROGENESIS, GOBP_MALE_GAMETE_GENERATION, GOBP_CYTOKINESIS, GOBP_CELLULAR_PROCESS_INVOLVED_IN_REPRODUCTION_IN_MULTICELLULAR_ORGANISM, GOBP_NEURON_MIGRATION, GOBP_DEVELOPMENTAL_PROCESS_INVOLVED_IN_REPRODUCTION, GOCC_NEURON_PROJECTION, GOBP_CYTOSKELETON_DEPENDENT_CYTOKINESIS, GOCC_SECRETORY_VESICLE, GOBP_CELL_DIVISION, GOCC_CELL_DIVISION_SITE, GOCC_ACROSOMAL_VESICLE, GOCC_CELL_BODY, GOCC_SOMATODENDRITIC_COMPARTMENT
GO Biological Process (6): neuron migration (GO:0001764), spermatid development (GO:0007286), intracellular protein localization (GO:0008104), cytoskeleton-dependent cytokinesis (GO:0061640), protein localization to perinuclear region of cytoplasm (GO:1905719), cell division (GO:0051301)
GO Molecular Function (5): GTPase activity (GO:0003924), GTP binding (GO:0005525), molecular adaptor activity (GO:0060090), nucleotide binding (GO:0000166), protein binding (GO:0005515)
GO Cellular Component (13): acrosomal vesicle (GO:0001669), cytoplasm (GO:0005737), cytoskeleton (GO:0005856), septin ring (GO:0005940), microtubule cytoskeleton (GO:0015630), axon (GO:0030424), dendrite (GO:0030425), septin complex (GO:0031105), cell division site (GO:0032153), perikaryon (GO:0043204), perinuclear region of cytoplasm (GO:0048471), cytoplasmic vesicle (GO:0031410), cell projection (GO:0042995)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 5 |
| binding | 2 |
| cytoskeleton | 2 |
| cell cortex | 2 |
| septin cytoskeleton | 2 |
| neuron projection | 2 |
| cytoplasm | 2 |
| cell migration | 1 |
| generation of neurons | 1 |
| germ cell development | 1 |
| spermatid differentiation | 1 |
| macromolecule localization | 1 |
| cytokinesis | 1 |
| intracellular protein localization | 1 |
| cellular process | 1 |
| ribonucleoside triphosphate phosphatase activity | 1 |
| guanyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| molecular_function | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| secretory granule | 1 |
| intracellular anatomical structure | 1 |
| intracellular membraneless organelle | 1 |
| dendritic tree | 1 |
| protein-containing complex | 1 |
| neuronal cell body | 1 |
| intracellular vesicle | 1 |
Protein interactions and networks
STRING
390 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SEPTIN14 | SEPTIN4 | O43236 | 638 |
| SEPTIN14 | LANCL2 | Q9NS86 | 570 |
| SEPTIN14 | PSPH | P78330 | 533 |
| SEPTIN14 | SEC61G | P38384 | 525 |
| SEPTIN14 | TACC3 | Q9Y6A5 | 519 |
| SEPTIN14 | ZNF713 | Q8N859 | 507 |
| SEPTIN14 | VOPP1 | Q96AW1 | 496 |
| SEPTIN14 | SEPTIN9 | Q9UHD8 | 475 |
| SEPTIN14 | VSTM2A | Q8TAG5 | 452 |
| SEPTIN14 | SUMF2 | Q8NBJ7 | 445 |
| SEPTIN14 | TACC1 | O75410 | 418 |
| SEPTIN14 | NIPSNAP2 | O75323 | 407 |
| SEPTIN14 | SEPTIN8 | Q92599 | 403 |
| SEPTIN14 | EGFR | P00533 | 398 |
| SEPTIN14 | SEPTIN10 | Q9P0V9 | 396 |
IntAct
47 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SEPTIN7 | SEPTIN6 | psi-mi:“MI:0914”(association) | 0.850 |
| SEPTIN3 | SEPTIN6 | psi-mi:“MI:0914”(association) | 0.800 |
| SEPTIN11 | SEPTIN2 | psi-mi:“MI:0914”(association) | 0.740 |
| SEPTIN14 | GORASP2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SEPTIN14 | NTAQ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SEPTIN14 | VPS25 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SEPTIN14 | ARMC7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SEPTIN14 | FAM124B | psi-mi:“MI:0915”(physical association) | 0.560 |
| SEPTIN14 | SEPTIN2 | psi-mi:“MI:0915”(physical association) | 0.550 |
