SERPINB8
gene geneOn this page
Also known as CAP2
Summary
SERPINB8 (serpin family B member 8, HGNC:8952) is a protein-coding gene on chromosome 18q22.1, encoding Serpin B8 (P50452). Has an important role in epithelial desmosome-mediated cell-cell adhesion.
The protein encoded by this gene is a member of the ov-serpin family of serine protease inhibitors. The encoded protein is produced by platelets and can bind to and inhibit the function of furin, a serine protease involved in platelet functions. In addition, this protein has been found to enhance the mechanical stability of cell-cell adhesion in the skin, and defects in this gene have been associated with an autosomal-recessive form of exfoliative ichthyosis.
Source: NCBI Gene 5271 — RefSeq curated summary.
At a glance
- Gene–disease (curated): peeling skin syndrome 5 (Strong, GenCC) — +1 more curated relationship
- GWAS associations: 1
- Clinical variants (ClinVar): 108 total — 1 pathogenic, 2 likely-pathogenic
- Phenotypes (HPO): 22
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_002640
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:8952 |
| Approved symbol | SERPINB8 |
| Name | serpin family B member 8 |
| Location | 18q22.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CAP2 |
| Ensembl gene | ENSG00000166401 |
| Ensembl biotype | protein_coding |
| OMIM | 601697 |
| Entrez | 5271 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 10 protein_coding
ENST00000295211, ENST00000353706, ENST00000397985, ENST00000397988, ENST00000441827, ENST00000448851, ENST00000493661, ENST00000542677, ENST00000636430, ENST00000858461
RefSeq mRNA: 9 — MANE Select: NM_002640
NM_001031848, NM_001276490, NM_001348367, NM_001348368, NM_001348369, NM_001348370, NM_001366198, NM_002640, NM_198833
CCDS: CCDS11991, CCDS42442, CCDS62460, CCDS86678
Canonical transcript exons
ENST00000397985 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000670292 | 63985093 | 63985245 |
| ENSE00001531067 | 63970081 | 63970170 |
| ENSE00001896189 | 63986874 | 63989374 |
| ENSE00003546250 | 63978299 | 63978476 |
| ENSE00003573671 | 63979801 | 63979938 |
| ENSE00003576294 | 63981721 | 63981838 |
| ENSE00003663827 | 63983579 | 63983721 |
Expression profiles
Bgee: expression breadth ubiquitous, 185 present calls, max score 94.28.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 9.6657 / max 195.8905, expressed in 1607 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 170666 | 9.6657 | 1607 |
Top tissues by expression
290 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| monocyte | CL:0000576 | 94.28 | gold quality |
| skin of leg | UBERON:0001511 | 93.91 | gold quality |
| mononuclear cell | CL:0000842 | 93.67 | gold quality |
| leukocyte | CL:0000738 | 93.41 | gold quality |
| skin of abdomen | UBERON:0001416 | 92.29 | gold quality |
| zone of skin | UBERON:0000014 | 91.25 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 90.84 | gold quality |
| esophagus mucosa | UBERON:0002469 | 89.02 | gold quality |
| granulocyte | CL:0000094 | 88.86 | gold quality |
| gall bladder | UBERON:0002110 | 87.04 | gold quality |
| islet of Langerhans | UBERON:0000006 | 86.25 | gold quality |
| gingival epithelium | UBERON:0001949 | 84.88 | silver quality |
| descending thoracic aorta | UBERON:0002345 | 84.87 | gold quality |
| tibial artery | UBERON:0007610 | 84.44 | gold quality |
