SIDT1
gene geneOn this page
Also known as FLJ20174SID-1
Summary
SIDT1 (SID1 transmembrane family member 1, HGNC:25967) is a protein-coding gene on chromosome 3q13.2, encoding SID1 transmembrane family member 1 (Q9NXL6). In vitro binds long double-stranded RNA (dsRNA) (500 and 700 base pairs), but not dsRNA shorter than 300 bp.
The protein encoded by this gene belongs to SID1 family of transmembrane dsRNA-gated channels. Family members transport dsRNA into cells and are required for systemic RNA interference.
Source: NCBI Gene 54847 — RefSeq curated summary.
At a glance
- GWAS associations: 6
- Clinical variants (ClinVar): 136 total
- MANE Select transcript:
NM_017699
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25967 |
| Approved symbol | SIDT1 |
| Name | SID1 transmembrane family member 1 |
| Location | 3q13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ20174, SID-1 |
| Ensembl gene | ENSG00000072858 |
| Ensembl biotype | protein_coding |
| OMIM | 606816 |
| Entrez | 54847 |
Gene structure
Transcript identifiers
Ensembl transcripts: 22 — 12 protein_coding, 9 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000264852, ENST00000393830, ENST00000463226, ENST00000465803, ENST00000468728, ENST00000480746, ENST00000481891, ENST00000483946, ENST00000488390, ENST00000491730, ENST00000492863, ENST00000498152, ENST00000876685, ENST00000876686, ENST00000876687, ENST00000876689, ENST00000876691, ENST00000876692, ENST00000876693, ENST00000876694, ENST00000876695, ENST00000950250
RefSeq mRNA: 9 — MANE Select: NM_017699
NM_001308350, NM_001322294, NM_001322295, NM_001322296, NM_001322297, NM_001322298, NM_001322299, NM_001322300, NM_017699
CCDS: CCDS2974, CCDS77790
Canonical transcript exons
ENST00000264852 — 25 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000775478 | 113581361 | 113581444 |
| ENSE00000775479 | 113583409 | 113583496 |
| ENSE00000775480 | 113584698 | 113584769 |
| ENSE00000823539 | 113616100 | 113616176 |
| ENSE00001642093 | 113607041 | 113607114 |
| ENSE00001852811 | 113627646 | 113629575 |
| ENSE00001862415 | 113532555 | 113533243 |
| ENSE00003464252 | 113623623 | 113623733 |
| ENSE00003465033 | 113619680 | 113619726 |
| ENSE00003501182 | 113567540 | 113567710 |
| ENSE00003501258 | 113608419 | 113608536 |
| ENSE00003502094 | 113566420 | 113566541 |
| ENSE00003514364 | 113593005 | 113593048 |
| ENSE00003519735 | 113626102 | 113626215 |
| ENSE00003538436 | 113608094 | 113608217 |
| ENSE00003570233 | 113580608 | 113580709 |
| ENSE00003580797 | 113623427 | 113623532 |
| ENSE00003581777 | 113601588 | 113601659 |
| ENSE00003619963 | 113612086 | 113612194 |
| ENSE00003621539 | 113603960 | 113604033 |
| ENSE00003636693 | 113604910 | 113604976 |
| ENSE00003650257 | 113611008 | 113611144 |
| ENSE00003668443 | 113576922 | 113576967 |
| ENSE00003675701 | 113585177 | 113585270 |
| ENSE00003691310 | 113603005 | 113603150 |
Expression profiles
Bgee: expression breadth ubiquitous, 234 present calls, max score 87.83.