| SEPTIN14 | SEPTIN7 | psi-mi:“MI:0915”(physical association) | 0.550 |
| SEPTIN9 | SEPTIN14 | psi-mi:“MI:0915”(physical association) | 0.540 |
| SEPTIN9 | SEPTIN14 | psi-mi:“MI:0403”(colocalization) | 0.540 |
| SEPTIN14 | SEPTIN9 | psi-mi:“MI:0915”(physical association) | 0.540 |
| CDC42EP4 | SEPTIN6 | psi-mi:“MI:0914”(association) | 0.530 |
| SEPTIN10 | SEPTIN2 | psi-mi:“MI:0914”(association) | 0.530 |
| SEPTIN14 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| SEPTIN14 | SEPTIN9 | psi-mi:“MI:0915”(physical association) | 0.370 |
| SEPTIN9 | SEPTIN14 | psi-mi:“MI:0915”(physical association) | 0.370 |
| SEPTIN1 | SEPTIN14 | psi-mi:“MI:0915”(physical association) | 0.370 |
| SEPTIN14 | Septin3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| SEPTIN4 | SEPTIN14 | psi-mi:“MI:0915”(physical association) | 0.370 |
| Septin11 | SEPTIN14 | psi-mi:“MI:0915”(physical association) | 0.370 |
| Septin12 | SEPTIN14 | psi-mi:“MI:0915”(physical association) | 0.370 |
| SEPTIN6 | SEPTIN4 | psi-mi:“MI:0914”(association) | 0.350 |
| SEPTIN7 | SEPTIN4 | psi-mi:“MI:0914”(association) | 0.350 |
| CDC42EP4 | SEPTIN4 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (46): SEPT14 (Affinity Capture-MS), SEPT14 (Affinity Capture-MS), SEPT14 (Affinity Capture-MS), SEPT14 (Affinity Capture-MS), SEPT14 (Affinity Capture-MS), SEPT14 (Affinity Capture-MS), SEPT14 (Affinity Capture-MS), SEPT14 (Two-hybrid), SEPT14 (Two-hybrid), SEPT14 (Two-hybrid), SEPT14 (Two-hybrid), WDYHV1 (Two-hybrid), SEPT14 (Protein-RNA), SEPT14 (Affinity Capture-MS), DCTN1 (Affinity Capture-MS)
ESM2 similar proteins: A0A0G2JDV3, A0MWD1, A1E2I4, A4UUI3, A6QQL3, A7VK00, B0BNF1, B0KWP7, B1H120, B1MTN8, B2KIE9, B3GNI6, B5FW69, P20591, P20592, P32455, P32456, Q01514, Q0VCP4, Q14141, Q1MT80, Q28379, Q2KTC2, Q3SZN0, Q4R555, Q5D1D6, Q5I2P5, Q5R5G3, Q5R9T9, Q5RBE1, Q61107, Q63663, Q642H3, Q6AXA6, Q6IRQ5, Q6ZN66, Q6ZU15, Q8C1B7, Q8C650, Q8CFB4
Diamond homologs: A0A096MJN4, A0A3Q0KDV9, A1L0Y5, A2BGU8, A2VE99, A4FUM1, A5D7Q3, A5PJU9, A6QQL3, B0BNF1, B0KWP7, B1H120, B1MTN8, B2KIE9, B3GNI6, B5FW69, G1UB61, O36023, O43236, O55131, O60165, P25342, P28661, P32457, P32458, P32468, P39826, P39827, P40797, P41901, P42207, P42208, P42209, P48008, P48009, P48010, P54359, Q04921, Q08DM7, Q09116
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 25 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| cytoskeleton-dependent cytokinesis | 9 | 361.1× | 2e-20 |
| intracellular protein localization | 9 | 47.1× | 4e-12 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
82 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 65 |
| Likely benign | 7 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2034 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:55805256:A:AC | donor_gain | 1.0000 |
| 7:55805256:ACCT:A | donor_gain | 1.0000 |
| 7:55805257:C:CC | donor_gain | 1.0000 |
| 7:55805257:CCT:C | donor_gain | 1.0000 |
| 7:55805257:CCTC:C | donor_gain | 1.0000 |
| 7:55805389:AA:A | acceptor_gain | 1.0000 |
| 7:55805391:C:CC | acceptor_gain | 1.0000 |
| 7:55807256:CCA:C | acceptor_gain | 1.0000 |
| 7:55807257:CAC:C | acceptor_gain | 1.0000 |
| 7:55807259:C:CC | acceptor_gain | 1.0000 |
| 7:55834418:AACTT:A | donor_loss | 1.0000 |
| 7:55834419:ACTT:A | donor_loss | 1.0000 |
| 7:55834420:CTT:C | donor_loss | 1.0000 |
| 7:55834423:A:AC | donor_gain | 1.0000 |
| 7:55834423:A:C | donor_loss | 1.0000 |
| 7:55834424:C:CC | donor_gain | 1.0000 |
| 7:55834424:CA:C | donor_gain | 1.0000 |
| 7:55834424:CACTA:C | donor_gain | 1.0000 |
