SESTD1
gene geneOn this page
Also known as DKFZp434O0515Solo
Summary
SESTD1 (SEC14 and spectrin domain containing 1, HGNC:18379) is a protein-coding gene on chromosome 2q31.2, encoding SEC14 domain and spectrin repeat-containing protein 1 (Q86VW0). May act as the primary docking protein directing membrane turnover and assembly of the transient receptor potential channels TRPC4 and TRPC5.
Enables phosphatidylinositol-3,4-bisphosphate binding activity and phospholipid binding activity. Involved in negative regulation of calcium ion transmembrane transport via high voltage-gated calcium channel. Located in calcium channel complex and intermediate filament cytoskeleton.
Source: NCBI Gene 91404 — RefSeq curated summary.
At a glance
- GWAS associations: 6
- Clinical variants (ClinVar): 83 total
- MANE Select transcript:
NM_178123
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:18379 |
| Approved symbol | SESTD1 |
| Name | SEC14 and spectrin domain containing 1 |
| Location | 2q31.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DKFZp434O0515, Solo |
| Ensembl gene | ENSG00000187231 |
| Ensembl biotype | protein_coding |
| OMIM | 621011 |
| Entrez | 91404 |
Gene structure
Transcript identifiers
Ensembl transcripts: 23 — 17 protein_coding, 3 protein_coding_CDS_not_defined, 2 nonsense_mediated_decay, 1 retained_intron
ENST00000335289, ENST00000426988, ENST00000428443, ENST00000435047, ENST00000440010, ENST00000446758, ENST00000452991, ENST00000486468, ENST00000489901, ENST00000854635, ENST00000854636, ENST00000854637, ENST00000854638, ENST00000854639, ENST00000854640, ENST00000932265, ENST00000949561, ENST00000949562, ENST00000949563, ENST00000949564, ENST00000949565, ENST00000949566, ENST00000949567
RefSeq mRNA: 1 — MANE Select: NM_178123
NM_178123
CCDS: CCDS33338
Canonical transcript exons
ENST00000428443 — 18 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001340622 | 179123715 | 179123829 |
| ENSE00001340625 | 179124364 | 179124558 |
| ENSE00001340627 | 179132304 | 179132426 |
| ENSE00001340630 | 179146402 | 179146457 |
| ENSE00001340631 | 179149297 | 179149394 |
| ENSE00001340633 | 179151278 | 179151391 |
| ENSE00001836148 | 179101678 | 179110028 |
| ENSE00001892961 | 179264499 | 179264832 |
| ENSE00003463616 | 179115065 | 179115256 |
| ENSE00003480444 | 179116668 | 179116790 |
| ENSE00003568457 | 179117532 | 179117613 |
| ENSE00003598616 | 179191787 | 179191866 |
| ENSE00003629122 | 179176448 | 179176538 |
| ENSE00003636098 | 179112724 | 179112845 |
| ENSE00003637901 | 179143592 | 179143803 |
| ENSE00003640049 | 179172120 | 179172233 |
| ENSE00003661111 | 179183080 | 179183188 |
| ENSE00003661247 | 179121770 | 179121929 |
Expression profiles
Bgee: expression breadth ubiquitous, 255 present calls, max score 97.91.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 21.8033 / max 461.1191, expressed in 1757 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 32673 | 12.2221 | 1715 |
| 32669 | 7.4117 | 1638 |
| 32675 | 1.2693 | 139 |
| 32672 | 0.3607 | 157 |
| 32670 | 0.3576 | 148 |
| 32674 | 0.1095 | 40 |
| 32671 | 0.0725 | 11 |
Top tissues by expression
256 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| calcaneal tendon | UBERON:0003701 | 97.91 | gold quality |
| corpus callosum | UBERON:0002336 | 97.32 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 97.14 | gold quality |
| mucosa of stomach | UBERON:0001199 | 96.74 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 96.50 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 96.42 | gold quality |
| cartilage tissue | UBERON:0002418 | 96.23 | gold quality |
| kidney epithelium | UBERON:0004819 | 95.95 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 95.92 | gold quality |
| secondary oocyte | CL:0000655 | 95.80 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 95.76 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 95.32 | gold quality |
| tendon | UBERON:0000043 | 95.18 | gold quality |
| pancreatic ductal cell | CL:0002079 | 95.11 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 95.02 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 94.99 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 94.94 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 94.94 | gold quality |
