SF1-DT

Summary

SF1-DT (SF1 divergent transcript, HGNC:55278) is a long non-coding RNA gene on chromosome 11q13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55278
Approved symbol	SF1-DT
Name	SF1 divergent transcript
Location	11q13.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000269038
Ensembl biotype	lncRNA
Entrez	118827805
RNAcentral	URS0002A4C70A — lncRNA, 479 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000594089

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000594089 — 2 exons

Exon	Start	End
ENSE00004215851	64778947	64779405
ENSE00004215852	64778085	64778104

Expression profiles

Bgee: expression breadth ubiquitous, 168 present calls, max score 85.19.

Top tissues by expression

242 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.19	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	81.16	gold quality
left testis	UBERON:0004533	73.35	gold quality
ventricular zone	UBERON:0003053	72.92	gold quality
sural nerve	UBERON:0015488	72.72	gold quality
right testis	UBERON:0004534	72.42	gold quality
testis	UBERON:0000473	72.25	gold quality
cortical plate	UBERON:0005343	70.54	gold quality
hindlimb stylopod muscle	UBERON:0004252	70.24	gold quality
ganglionic eminence	UBERON:0004023	68.84	gold quality
bone marrow cell	CL:0002092	68.36	silver quality
cerebellar hemisphere	UBERON:0002245	68.20	gold quality
cerebellar cortex	UBERON:0002129	68.13	gold quality
buccal mucosa cell	CL:0002336	67.66	gold quality
right hemisphere of cerebellum	UBERON:0014890	67.58	gold quality
muscle of leg	UBERON:0001383	67.57	gold quality
gastrocnemius	UBERON:0001388	67.52	gold quality
cerebellum	UBERON:0002037	67.50	gold quality
monocyte	CL:0000576	67.12	gold quality
leukocyte	CL:0000738	66.54	gold quality
colonic epithelium	UBERON:0000397	66.30	silver quality
adenohypophysis	UBERON:0002196	66.08	gold quality
pituitary gland	UBERON:0000007	65.73	gold quality
left lobe of thyroid gland	UBERON:0001120	65.08	gold quality
right lobe of thyroid gland	UBERON:0001119	64.99	gold quality
thyroid gland	UBERON:0002046	64.78	gold quality
calcaneal tendon	UBERON:0003701	64.71	gold quality
Brodmann (1909) area 9	UBERON:0013540	63.97	gold quality
lower esophagus mucosa	UBERON:0035834	63.74	gold quality
tibial nerve	UBERON:0001323	63.34	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.36

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.