| popliteal artery | UBERON:0002250 | 84.42 | gold quality |
| artery | UBERON:0001637 | 83.87 | gold quality |
| aorta | UBERON:0000947 | 83.55 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 83.44 | gold quality |
| gingiva | UBERON:0001828 | 83.32 | silver quality |
| calcaneal tendon | UBERON:0003701 | 83.25 | gold quality |
| esophagus | UBERON:0001043 | 83.20 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 83.09 | gold quality |
| thoracic aorta | UBERON:0001515 | 82.99 | gold quality |
| stromal cell of endometrium | CL:0002255 | 82.95 | gold quality |
| ascending aorta | UBERON:0001496 | 82.82 | gold quality |
| right lung | UBERON:0002167 | 82.58 | gold quality |
| left coronary artery | UBERON:0001626 | 82.24 | gold quality |
| upper lobe of lung | UBERON:0008948 | 82.06 | gold quality |
| right coronary artery | UBERON:0001625 | 82.02 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 81.85 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-112 | yes | 18.75 |
| E-ENAD-17 | no | 172.36 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
32 targeting SERPINB8, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-6856-5P | 100.00 | 65.47 | 1298 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-4745-5P | 99.98 | 65.95 | 1028 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-4306 | 99.72 | 70.50 | 3630 |
| HSA-MIR-24-3P | 99.59 | 69.97 | 1934 |
| HSA-MIR-3612 | 99.45 | 66.02 | 1333 |
| HSA-MIR-650 | 99.45 | 65.77 | 1309 |
| HSA-MIR-185-5P | 99.35 | 68.60 | 2497 |
| HSA-MIR-4644 | 99.35 | 69.12 | 2514 |
| HSA-MIR-6731-5P | 99.28 | 67.42 | 2375 |
| HSA-MIR-8085 | 99.28 | 67.56 | 2362 |
| HSA-MIR-664A-3P | 99.22 | 71.08 | 2696 |
| HSA-MIR-4254 | 99.11 | 65.15 | 1315 |
| HSA-MIR-452-3P | 99.01 | 66.25 | 1241 |
| HSA-MIR-6770-5P | 98.97 | 66.76 | 1853 |
| HSA-MIR-6852-3P | 98.54 | 67.60 | 1468 |
| HSA-MIR-6873-5P | 98.45 | 66.14 | 1417 |
| HSA-MIR-506-5P | 98.02 | 67.41 | 1065 |
| HSA-MIR-3127-5P | 97.52 | 65.24 | 786 |
| HSA-MIR-214-5P | 97.34 | 66.50 | 617 |
| HSA-MIR-12128 | 96.67 | 66.98 | 1471 |
| HSA-MIR-4652-5P | 96.46 | 64.22 | 553 |
| HSA-MIR-6823-5P | 96.26 | 65.69 | 919 |
Literature-anchored findings (GeneRIF, showing 5)
- PI8 is released by platelets and controls functional responses (PMID:16493485)
- Data show that SERPINB8 is expressed in normal neuroendocrine cells of several organs as well as in neuroendocrine tumors of the pancreas, where it can be used as an additional diagnostic immunohistochemical marker. (PMID:19188865)
- report of mutations in SERPINB8 that are associated with exfoliative ichthyosis and provide evidence that SERPINB8 contributes to the mechanical stability of intercellular adhesions in the epidermis (PMID:27476651)
- SERPINB8 and furin regulate ITGAX expression and affect the proliferation and invasion of melanoma cells. (PMID:36134483)
- Inhibition of Infectious HIV-1 Production by Rerouting the Cellular Furin Inhibitor Serpin B8. (PMID:37272794)
Cross-species orthologs
7 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | serpinb1l3 | ENSDARG00000014556 |
| danio_rerio | zgc:173729 | ENSDARG00000057263 |
| danio_rerio | serpinb14 | ENSDARG00000091801 |
| danio_rerio | serpinb1l1 | ENSDARG00000095830 |
| danio_rerio | serpinb1l4 | ENSDARG00000096888 |
| mus_musculus | Serpinb8 | ENSMUSG00000026315 |