| 7:55834429:A:AC | donor_gain | 1.0000 |
| 7:55834430:C:CC | donor_gain | 1.0000 |
| 7:55834583:TCACC:T | acceptor_loss | 1.0000 |
| 7:55834584:CACCT:C | acceptor_loss | 1.0000 |
| 7:55834586:CCT:C | acceptor_loss | 1.0000 |
| 7:55834587:C:A | acceptor_loss | 1.0000 |
| 7:55834588:T:G | acceptor_loss | 1.0000 |
| 7:55843124:GGTAG:G | acceptor_gain | 1.0000 |
| 7:55843125:GTAG:G | acceptor_gain | 1.0000 |
| 7:55843126:TAG:T | acceptor_gain | 1.0000 |
| 7:55843127:AG:A | acceptor_gain | 1.0000 |
| 7:55843129:C:CC | acceptor_gain | 1.0000 |
AlphaMissense
2902 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:55819153:C:G | R264P | 0.991 |
| 7:55807222:C:G | R285P | 0.990 |
| 7:55843019:A:G | C161R | 0.989 |
| 7:55834564:G:T | A194D | 0.988 |
| 7:55843031:G:T | R157S | 0.988 |
| 7:55819142:A:G | W268R | 0.987 |
| 7:55819142:A:T | W268R | 0.987 |
| 7:55807189:A:G | L296P | 0.986 |
| 7:55807225:A:G | L284P | 0.986 |
| 7:55846517:C:A | G59W | 0.986 |
| 7:55807149:C:A | R309S | 0.985 |
| 7:55807149:C:G | R309S | 0.985 |
| 7:55819154:G:T | R264S | 0.984 |
| 7:55807150:C:G | R309T | 0.983 |
| 7:55843030:C:G | R157P | 0.983 |
| 7:55844718:C:T | G59E | 0.983 |
| 7:55844718:C:A | G59V | 0.982 |
| 7:55846517:C:G | G59R | 0.981 |
| 7:55846517:C:T | G59R | 0.981 |
| 7:55807150:C:A | R309M | 0.980 |
| 7:55819207:G:T | A246D | 0.980 |
| 7:55834521:C:A | K208N | 0.980 |
| 7:55834521:C:G | K208N | 0.980 |
| 7:55843017:A:C | C161W | 0.980 |
| 7:55843081:A:G | L140P | 0.979 |
| 7:55819156:C:T | G263D | 0.978 |
| 7:55834559:C:G | A196P | 0.977 |
| 7:55846525:A:G | L56P | 0.977 |
| 7:55807213:A:G | L288P | 0.976 |
| 7:55843031:G:C | R157G | 0.976 |
dbSNP variants (sampled 300 via entrez): RS1000035751 (7:55837514 A>G), RS1000078598 (7:55837596 T>C), RS1000256008 (7:55832147 G>A), RS1000366933 (7:55825042 C>T), RS1000403494 (7:55840870 C>T), RS1000468260 (7:55834373 T>C), RS1000585565 (7:55831665 A>G), RS1000647984 (7:55827433 G>A), RS1000660277 (7:55802860 G>C), RS1000694137 (7:55826548 AG>A), RS1000705563 (7:55826363 C>T), RS1000774868 (7:55803073 G>A), RS1000827336 (7:55861360 G>A), RS1000835061 (7:55855778 G>C,T), RS1000997157 (7:55833463 C>G)
Disease associations
OMIM: gene MIM:612140 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST005998_16 | Alanine transaminase levels | 4.000000e-09 |
| GCST007382_26 | Plasma free amino acid levels (adjusted for twenty other PFAAs) | 4.000000e-19 |
| GCST007385_13 | Plasma free amino acid levels | 9.000000e-17 |
| GCST009796_2 | Opioid use cessation | 1.000000e-06 |
| GCST012251_16 | Macular telangiectasia type 2 | 3.000000e-07 |
| GCST012252_7 | Macular telangiectasia type 2 | 6.000000e-09 |
| GCST90000025_348 | Appendicular lean mass | 2.000000e-16 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005134 | amino acid measurement |
| EFO:0009774 | serine measurement |
| EFO:0009937 | Opioid use measurement |
| EFO:1002009 | macular telangiectasia type 2 |
| EFO:0004980 | appendicular lean mass |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
9 total (human), top 9 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| butyraldehyde | decreases expression | 1 |
| MT19c compound | increases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Air Pollutants | decreases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Clozapine | decreases expression | 1 |
| Plant Extracts | affects cotreatment, increases expression | 1 |
| Silicon Dioxide | decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.