FANTOM5 (CAGE): breadth broad, TPM avg 5.7473 / max 147.9307, expressed in 489 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 37963 | 3.8806 | 413 |
| 37964 | 0.8849 | 295 |
| 37968 | 0.3416 | 69 |
| 37965 | 0.2012 | 141 |
| 37966 | 0.1743 | 97 |
| 37962 | 0.1449 | 102 |
| 37967 | 0.1199 | 45 |
Top tissues by expression
281 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right hemisphere of cerebellum | UBERON:0014890 | 87.83 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 87.70 | gold quality |
| cerebellar cortex | UBERON:0002129 | 87.68 | gold quality |
| rectum | UBERON:0001052 | 87.07 | gold quality |
| cerebellum | UBERON:0002037 | 86.81 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 85.91 | gold quality |
| granulocyte | CL:0000094 | 84.92 | gold quality |
| right frontal lobe | UBERON:0002810 | 83.95 | gold quality |
| colonic mucosa | UBERON:0000317 | 83.92 | gold quality |
| tonsil | UBERON:0002372 | 83.68 | gold quality |
| lymph node | UBERON:0000029 | 81.92 | gold quality |
| spleen | UBERON:0002106 | 81.59 | gold quality |
| gall bladder | UBERON:0002110 | 81.11 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 80.91 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 80.57 | gold quality |
| frontal cortex | UBERON:0001870 | 80.26 | gold quality |
| bronchial epithelial cell | CL:0002328 | 80.23 | gold quality |
| prefrontal cortex | UBERON:0000451 | 79.74 | gold quality |
| blood | UBERON:0000178 | 79.52 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 79.43 | gold quality |
| neocortex | UBERON:0001950 | 79.32 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 79.32 | gold quality |
| cingulate cortex | UBERON:0003027 | 79.31 | gold quality |
| bone marrow cell | CL:0002092 | 78.31 | gold quality |
| leukocyte | CL:0000738 | 78.15 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 78.15 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 78.13 | gold quality |
| cerebellar vermis | UBERON:0004720 | 78.03 | silver quality |
| cerebral cortex | UBERON:0000956 | 78.01 | gold quality |
| pituitary gland | UBERON:0000007 | 77.90 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 10.81 |
| E-MTAB-6386 | no | 371.66 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): STAT6
miRNA regulators (miRDB)
106 targeting SIDT1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4673 | 100.00 | 66.64 | 1490 |
| HSA-MIR-4425 | 100.00 | 67.59 | 1049 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-29A-3P | 100.00 | 73.11 | 1835 |
| HSA-MIR-29B-3P | 100.00 | 73.18 | 1833 |
| HSA-MIR-29C-3P | 100.00 | 73.15 | 1833 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-513B-5P | 99.99 | 69.96 | 2150 |
| HSA-MIR-4645-5P | 99.98 | 65.81 | 1284 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
| HSA-MIR-497-5P | 99.92 | 71.83 | 2674 |
| HSA-MIR-6809-3P | 99.91 | 71.45 | 3814 |
| HSA-MIR-15A-5P | 99.90 | 72.80 | 2787 |
| HSA-MIR-15B-5P | 99.90 | 72.78 | 2798 |
| HSA-MIR-16-5P | 99.90 | 72.80 | 2780 |
| HSA-MIR-195-5P | 99.90 | 72.81 | 2805 |
| HSA-MIR-424-5P | 99.89 | 71.90 | 2641 |
| HSA-MIR-6838-5P | 99.89 | 71.94 | 2690 |
| HSA-MIR-6780A-5P | 99.88 | 66.69 | 2776 |
| HSA-MIR-3065-3P | 99.87 | 70.25 | 1407 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-205-5P | 99.81 | 70.05 | 1557 |
Literature-anchored findings (GeneRIF, showing 7)
- SIDT1, facilitates rapid, contact-dependent, bidirectional small RNA transfer between human cells, resulting in target-specific non-cell-autonomous RNAi (PMID:22174421)
- characterization of Sid-1 extracellular domain (PMID:22509261)
- In silico analysis identified SIDT1 and SIDT2 sharing identity and conserved cholesterol binding (CRAC) domains with C. elegans ChUP-1. Further evidence indicate that SIDT1 and SIDT2 not only do not transport RNA, but they are involved in cholesterol transport. Single point mutations in the CRAC domains of both proteins prevent FRET between SIDT1, SIDT2 and dehydroergosterol and alter cholesterol transport. (PMID:28785058)
- Human SIDT1 mediates dsRNA uptake via its phospholipase activity. (PMID:37932444)
- Characterization of N-glycosylation and its functional role in SIDT1-Mediated RNA uptake. (PMID:38237680)
- Cryo-EM analysis reveals human SID-1 transmembrane family member 1 dynamics underlying lipid hydrolytic activity. (PMID:38811802)
- Structure of the human systemic RNAi defective transmembrane protein 1 (hSIDT1) reveals the conformational flexibility of its lipid binding domain. (PMID:38925866)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Sidt1 | ENSMUSG00000022696 |
| rattus_norvegicus | Sidt1 | ENSRNOG00000002013 |
| caenorhabditis_elegans | WBGENE00006477 |
Paralogs (1): SIDT2 (ENSG00000149577)
Protein
Protein identifiers
SID1 transmembrane family member 1 — Q9NXL6 (reviewed: Q9NXL6)
All UniProt accessions (1): Q9NXL6
UniProt curated annotations — full annotation on UniProt →
Function. In vitro binds long double-stranded RNA (dsRNA) (500 and 700 base pairs), but not dsRNA shorter than 300 bp. Not involved in RNA autophagy, a process in which RNA is directly imported into lysosomes in an ATP-dependent manner, and degraded.