| rattus_norvegicus | Serpinb8 | ENSRNOG00000002396 |
Paralogs (36): SERPINB1 (ENSG00000021355), SERPINB3 (ENSG00000057149), SERPIND1 (ENSG00000099937), SERPINA4 (ENSG00000100665), SERPINE1 (ENSG00000106366), SERPINI2 (ENSG00000114204), SERPINC1 (ENSG00000117601), SERPINA7 (ENSG00000123561), SERPINB6 (ENSG00000124570), SERPINF1 (ENSG00000132386), AGT (ENSG00000135744), SERPINE2 (ENSG00000135919), SERPINA10 (ENSG00000140093), SERPING1 (ENSG00000149131), SERPINH1 (ENSG00000149257), SERPINI1 (ENSG00000163536), SERPINA12 (ENSG00000165953), SERPINB7 (ENSG00000166396), SERPINB12 (ENSG00000166634), SERPINF2 (ENSG00000167711), SERPINA9 (ENSG00000170054), SERPINA6 (ENSG00000170099), SERPINB9 (ENSG00000170542), SERPINA11 (ENSG00000186910), SERPINA5 (ENSG00000188488), SERPINA3 (ENSG00000196136), SERPINA1 (ENSG00000197249), SERPINB2 (ENSG00000197632), SERPINB13 (ENSG00000197641), SERPINB11 (ENSG00000206072), SERPINB4 (ENSG00000206073), SERPINB5 (ENSG00000206075), HMSD (ENSG00000221887), SERPINB10 (ENSG00000242550), SERPINE3 (ENSG00000253309), SERPINA2 (ENSG00000258597)
Protein
Protein identifiers
Serpin B8 — P50452 (reviewed: P50452)
Alternative names: Cytoplasmic antiproteinase 2, Peptidase inhibitor 8
All UniProt accessions (6): A0A087WTX6, A0A1B0GU38, C9JTJ8, P50452, C9JVA8, H7BXK7
UniProt curated annotations — full annotation on UniProt →
Function. Has an important role in epithelial desmosome-mediated cell-cell adhesion.
Subcellular location. Cytoplasm.
Disease relevance. Peeling skin syndrome 5 (PSS5) [MIM:617115] A form of peeling skin syndrome, a genodermatosis characterized by generalized, continuous shedding of the outer layers of the epidermis. Two main PSS subtypes have been suggested. Patients with non-inflammatory PSS (type A) manifest white scaling, with painless and easy removal of the skin, irritation when in contact with water, dust and sand, and no history of erythema, pruritis or atopy. Inflammatory PSS (type B) is associated with generalized erythema, pruritus and atopy. It is an ichthyosiform erythroderma characterized by lifelong patchy peeling of the entire skin with onset at birth or shortly after. Several patients have been reported with high IgE levels. PSS5 patients manifest hyperkeratosis and superficial peeling of areas of the palmar and dorsal faces of hands and feet. Additional variable features include erythema, superficial scaling of forearms and legs and diffuse yellowish hyperkeratotic palmoplantar plaques. PSS5 inheritance is autosomal recessive. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the serpin family. Ov-serpin subfamily.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P50452-1 | 1 | yes |
| P50452-2 | 2 | |
| P50452-3 | 3 |
RefSeq proteins (9): NP_001027018, NP_001263419, NP_001335296, NP_001335297, NP_001335298, NP_001335299, NP_001353127, NP_002631, NP_942130 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000215 | Serpin_fam | Family |
| IPR023795 | Serpin_CS | Conserved_site |
| IPR023796 | Serpin_dom | Domain |
| IPR036186 | Serpin_sf | Homologous_superfamily |
| IPR042178 | Serpin_sf_1 | Homologous_superfamily |
| IPR042185 | Serpin_sf_2 | Homologous_superfamily |
Pfam: PF00079
UniProt features (8 total): sequence variant 4, splice variant 2, chain 1, site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P50452-F1 | 91.48 | 0.82 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 339–340 (reactive bond)