| popliteal artery | UBERON:0002250 | 94.85 | gold quality |
| spinal cord | UBERON:0002240 | 94.84 | gold quality |
| tibial artery | UBERON:0007610 | 94.83 | gold quality |
| globus pallidus | UBERON:0001875 | 94.80 | gold quality |
| sural nerve | UBERON:0015488 | 94.75 | gold quality |
| medial globus pallidus | UBERON:0002477 | 94.74 | gold quality |
| islet of Langerhans | UBERON:0000006 | 94.71 | gold quality |
| aorta | UBERON:0000947 | 94.65 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 94.57 | gold quality |
| saphenous vein | UBERON:0007318 | 94.49 | gold quality |
| adipose tissue | UBERON:0001013 | 94.45 | gold quality |
| thoracic aorta | UBERON:0001515 | 94.40 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 17.17 |
| E-GEOD-137537 | yes | 5.31 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
394 targeting SESTD1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-29A-3P | 100.00 | 73.11 | 1835 |
| HSA-MIR-29B-3P | 100.00 | 73.18 | 1833 |
| HSA-MIR-29C-3P | 100.00 | 73.15 | 1833 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-3185 | 99.99 | 68.12 | 1959 |
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-433-3P | 99.98 | 69.37 | 1203 |
| HSA-LET-7A-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7B-5P | 99.98 | 72.31 | 1790 |
| HSA-LET-7C-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7E-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7F-5P | 99.98 | 72.56 | 1784 |
| HSA-LET-7G-5P | 99.98 | 72.37 | 1784 |
| HSA-LET-7I-5P | 99.98 | 72.37 | 1788 |
| HSA-MIR-98-5P | 99.98 | 72.33 | 1787 |
| HSA-MIR-568 | 99.98 | 69.86 | 2084 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
Literature-anchored findings (GeneRIF, showing 4)
- SESTD1 was found to associate with TRPC4 and TRPC5 via the channel’s calmodulin- and inositol 1,4,5-trisphosphate receptor-binding domain. (PMID:20164195)
- Upregulation of miR-532-5p and subsequent suppression of the SESTD1 and TAB3 genes represent an antiviral response aimed at limiting West Nile virus infection. (PMID:26676784)
- The interplay between Solo protein and keratin 8/keratin 18 filaments plays a crucial role in tensile force-induced RhoA activation and consequent actin cytoskeletal reinforcement in endothelial cells. (PMID:26823019)
- Solo plays a crucial role in HD formation and acinar development in epithelial cells by regulating mechanical force-induced RhoA activation and keratin filament organization. (PMID:29672603)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | sestd1 | ENSDARG00000040614 |
| mus_musculus | Sestd1 | ENSMUSG00000042272 |
| rattus_norvegicus | Sestd1 | ENSRNOG00000012603 |
Paralogs (22): TRIO (ENSG00000038382), MCF2L2 (ENSG00000053524), PLEKHG2 (ENSG00000090924), MCF2 (ENSG00000101977), ARHGEF7 (ENSG00000102606), PLEKHG1 (ENSG00000120278), MCF2L (ENSG00000126217), ARHGEF6 (ENSG00000129675), ARHGEF9 (ENSG00000131089), VAV3 (ENSG00000134215), VAV1 (ENSG00000141968), TIAM2 (ENSG00000146426), KIAA1755 (ENSG00000149633), PLEKHG4B (ENSG00000153404), TIAM1 (ENSG00000156299), KALRN (ENSG00000160145), VAV2 (ENSG00000160293), ARHGEF40 (ENSG00000165801), SPATA13 (ENSG00000182957), PLEKHN1 (ENSG00000187583), PLEKHG4 (ENSG00000196155), ARHGEF25 (ENSG00000240771)
Protein
Protein identifiers
SEC14 domain and spectrin repeat-containing protein 1 — Q86VW0 (reviewed: Q86VW0)
Alternative names: Huntingtin-interacting protein-like protein, Protein Solo
All UniProt accessions (5): C9J4X8, C9JHW6, Q86VW0, H0Y774, H7BXT9
UniProt curated annotations — full annotation on UniProt →
Function. May act as the primary docking protein directing membrane turnover and assembly of the transient receptor potential channels TRPC4 and TRPC5. Binds phospholipids such as phosphatidylinositol monophosphates, phosphatidylinositol diphosphates (PIP2s) and phosphatidic acid, but not less polar lipids including phosphatidylcholine, phosphatidylserine, and phosphatidylinositol. The binding to PIP2s is calcium dependent. Might be involved in the plasma membrane localization of CTNNB1.
