SFSPAT

Summary

SFSPAT (SF1 splicing associated transcript, HGNC:58768) is a long non-coding RNA gene on chromosome 12q24.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58768
Approved symbol	SFSPAT
Name	SF1 splicing associated transcript
Location	12q24.33
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-46H11.3, SPAT
Ensembl gene	ENSG00000250790
Ensembl biotype	lncRNA
Entrez	124903065

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000503695

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000503695 — 1 exons

Exon	Start	End
ENSE00002081172	132911470	132914732

Expression profiles

Bgee: expression breadth ubiquitous, 124 present calls, max score 68.07.

Top tissues by expression

124 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right uterine tube	UBERON:0001302	68.07	gold quality
cortical plate	UBERON:0005343	66.23	gold quality
islet of Langerhans	UBERON:0000006	64.31	gold quality
colonic epithelium	UBERON:0000397	62.79	silver quality
ventricular zone	UBERON:0003053	60.75	gold quality
endometrium	UBERON:0001295	60.63	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	60.09	gold quality
ganglionic eminence	UBERON:0004023	59.77	gold quality
superior frontal gyrus	UBERON:0002661	59.64	gold quality
stromal cell of endometrium	CL:0002255	59.06	gold quality
fallopian tube	UBERON:0003889	58.57	gold quality
pituitary gland	UBERON:0000007	58.43	gold quality
anterior cingulate cortex	UBERON:0009835	57.92	gold quality
nucleus accumbens	UBERON:0001882	57.82	gold quality
adenohypophysis	UBERON:0002196	57.63	gold quality
caudate nucleus	UBERON:0001873	57.62	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	57.61	gold quality
Brodmann (1909) area 9	UBERON:0013540	57.17	gold quality
primary visual cortex	UBERON:0002436	56.87	gold quality
hypothalamus	UBERON:0001898	56.80	gold quality
amygdala	UBERON:0001876	56.73	gold quality
cerebral cortex	UBERON:0000956	56.41	gold quality
Ammon’s horn	UBERON:0001954	55.94	gold quality
smooth muscle tissue	UBERON:0001135	55.58	gold quality
leukocyte	CL:0000738	55.47	silver quality
right coronary artery	UBERON:0001625	55.39	gold quality
brain	UBERON:0000955	55.24	gold quality
putamen	UBERON:0001874	55.06	gold quality
myometrium	UBERON:0001296	55.00	gold quality
frontal cortex	UBERON:0001870	54.46	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.54

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.