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-75205 | Dissolution of Fibrin Clot |
| R-HSA-109582 | Hemostasis |
MSigDB gene sets: 436 (showing top):
WAMUNYOKOLI_OVARIAN_CANCER_LMP_DN, MODULE_52, GOBP_NEGATIVE_REGULATION_OF_PROTEOLYSIS, YAGI_AML_WITH_INV_16_TRANSLOCATION, GOBP_ESTABLISHMENT_OR_MAINTENANCE_OF_CELL_POLARITY, ENK_UV_RESPONSE_KERATINOCYTE_UP, GOBP_NEGATIVE_REGULATION_OF_HYDROLASE_ACTIVITY, KAAB_HEART_ATRIUM_VS_VENTRICLE_UP, GOZGIT_ESR1_TARGETS_DN, ASTON_MAJOR_DEPRESSIVE_DISORDER_DN, GAUSSMANN_MLL_AF4_FUSION_TARGETS_G_DN, GOBP_POSITIVE_REGULATION_OF_LYASE_ACTIVITY, FRASOR_RESPONSE_TO_SERM_OR_FULVESTRANT_DN, NAGASHIMA_NRG1_SIGNALING_UP, PATIL_LIVER_CANCER
GO Biological Process (2): negative regulation of endopeptidase activity (GO:0010951), epithelial cell-cell adhesion (GO:0090136)
GO Molecular Function (3): serine-type endopeptidase inhibitor activity (GO:0004867), protein binding (GO:0005515), peptidase inhibitor activity (GO:0030414)
GO Cellular Component (5): obsolete extracellular space (GO:0005615), cytoplasm (GO:0005737), cytosol (GO:0005829), extracellular matrix (GO:0031012), extracellular exosome (GO:0070062)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Hemostasis | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| endopeptidase activity | 1 |
| negative regulation of peptidase activity | 1 |
| regulation of endopeptidase activity | 1 |
| cell-cell adhesion | 1 |
| serine-type endopeptidase activity | 1 |
| endopeptidase inhibitor activity | 1 |
| binding | 1 |
| enzyme inhibitor activity | 1 |
| peptidase activity | 1 |
| peptidase regulator activity | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| external encapsulating structure | 1 |
| extracellular vesicle | 1 |
Protein interactions and networks
STRING
804 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SERPINB8 | ZNF816 | Q0VGE8 | 628 |
| SERPINB8 | CSMD1 | Q96PZ7 | 535 |
| SERPINB8 | TNIP1 | Q15025 | 435 |
| SERPINB8 | GZMB | P10144 | 420 |
| SERPINB8 | PRF1 | P14222 | 407 |
| SERPINB8 | ERAP1 | Q9NZ08 | 406 |
| SERPINB8 | PTTG1 | O95997 | 384 |
| SERPINB8 | GJB2 | P29033 | 375 |
| SERPINB8 | IL13 | P35225 | 374 |
| SERPINB8 | IFNG | P01579 | 372 |
| SERPINB8 | PI3 | P19957 | 370 |
| SERPINB8 | SERPINB6 | P35237 | 366 |
| SERPINB8 | TNF | P01375 | 364 |
| SERPINB8 | CD4 | P01730 | 359 |
| SERPINB8 | PROZ | P22891 | 357 |
IntAct
77 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| POLR2L | RCCD1 | psi-mi:“MI:0914”(association) | 0.640 |
| CFAP298 | PEX7 | psi-mi:“MI:0914”(association) | 0.620 |
| CDKL5 | SERPINB8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TBC1D22B | A2ML1 | psi-mi:“MI:0914”(association) | 0.530 |
| SERPINB8 | TOX4 | psi-mi:“MI:0914”(association) | 0.530 |
| NHLH2 | AP3B1 | psi-mi:“MI:0914”(association) | 0.530 |
| NDUFS5 | NDUFS4 | psi-mi:“MI:0914”(association) | 0.530 |
| ZIC1 | CTSV | psi-mi:“MI:0914”(association) | 0.530 |
| SPICE1 | SERPINB2 | psi-mi:“MI:0914”(association) | 0.530 |
| FANCD2OS | CNOT1 | psi-mi:“MI:0914”(association) | 0.530 |
| TAS2R8 | SERPINB8 | psi-mi:“MI:0915”(physical association) | 0.400 |
| ATN1 | SERPINB8 | psi-mi:“MI:0915”(physical association) | 0.400 |
| WDR33 | SERPINB8 | psi-mi:“MI:0915”(physical association) | 0.400 |