Subunit / interactions. Interacts (via the spectrin 1 repeat) with TRPC4 and TRPC5 (via CIRB domain). Interacts with CTNNB1.
Tissue specificity. Broad expression. High expression in thalamus and brain. Significantly expressed in vasculature.
Miscellaneous. Called SOLO because the encoded protein is related to but shorter than DUO and TRIO.
Similarity. Belongs to the SOLO family.
RefSeq proteins (1): NP_835224* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001251 | CRAL-TRIO_dom | Domain |
| IPR056804 | Spectrin_SESTD1 | Domain |
Pfam: PF13716, PF24915
UniProt features (8 total): repeat 3, sequence variant 2, chain 1, domain 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q86VW0-F1 | 86.06 | 0.58 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 285 (showing top):
GSE45365_HEALTHY_VS_MCMV_INFECTION_CD8_TCELL_IFNAR_KO_UP, GSE45365_CTRL_VS_MCMV_INFECTION_NK_CELL_DN, TGGTGCT_MIR29A_MIR29B_MIR29C, GOBP_NEGATIVE_REGULATION_OF_TRANSMEMBRANE_TRANSPORT, TTTGTAG_MIR520D, GOBP_MONOATOMIC_CATION_TRANSPORT, PATIL_LIVER_CANCER, GTGCCTT_MIR506, GGGCATT_MIR365, GOBP_NEGATIVE_REGULATION_OF_TRANSPORT, CATTTCA_MIR203, FREAC3_01, GOBP_REGULATION_OF_CALCIUM_ION_TRANSMEMBRANE_TRANSPORT, LIAO_METASTASIS, GOBP_NEGATIVE_REGULATION_OF_CALCIUM_ION_TRANSPORT
GO Biological Process (1): negative regulation of calcium ion transmembrane transport via high voltage-gated calcium channel (GO:1904878)
GO Molecular Function (8): phosphatidylinositol-4,5-bisphosphate binding (GO:0005546), phosphatidylinositol-5-phosphate binding (GO:0010314), phosphatidylinositol-3-phosphate binding (GO:0032266), phosphatidylinositol-3,4-bisphosphate binding (GO:0043325), phosphatidylinositol-4-phosphate binding (GO:0070273), phosphatidic acid binding (GO:0070300), phosphatidylinositol-3,5-bisphosphate binding (GO:0080025), protein binding (GO:0005515)
GO Cellular Component (2): intermediate filament cytoskeleton (GO:0045111), calcium channel complex (GO:0034704)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| phosphatidylinositol phosphate binding | 5 |
| phosphatidylinositol bisphosphate binding | 3 |
| anion binding | 3 |
| calcium ion transmembrane transport via high voltage-gated calcium channel | 1 |
| regulation of calcium ion transmembrane transport via high voltage-gated calcium channel | 1 |
| negative regulation of calcium ion transmembrane transport | 1 |
| phospholipid binding | 1 |
| binding | 1 |
| cytoskeleton | 1 |
| cation channel complex | 1 |
Protein interactions and networks
STRING
600 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SESTD1 | TRPC5 | Q9UL62 | 816 |
| SESTD1 | TRPC4 | Q9UBN4 | 805 |
| SESTD1 | TAB3 | Q8N5C8 | 544 |
| SESTD1 | SMC3 | Q9UQE7 | 507 |
| SESTD1 | PLEK | P08567 | 502 |
| SESTD1 | PLEK2 | Q9NYT0 | 497 |
| SESTD1 | BRCA1 | P38398 | 479 |
| SESTD1 | PARP1 | P09874 | 476 |
| SESTD1 | CALML6 | Q8TD86 | 455 |
| SESTD1 | CALML3 | P27482 | 455 |
| SESTD1 | CALML5 | Q9NZT1 | 455 |
| SESTD1 | CALML4 | Q96GE6 | 455 |
| SESTD1 | CALM1 | P02593 | 454 |
| SESTD1 | A0A2R8Y809 | A0A2R8Y809 | 446 |
| SESTD1 | TBCE | Q15813 | 446 |
IntAct
82 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| GPS2 | SESTD1 | psi-mi:“MI:0915”(physical association) | 0.780 |
| SESTD1 | GPS2 | psi-mi:“MI:0915”(physical association) | 0.780 |
| SESTD1 | STMN2 | psi-mi:“MI:0915”(physical association) | 0.670 |
| FAM9C | NDC80 | psi-mi:“MI:0914”(association) | 0.670 |
| P4HA3 | FAM171A2 | psi-mi:“MI:0914”(association) | 0.640 |
| IRAK2 | SESTD1 | psi-mi:“MI:0914”(association) | 0.640 |