Subcellular location. Membrane.
Similarity. Belongs to the SID1 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9NXL6-1 | 1 | yes |
| Q9NXL6-2 | 2 |
RefSeq proteins (9): NP_001295279, NP_001309223, NP_001309224, NP_001309225, NP_001309226, NP_001309227, NP_001309228, NP_001309229, NP_060169* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR025958 | SID1_TM_fam | Family |
Pfam: PF13965
UniProt features (103 total): strand 29, helix 22, topological domain 12, transmembrane region 11, turn 10, glycosylation site 8, compositionally biased region 3, sequence variant 3, signal peptide 1, chain 1, region of interest 1, splice variant 1, sequence conflict 1
Structure
Experimental structures (PDB)
14 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8JUN | ELECTRON MICROSCOPY | 2.38 |
| 8WOR | ELECTRON MICROSCOPY | 2.66 |
| 8J6M | ELECTRON MICROSCOPY | 2.77 |
| 8KCW | ELECTRON MICROSCOPY | 2.77 |
| 8WOQ | ELECTRON MICROSCOPY | 2.85 |
| 8JUL | ELECTRON MICROSCOPY | 2.92 |
| 8KCX | ELECTRON MICROSCOPY | 2.96 |
| 8WOT | ELECTRON MICROSCOPY | 3.18 |
| 8K13 | ELECTRON MICROSCOPY | 3.33 |
| 8WOS | ELECTRON MICROSCOPY | 3.37 |
| 8K1B | ELECTRON MICROSCOPY | 3.47 |
| 8V38 | ELECTRON MICROSCOPY | 3.5 |
| 8K1D | ELECTRON MICROSCOPY | 3.53 |
| 9M8U | ELECTRON MICROSCOPY | 3.79 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9NXL6-F1 | 80.90 | 0.51 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Glycosylation sites (8): 57, 67, 83, 136, 282, 471, 567, 764
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 0 (showing top):
GO Biological Process (1): RNA transport (GO:0050658)
GO Molecular Function (4): double-stranded RNA binding (GO:0003725), cholesterol binding (GO:0015485), RNA transmembrane transporter activity (GO:0051033), RNA binding (GO:0003723)
GO Cellular Component (3): lysosome (GO:0005764), plasma membrane (GO:0005886), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| nucleic acid transport | 1 |
| establishment of RNA localization | 1 |
| RNA binding | 1 |
| sterol binding | 1 |
| alcohol binding | 1 |
| RNA transport | 1 |
| nucleic acid transmembrane transporter activity | 1 |
| nucleic acid binding | 1 |
| lytic vacuole | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1644 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SIDT1 | UNC119 | Q13432 | 780 |
| SIDT1 | DICER1 | Q9UPY3 | 706 |
| SIDT1 | IGDCC3 | Q8IVU1 | 694 |
| SIDT1 | CDC14A | Q9UNH5 | 674 |
| SIDT1 | ERI1 | Q8IV48 | 631 |
| SIDT1 | LATS1 | O95835 | 522 |
| SIDT1 | MORF4L1 | Q9UBU8 | 485 |
| SIDT1 | AGO1 | Q9UL18 | 476 |
| SIDT1 | ZC3H12D | A2A288 | 475 |
| SIDT1 | PIWIL1 | Q96J94 | 461 |
| SIDT1 | PIWIL4 | Q7Z3Z4 | 461 |
| SIDT1 | MOB1A | Q9H8S9 | 460 |
| SIDT1 | AGO2 | Q9UKV8 | 452 |
| SIDT1 | PGAP6 | Q9HCN3 | 448 |
| SIDT1 | EBAG9 | O00559 | 447 |
IntAct
3 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| NEK4 | E2F8 | psi-mi:“MI:0914”(association) | 0.350 |
| SIDT1 | proA | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (5): SIDT1 (Affinity Capture-MS), SIDT1 (Affinity Capture-MS), SIDT1 (Affinity Capture-MS), SIDT1 (Protein-RNA), TRAP1 (Cross-Linking-MS (XL-MS))
ESM2 similar proteins: A0A1B0GST9, A0A1B0GTU2, A0A1B0GV90, A0A590UK83, A2RRL7, A7S641, A8WG88, A9JTJ0, B9X187, K7EJ46, O00168, O08589, O13001, P0C2S0, P15383, P41237, P56513, P60606, P63160, P63161, Q04645, Q04646, Q04679, Q04680, Q0P467, Q28EH9, Q3SZX0, Q3UJ81, Q3URE8, Q3ZBP2, Q4LDR2, Q4R6L9, Q502I1, Q592E4, Q5XF36, Q6AXF6, Q6NWH5, Q6PBK8, Q6Q3F5, Q71RC9