| AGPS | psi-mi:“MI:0915”(physical association) | 0.400 | |
| CDK15 | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| GPATCH2L | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| FCF1 | SULT2B1 | psi-mi:“MI:0914”(association) | 0.350 |
| ZRSR2 | U2SURP | psi-mi:“MI:0914”(association) | 0.350 |
| CDKL5 | DHX16 | psi-mi:“MI:0914”(association) | 0.350 |
| SERPINB6 | PLAT | psi-mi:“MI:0914”(association) | 0.350 |
| PRKCE | PRPSAP2 | psi-mi:“MI:0914”(association) | 0.350 |
| P | psi-mi:“MI:0914”(association) | 0.350 | |
| TIFAB | DDX3X | psi-mi:“MI:0914”(association) | 0.350 |
| ATG16L1 | psi-mi:“MI:0914”(association) | 0.350 | |
| ANKRD39 | UBA6 | psi-mi:“MI:0914”(association) | 0.350 |
| VAMP4 | NBAS | psi-mi:“MI:0914”(association) | 0.350 |
| OR13C3 | POTEF | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (98): SERPINB8 (Affinity Capture-MS), SERPINB8 (Affinity Capture-MS), SERPINB8 (Affinity Capture-MS), CTH (Co-fractionation), ITPA (Co-fractionation), SERPINB8 (Co-fractionation), SERPINB8 (Co-fractionation), SERPINB8 (Co-fractionation), SERPINB8 (Affinity Capture-MS), SERPINB8 (Affinity Capture-MS), SERPINB8 (Affinity Capture-MS), SERPINB8 (Affinity Capture-MS), NONO (Affinity Capture-MS), SERPINB8 (Affinity Capture-MS), SERPINB8 (Affinity Capture-MS)
ESM2 similar proteins: O00394, O02739, O08800, O54757, O54758, O54759, O54760, O54761, O54762, O54763, P01009, P01010, P05619, P07758, P12725, P17475, P22324, P22325, P22599, P23035, P29508, P30740, P34955, P35237, P38029, P48594, P50447, P50452, P50453, P80229, P97277, Q00896, Q00897, Q00898, Q09055, Q1JPB0, Q4G075, Q4R3G2, Q52L45, Q5BIR5
Diamond homologs: A0A090BX51, A0A0K8RCY5, A0A0K8RJ89, A0A0K8RJV9, A5PJK0, A9RA96, B0CMB0, B1MTB7, B1MTC3, B2KI30, B3RFC3, B4USX2, E2RVI8, O02739, O08800, O35684, O54757, O54758, O54759, O54760, O73790, O73860, O75635, O75830, P01008, P01011, P01012, P01014, P05120, P05619, P12388, P17475, P19104, P22323, P22325, P22922, P23035, P29508, P29524, P30740
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
108 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 2 |
| Uncertain significance | 58 |
| Likely benign | 20 |
| Benign | 21 |
Top pathogenic / likely-pathogenic (3)
| Variant ID | HGVS | Classification |
|---|---|---|
| 254199 | NM_002640.4(SERPINB8):c.2T>C (p.Met1Thr) | Pathogenic |
| 2585175 | NM_002640.4(SERPINB8):c.270del (p.Asn90fs) | Likely pathogenic |
| 3780595 | NM_002640.4(SERPINB8):c.820G>T (p.Glu274Ter) | Likely pathogenic |
SpliceAI
1018 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 18:63970168:G:GT | donor_gain | 1.0000 |
| 18:63979939:G:GG | donor_gain | 1.0000 |
| 18:63981712:T:TA | acceptor_gain | 1.0000 |
| 18:63981716:TGCAG:T | acceptor_gain | 1.0000 |
| 18:63981717:GCAGG:G | acceptor_gain | 1.0000 |
| 18:63981718:CAGGA:C | acceptor_gain | 1.0000 |
| 18:63981719:A:AG | acceptor_gain | 1.0000 |
| 18:63981719:AG:A | acceptor_gain | 1.0000 |
| 18:63981719:AGGAC:A | acceptor_gain | 1.0000 |
| 18:63981720:G:A | acceptor_gain | 1.0000 |
| 18:63981720:G:GA | acceptor_gain | 1.0000 |
| 18:63981720:GGA:G | acceptor_gain | 1.0000 |
| 18:63981720:GGAC:G | acceptor_gain | 1.0000 |
| 18:63981720:GGACT:G | acceptor_gain | 1.0000 |
| 18:63981801:G:GT | donor_gain | 1.0000 |
| 18:63981835:GAAG:G | donor_gain | 1.0000 |
| 18:63981836:AAGGT:A | donor_loss | 1.0000 |