| SESTD1 | STMN1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| STMN1 | SESTD1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SESTD1 | RABGEF1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| IQCB1 | SESTD1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DACT3 | SESTD1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SESTD1 | ZNF830 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SESTD1 | HSF4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TEAD4 | SESTD1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SESTD1 | CBX8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZNF669 | LRP4 | psi-mi:“MI:0914”(association) | 0.530 |
| YWHAZ | BLTP3B | psi-mi:“MI:0914”(association) | 0.530 |
| HSF4 | HSF1 | psi-mi:“MI:0914”(association) | 0.530 |
| ARL11 | SESTD1 | psi-mi:“MI:0914”(association) | 0.530 |
| STMN2 | MTA2 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (56): SESTD1 (Two-hybrid), SESTD1 (Two-hybrid), SESTD1 (Affinity Capture-MS), SESTD1 (Affinity Capture-MS), SESTD1 (Affinity Capture-MS), SESTD1 (Affinity Capture-MS), SESTD1 (Affinity Capture-MS), SESTD1 (Affinity Capture-MS), SESTD1 (Affinity Capture-MS), SESTD1 (Affinity Capture-MS), SESTD1 (Affinity Capture-MS), SESTD1 (Affinity Capture-MS), SESTD1 (Affinity Capture-MS), SESTD1 (Affinity Capture-MS), SESTD1 (Affinity Capture-MS)
ESM2 similar proteins: A2AGL3, B0LPN4, E9PZQ0, E9Q401, F1LMY4, F1Q8X5, P0C7A6, P11716, P11881, P16960, P21817, P29994, P29995, P30957, P42694, P48553, Q0VEJ0, Q14571, Q14643, Q15413, Q1LVW0, Q24498, Q28C34, Q3TLI0, Q5F361, Q5RCP7, Q6NRC7, Q6NRD0, Q6NYU2, Q6QI06, Q6R327, Q7SXV1, Q7Z3V4, Q7ZUV0, Q7ZYD9, Q80UK0, Q86VW0, Q8BHL5, Q8BIK4, Q8BWW9
Diamond homologs: A2CG49, A8DYP0, F1M0Z1, O15068, O60229, O75962, P10911, P97924, Q0KL02, Q13009, Q14155, Q1LUA6, Q58EX7, Q5M7P4, Q60610, Q63406, Q64096, Q6GNM9, Q6GPX2, Q6KAU7, Q6P720, Q6XZF7, Q6ZPF3, Q7SX85, Q80U35, Q80UK0, Q86VW0, Q86VW2, Q86YR7, Q8IVF5, Q96PE2, Q96PX9, Q9CWR0, Q9H7P9
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
83 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 59 |
| Likely benign | 1 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
4039 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:179112718:CCATA:C | donor_loss | 1.0000 |
| 2:179112719:CATAC:C | donor_loss | 1.0000 |
| 2:179112721:TACCC:T | donor_loss | 1.0000 |
| 2:179112722:A:T | donor_loss | 1.0000 |
| 2:179112722:AC:A | donor_gain | 1.0000 |
| 2:179112723:CC:C | donor_gain | 1.0000 |
| 2:179112723:CCCAT:C | donor_gain | 1.0000 |
| 2:179112727:T:C | donor_gain | 1.0000 |
| 2:179112737:C:CT | donor_gain | 1.0000 |
| 2:179112738:T:TT | donor_gain | 1.0000 |
| 2:179112739:A:AC | donor_gain | 1.0000 |
| 2:179112740:C:CC | donor_gain | 1.0000 |
| 2:179112775:A:C | donor_gain | 1.0000 |
| 2:179112842:AAAT:A | acceptor_gain | 1.0000 |
| 2:179112844:AT:A | acceptor_gain | 1.0000 |
| 2:179112846:C:CA | acceptor_loss | 1.0000 |
| 2:179112846:C:CC | acceptor_gain | 1.0000 |
| 2:179112847:T:G | acceptor_loss | 1.0000 |
| 2:179115147:A:AC | donor_gain | 1.0000 |
| 2:179115148:C:CC | donor_gain | 1.0000 |
| 2:179115148:CT:C | donor_gain | 1.0000 |
| 2:179116712:T:A | donor_gain | 1.0000 |
| 2:179116787:CTGC:C | acceptor_gain | 1.0000 |
| 2:179117526:CCTTA:C | donor_loss | 1.0000 |
| 2:179117527:CTTAC:C | donor_loss | 1.0000 |
| 2:179117528:TTAC:T | donor_loss | 1.0000 |
| 2:179117529:TA:T | donor_loss | 1.0000 |
| 2:179117531:C:CG | donor_loss | 1.0000 |
| 2:179117609:CACAT:C | acceptor_gain | 1.0000 |
| 2:179117611:CAT:C | acceptor_gain | 1.0000 |