Diamond homologs: D3ZEH5, Q6AXF6, Q6Q3F5, Q8CIF6, Q8NBJ9, Q9GYF0, Q9NXL6, Q9GZC8
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
136 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 116 |
| Likely benign | 2 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3849 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 3:113566416:GCA:G | acceptor_loss | 1.0000 |
| 3:113566417:CAG:C | acceptor_loss | 1.0000 |
| 3:113566418:A:AT | acceptor_loss | 1.0000 |
| 3:113566537:GGACT:G | donor_gain | 1.0000 |
| 3:113566538:GACT:G | donor_gain | 1.0000 |
| 3:113566538:GACTG:G | donor_gain | 1.0000 |
| 3:113566542:G:GG | donor_gain | 1.0000 |
| 3:113566546:G:GG | donor_gain | 1.0000 |
| 3:113567524:A:AG | acceptor_gain | 1.0000 |
| 3:113567524:ATATT:A | acceptor_gain | 1.0000 |
| 3:113567525:T:G | acceptor_gain | 1.0000 |
| 3:113567526:A:AG | acceptor_gain | 1.0000 |
| 3:113567526:ATT:A | acceptor_gain | 1.0000 |
| 3:113567526:ATTG:A | acceptor_gain | 1.0000 |
| 3:113567527:T:G | acceptor_gain | 1.0000 |
| 3:113567528:T:A | acceptor_gain | 1.0000 |
| 3:113567529:G:A | acceptor_gain | 1.0000 |
| 3:113567535:TTCA:T | acceptor_loss | 1.0000 |
| 3:113567538:A:AG | acceptor_gain | 1.0000 |
| 3:113567539:G:GA | acceptor_gain | 1.0000 |
| 3:113567539:GA:G | acceptor_gain | 1.0000 |
| 3:113567539:GAT:G | acceptor_gain | 1.0000 |
| 3:113567708:CCGG:C | donor_loss | 1.0000 |
| 3:113567710:GGTAA:G | donor_loss | 1.0000 |
| 3:113567711:G:GA | donor_loss | 1.0000 |
| 3:113567711:G:GG | donor_gain | 1.0000 |
| 3:113567712:T:G | donor_loss | 1.0000 |
| 3:113580607:GT:G | acceptor_gain | 1.0000 |
| 3:113581341:A:AG | acceptor_gain | 1.0000 |
| 3:113581348:A:AG | acceptor_gain | 1.0000 |
AlphaMissense
5480 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 3:113604957:T:C | L462P | 1.000 |
| 3:113608509:T:C | C565R | 1.000 |
| 3:113608510:G:A | C565Y | 1.000 |
| 3:113608511:C:G | C565W | 1.000 |
| 3:113604945:C:A | P458H | 0.999 |
| 3:113604945:C:G | P458R | 0.999 |
| 3:113607071:T:A | C479S | 0.999 |
| 3:113607071:T:C | C479R | 0.999 |
| 3:113607072:G:A | C479Y | 0.999 |
| 3:113607072:G:C | C479S | 0.999 |
| 3:113607073:T:G | C479W | 0.999 |
| 3:113607089:T:A | C485S | 0.999 |
| 3:113607089:T:C | C485R | 0.999 |
| 3:113607090:G:C | C485S | 0.999 |
| 3:113608491:A:C | S559R | 0.999 |
| 3:113608493:T:A | S559R | 0.999 |
| 3:113608493:T:G | S559R | 0.999 |
| 3:113608509:T:A | C565S | 0.999 |
| 3:113608510:G:C | C565S | 0.999 |
| 3:113608513:C:A | P566H | 0.999 |
| 3:113608526:C:A | N570K | 0.999 |
| 3:113608526:C:G | N570K | 0.999 |
| 3:113608533:T:C | F573L | 0.999 |
| 3:113608534:T:G | F573C | 0.999 |
| 3:113608535:C:A | F573L | 0.999 |
| 3:113608535:C:G | F573L | 0.999 |
| 3:113611008:A:T | D574V | 0.999 |
| 3:113611064:C:A | R593S | 0.999 |
| 3:113611067:C:G | H594D | 0.999 |
| 3:113611113:C:A | A609D | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000000030 (3:113534208 A>T), RS1000034132 (3:113633124 A>G,T), RS1000052448 (3:113607865 G>A), RS1000065940 (3:113535666 A>T), RS1000111601 (3:113614011 C>G,T), RS1000232070 (3:113621046 T>C), RS1000240618 (3:113568503 A>C), RS1000243437 (3:113544379 C>T), RS1000248869 (3:113620420 T>C), RS1000265937 (3:113578283 G>A), RS1000318818 (3:113541523 C>A,T), RS1000320082 (3:113562479 A>G), RS1000339519 (3:113566668 G>A,C), RS1000381381 (3:113602027 G>C), RS1000409024 (3:113557332 C>T)