| 18:63981837:AGGTG:A | donor_loss | 1.0000 |
| 18:63981838:GGTG:G | donor_loss | 1.0000 |
| 18:63981839:G:GG | donor_gain | 1.0000 |
| 18:63981839:GT:G | donor_loss | 1.0000 |
| 18:63985089:TTAG:T | acceptor_loss | 1.0000 |
| 18:63985090:TA:T | acceptor_loss | 1.0000 |
| 18:63985091:A:AG | acceptor_gain | 1.0000 |
| 18:63985092:G:GG | acceptor_gain | 1.0000 |
| 18:63985092:G:GT | acceptor_loss | 1.0000 |
| 18:63985243:GTG:G | donor_gain | 1.0000 |
| 18:63985246:G:GA | donor_loss | 1.0000 |
| 18:63985246:G:GG | donor_gain | 1.0000 |
| 18:63985247:TAAGC:T | donor_loss | 1.0000 |
AlphaMissense
2502 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 18:63983665:T:A | W171R | 0.995 |
| 18:63983665:T:C | W171R | 0.995 |
| 18:63983677:T:C | F175L | 0.993 |
| 18:63983679:T:A | F175L | 0.993 |
| 18:63983679:T:G | F175L | 0.993 |
| 18:63983667:G:C | W171C | 0.989 |
| 18:63983667:G:T | W171C | 0.989 |
| 18:63987210:T:C | F353L | 0.988 |
| 18:63987212:T:A | F353L | 0.988 |
| 18:63987212:T:G | F353L | 0.988 |
| 18:63983707:T:C | F185L | 0.984 |
| 18:63983709:T:A | F185L | 0.984 |
| 18:63983709:T:G | F185L | 0.984 |
| 18:63978408:A:C | S34R | 0.982 |
| 18:63978410:C:A | S34R | 0.982 |
| 18:63978410:C:G | S34R | 0.982 |
| 18:63983666:G:C | W171S | 0.979 |
| 18:63987027:T:C | F292L | 0.979 |
| 18:63987029:T:A | F292L | 0.979 |
| 18:63987029:T:G | F292L | 0.979 |
| 18:63987135:G:C | A328P | 0.979 |
| 18:63985172:T:C | L216P | 0.977 |
| 18:63978444:G:C | A46P | 0.976 |
| 18:63983708:T:C | F185S | 0.976 |
| 18:63985217:T:C | L231P | 0.976 |
| 18:63987192:T:C | F347L | 0.976 |
| 18:63987194:C:A | F347L | 0.976 |
| 18:63987194:C:G | F347L | 0.976 |
| 18:63979909:T:C | F93L | 0.975 |
| 18:63979911:T:A | F93L | 0.975 |
dbSNP variants (sampled 300 via entrez): RS1000006505 (18:63983258 G>A), RS1000052707 (18:63991132 A>G), RS1000081665 (18:64008008 A>C), RS1000103370 (18:63990870 A>G), RS1000178750 (18:64012810 G>A), RS1000190907 (18:64013048 A>C), RS1000193824 (18:64007831 C>A,T), RS1000230539 (18:63984493 G>A), RS1000281121 (18:63996276 T>C), RS1000324313 (18:64019077 T>C), RS1000341009 (18:63978236 A>G), RS1000375268 (18:64002041 A>G), RS1000401719 (18:64018780 C>T), RS1000605664 (18:63995395 C>G), RS1000642595 (18:63971848 C>A)
Disease associations
OMIM: gene MIM:601697 | disease phenotypes: MIM:617115
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| peeling skin syndrome 5 | Strong | Autosomal recessive |
| exfoliative ichthyosis | Supportive | Autosomal recessive |
Mondo (2): peeling skin syndrome 5 (MONDO:0014923), exfoliative ichthyosis (MONDO:0017339)
Orphanet (0):
HPO phenotypes
22 total (22 of 22 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000962 | Hyperkeratosis |
| HP:0000969 | Edema |
| HP:0001635 | Congestive heart failure |
| HP:0001644 | Dilated cardiomyopathy |
| HP:0001727 | Thromboembolic stroke |
| HP:0002875 | Exertional dyspnea |
| HP:0003198 | Myopathy |
| HP:0003457 | EMG abnormality |
| HP:0003593 | Infantile onset |
| HP:0003621 | Juvenile onset |
| HP:0004755 | Supraventricular tachycardia |
| HP:0011463 | Childhood onset |
| HP:0011675 | Arrhythmia |
| HP:0012378 | Fatigue |
| HP:0012666 | Severely reduced left ventricular ejection fraction |
| HP:0012764 | Orthopnea |
| HP:0025092 | Epidermal acanthosis |
| HP:0025169 | Left ventricular systolic dysfunction |
| HP:0040189 | Scaling skin |