AlphaMissense
4582 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:179115156:A:G | L583P | 1.000 |
| 2:179115240:C:T | G555D | 1.000 |
| 2:179115241:C:G | G555R | 1.000 |
| 2:179116768:A:G | L516P | 1.000 |
| 2:179116777:A:G | L513P | 1.000 |
| 2:179116779:C:A | W512C | 1.000 |
| 2:179116779:C:G | W512C | 1.000 |
| 2:179116781:A:G | W512R | 1.000 |
| 2:179116781:A:T | W512R | 1.000 |
| 2:179124422:A:G | L370P | 1.000 |
| 2:179124455:A:G | L359P | 1.000 |
| 2:179124533:A:G | L333P | 1.000 |
| 2:179143680:A:G | L254P | 1.000 |
| 2:179143803:C:T | G213E | 1.000 |
| 2:179146402:C:A | G213W | 1.000 |
| 2:179146402:C:G | G213R | 1.000 |
| 2:179146402:C:T | G213R | 1.000 |
| 2:179149348:A:G | L177P | 1.000 |
| 2:179149380:A:C | F166L | 1.000 |
| 2:179149380:A:T | F166L | 1.000 |
| 2:179149381:A:G | F166S | 1.000 |
| 2:179149382:A:G | F166L | 1.000 |
| 2:179151293:C:A | W156C | 1.000 |
| 2:179151293:C:G | W156C | 1.000 |
| 2:179151295:A:G | W156R | 1.000 |
| 2:179151295:A:T | W156R | 1.000 |
| 2:179151321:C:T | G147E | 1.000 |
| 2:179151339:A:G | L141S | 1.000 |
| 2:179151366:A:C | L132W | 1.000 |
| 2:179151366:A:G | L132S | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000016803 (2:179130259 T>C), RS1000029501 (2:179185389 T>C), RS1000033542 (2:179219177 C>T), RS1000092106 (2:179163967 A>G), RS1000107596 (2:179184043 A>G), RS1000125204 (2:179123489 A>G), RS1000141624 (2:179184877 G>A), RS1000154018 (2:179130318 A>C,G), RS1000187913 (2:179147715 C>A), RS1000215131 (2:179200598 A>C,G), RS1000216833 (2:179226451 T>A,C), RS1000297574 (2:179225180 G>A), RS1000323090 (2:179225933 G>A), RS1000324970 (2:179157751 AATTT>A), RS1000337163 (2:179151891 A>G)
Disease associations
OMIM: gene MIM:621011 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
6 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001872_11 | Presence of antiphospholipid antibodies | 6.000000e-06 |
| GCST003159_2 | Objective response to lithium treatment | 3.000000e-08 |
| GCST003815_19 | Late-onset Alzheimer’s disease | 2.000000e-06 |
| GCST005557_6 | Serum uric acid levels | 6.000000e-07 |
| GCST009462_39 | Optic disc size | 6.000000e-09 |
| GCST010002_405 | Refractive error | 1.000000e-70 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:1001870 | late-onset Alzheimers disease |
| EFO:0004761 | uric acid measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
39 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | decreases expression | 3 |
| Cyclosporine | decreases expression | 3 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 3 |
| entinostat | decreases expression, affects cotreatment | 2 |
| Panobinostat | affects cotreatment, decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| GSK-J4 | increases expression | 1 |
| TAK-243 | increases sumoylation | 1 |
| methylmercuric chloride | decreases expression | 1 |
| pirinixic acid | affects binding, decreases expression, increases activity | 1 |
| trichostatin A | affects cotreatment, decreases expression | 1 |
| sodium arsenite | increases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| nickel sulfate | increases expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| pentanal | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| K 7174 | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Cadmium | increases abundance, increases expression | 1 |
| Demecolcine | decreases expression | 1 |
| Ketoconazole | increases expression | 1 |
| Methapyrilene | increases methylation | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.