SGSM3-AS1

Summary

SGSM3-AS1 (SGSM3 antisense RNA 1, HGNC:41088) is a long non-coding RNA gene on chromosome 22q13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41088
Approved symbol	SGSM3-AS1
Name	SGSM3 antisense RNA 1
Location	22q13.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229999
Ensembl biotype	lncRNA
Entrez	107985538
RNAcentral	URS0000558F13 — lncRNA, 658 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000414261, ENST00000607915, ENST00000608572

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414261 — 2 exons

Exon	Start	End
ENSE00001756341	40372664	40372949
ENSE00001805494	40388145	40388290

Expression profiles

Bgee: expression breadth ubiquitous, 126 present calls, max score 85.15.

Top tissues by expression

126 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.15	gold quality
adrenal tissue	UBERON:0018303	70.42	gold quality
skeletal muscle tissue	UBERON:0001134	69.52	gold quality
bone marrow cell	CL:0002092	68.32	silver quality
bone marrow	UBERON:0002371	65.81	gold quality
ganglionic eminence	UBERON:0004023	65.53	gold quality
tonsil	UBERON:0002372	65.23	gold quality
corpus callosum	UBERON:0002336	64.36	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	61.69	gold quality
monocyte	CL:0000576	61.10	gold quality
lymph node	UBERON:0000029	60.24	gold quality
blood	UBERON:0000178	58.50	gold quality
kidney	UBERON:0002113	57.80	gold quality
muscle of leg	UBERON:0001383	57.53	gold quality
gastrocnemius	UBERON:0001388	56.90	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	56.89	gold quality
liver	UBERON:0002107	56.74	gold quality
stromal cell of endometrium	CL:0002255	55.75	gold quality
hindlimb stylopod muscle	UBERON:0004252	55.56	gold quality
calcaneal tendon	UBERON:0003701	55.27	gold quality
gall bladder	UBERON:0002110	55.12	gold quality
pancreas	UBERON:0001264	54.95	gold quality
body of pancreas	UBERON:0001150	54.42	gold quality
endometrium	UBERON:0001295	54.39	gold quality
islet of Langerhans	UBERON:0000006	53.58	gold quality
stomach	UBERON:0000945	52.82	gold quality
placenta	UBERON:0001987	52.71	gold quality
prefrontal cortex	UBERON:0000451	52.39	gold quality
mucosa of transverse colon	UBERON:0004991	52.37	gold quality
adrenal gland	UBERON:0002369	51.97	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.08

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.