Disease associations
OMIM: gene MIM:606816 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): long QT syndrome (MONDO:0002442)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
6 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001786_13 | Dental caries | 2.000000e-06 |
| GCST001942_7 | Prostate cancer | 4.000000e-13 |
| GCST004599_78 | Mean platelet volume | 3.000000e-10 |
| GCST009597_158 | Multiple sclerosis | 7.000000e-07 |
| GCST011320_4 | Type 2 diabetes or prostate cancer (pleiotropy) | 2.000000e-12 |
| GCST90002395_379 | Mean platelet volume | 5.000000e-19 |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008133 | Long QT Syndrome | C14.280.067.565; C14.280.123.625; C16.131.240.400.715; C23.550.073.547 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
18 total (human), top 18 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Copper | affects cotreatment, decreases expression, affects binding | 2 |
| Nickel | increases expression | 2 |
| Aflatoxin B1 | decreases methylation, increases methylation | 2 |
| triphenyl phosphate | affects expression | 1 |
| sodium arsenite | affects splicing, decreases expression | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| glycidamide | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| abrine | decreases expression | 1 |
| NSC 689534 | affects binding, decreases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Air Pollutants, Occupational | affects expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Cisplatin | increases expression | 1 |
| Estradiol | affects cotreatment, decreases expression | 1 |
| Methapyrilene | decreases methylation | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
Cellosaurus cell lines
3 cell lines: 2 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1HJ | Abcam A-549 SIDT1 KO 1 | Cancer cell line | Male |
| CVCL_B2Q3 | Abcam A-549 SIDT1 KO 2 | Cancer cell line | Male |
| CVCL_D7HI | Ubigene HEK293T SIDT1 KO | Transformed cell line | Female |
Clinical trials (associated diseases)
66 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02513940 | PHASE4 | COMPLETED | Influence of Testosterone Administration on Drug-Induced QT Interval Prolongation and Torsades de Pointes |
| NCT03834883 | PHASE4 | COMPLETED | Reducing the Risk of Drug-Induced QT Interval Lengthening in Women |
| NCT04169100 | PHASE4 | UNKNOWN | Novel Form of Acquired Long QT Syndrome |
| NCT04675788 | PHASE4 | COMPLETED | Novel Approaches for Minimizing Drug-Induced QT Interval Lengthening |
| NCT01648205 | PHASE2 | COMPLETED | Long-term Efficacy Study of Sodium Channel Blocker in LQT3 Patients |
| NCT02412709 | PHASE2 | UNKNOWN | Long QT Syndrome Screening in Newborns |
| NCT04581408 | PHASE2 | COMPLETED | Mutation-specific Therapy for the Long QT Syndrome |
| NCT00316459 | PHASE1 | COMPLETED | Study Evaluating the Effects of Multiple Oral Doses of ERB-041 on Cardiac Repolarization in Healthy Subjects |
| NCT01849003 | PHASE1 | COMPLETED | Study of the Effect of GS-6615 in Subjects With LQT-3 |
| NCT02365532 | PHASE1 | COMPLETED | Effect of Oral GS-6615 on Dofetilide-Induced QT Prolongation, Safety, and Tolerability in Healthy Adults |
| NCT02412098 | PHASE1 | COMPLETED | Pharmacokinetics of Eleclazine in Adults With Normal and Impaired Hepatic Function |
| NCT02441829 | PHASE1 | COMPLETED | Pharmacokinetics of Eleclazine in Adults With Normal and Impaired Renal Function |