| HP:0100578 | Lipoatrophy |
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001621_9 | Airflow obstruction | 7.000000e-07 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0003892 | pulmonary function measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5725085 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 1,538 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1232461 | MOLIBRESIB | 2 | 1,538 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
1 potent at pChembl≥5 of 1 total, top 1 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.00 | IC50 | 1e+04 | nM | MOLIBRESIB |
PubChem BioAssay actives
1 with measured affinity, of 6 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 2-[(4S)-6-(4-chlorophenyl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]-N-ethylacetamide | 2178935: Inhibition of SERPINB8 (unknown origin) incubated for 1 hr by colloidal coomassie staining based LC-MS/MS analysis | ic50 | 10.0000 | uM |
CTD chemical–gene interactions
81 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | increases expression, affects cotreatment, increases abundance | 4 |
| Benzo(a)pyrene | affects methylation, increases expression | 4 |
| Cadmium Chloride | increases abundance, increases expression | 4 |
| bisphenol A | affects expression, affects cotreatment, increases methylation, increases expression | 3 |
| Cisplatin | affects cotreatment, decreases expression, increases expression | 3 |
| Air Pollutants | increases expression, increases abundance | 2 |
| Arsenic | decreases expression, increases abundance, affects cotreatment, increases expression | 2 |
| Cadmium | increases expression, increases abundance | 2 |
| Tobacco Smoke Pollution | decreases expression, increases expression | 2 |
| Tretinoin | affects expression, decreases expression | 2 |
| Zinc | affects cotreatment, increases expression, decreases expression | 2 |
| Particulate Matter | increases abundance, increases expression, decreases expression | 2 |
| sotorasib | affects cotreatment, decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| propionaldehyde | increases expression | 1 |
| sodium arsenate | decreases expression, increases abundance | 1 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| beta-lapachone | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| manganese chloride | affects cotreatment, increases abundance, increases expression | 1 |
| 1-nitropyrene | increases expression | 1 |
| benazol P | affects expression | 1 |
| pentanal | increases expression | 1 |
| dinophysistoxin 1 | increases expression | 1 |
| tamibarotene | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| erucylphospho-N,N,N-trimethylpropylammonium | increases expression | 1 |
ChEMBL screening assays
6 unique, capped per target: 6 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5697665 | Binding | Inhibition of SERPINB8 (unknown origin) assessed as fold change at 10 uM incubated for 1 hr by colloidal coomassie staining based LC-MS/MS analysis | Inhibition of BET recruitment to chromatin as an effective treatment for MLL-fusion leukaemia. — Nature |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Associated diseases: peeling skin syndrome 5, exfoliative ichthyosis
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): exfoliative ichthyosis, peeling skin syndrome 5