| NCT05759962 | PHASE1 | COMPLETED | Phase 1 Study of LQT-1213 in Healthy Adults |
| NCT05906732 | PHASE1/PHASE2 | TERMINATED | Study of LQT-1213 on QTc-induced Prolongation in Healthy Adult Subjects (Part1) and on Congenital Long QT in Patients Diagnosed With Type 2 or 3 Long QT Syndrome (Part 2). |
| NCT00005176 | Not specified | COMPLETED | Long QT Syndrome-Population Genetics and Cardiac Studies |
| NCT00005250 | Not specified | COMPLETED | Linkage Study of Long QT Syndrome In An Amish Kindred |
| NCT00005367 | Not specified | COMPLETED | Epidemiology of Long QTand Asian Sudden Death in Sleep |
| NCT00221832 | Not specified | UNKNOWN | Molecular Genetic Screening and Identification of Congenital Arrhythmogenic Diseases |
| NCT00292032 | Not specified | COMPLETED | Registry of Unexplained Cardiac Arrest |
| NCT00335036 | Not specified | TERMINATED | Pediatric Lead Extractability and Survival Evaluation (PLEASE) |
| NCT00399412 | Not specified | COMPLETED | ECG Signal Collection From Long QT Syndrome, Wide QRS Complexes, Heart Failure, and Cardiac Resynchronization Patients |
| NCT00488254 | Not specified | COMPLETED | The Long QT Syndrome in Pregnancy |
| NCT00588965 | Not specified | COMPLETED | Effect of Beta-blocker Therapy on QTc Response in Exercise and Recovery in Normal Subjects |
| NCT01705925 | Not specified | COMPLETED | Multicenter Evaluation of Children and Young Adults With Genotype Positive Long QT Syndrome |
| NCT01903564 | Not specified | COMPLETED | Fetal and Neonatal Magnetophysiology |
| NCT02082431 | Not specified | COMPLETED | Determine the Incidence of Long QT Amongst a Large Cohort of Subjects Diagnosed With Unilateral or Bilateral Sensorineural Hearing Loss. |
| NCT02413450 | Not specified | ENROLLING_BY_INVITATION | Derivation of Human Induced Pluripotent Stem (iPS) Cells to Heritable Cardiac Arrhythmias |
| NCT02425189 | Not specified | COMPLETED | The Canadian National Long QT Syndrome Registry |
| NCT02439645 | Not specified | TERMINATED | A Registry to Determine the Clinical and Genetic Risk Factors for Torsade De Pointes |
| NCT02439658 | Not specified | UNKNOWN | Genetics of QT Prolongation With Antiarrhythmics |
| NCT02549664 | Not specified | COMPLETED | Exercise in Genetic Cardiovascular Conditions |
| NCT02581241 | Not specified | COMPLETED | Abnormal QT-Response to the Sudden Tachycardia Provoked by Standing in Individuals With Drug-induced Long QT Syndrome |
| NCT02680080 | Not specified | COMPLETED | Effect of Grapefruit on QT Interval in Healthy Volunteers and Patients With Congenital Long QT Syndrome |
| NCT02775513 | Not specified | UNKNOWN | Metabolism of Patients With Genetically Caused Cardiac Arrhythmia |
| NCT02814981 | Not specified | UNKNOWN | Hydroxyzine and Risk of Prolongation of QT Interval |
| NCT02876380 | Not specified | COMPLETED | Prospective Identification of Long QT Syndrome in Fetal Life |
| NCT03182777 | Not specified | COMPLETED | Safety of Local Dental Anesthesia in Patients With Cardiac Channelopathies |
| NCT03544918 | Not specified | COMPLETED | Prevalence of Congenital Long QT Syndrome and Acquired QT Prolongation in a Hospital Cohort |
| NCT03642405 | Not specified | UNKNOWN | Drug-induced Repolarization ECG Changes |
| NCT03678311 | Not specified | COMPLETED | Long QT Syndrome and Sleep Apnea |
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.