SIRT5
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Summary
SIRT5 (sirtuin 5, HGNC:14933) is a protein-coding gene on chromosome 6p23, encoding NAD-dependent protein deacylase sirtuin-5, mitochondrial (Q9NXA8). NAD-dependent lysine demalonylase, desuccinylase and deglutarylase that specifically removes malonyl, succinyl and glutaryl groups on target proteins.
This gene encodes a member of the sirtuin family of proteins, homologs to the yeast Sir2 protein. Members of the sirtuin family are characterized by a sirtuin core domain and grouped into four classes. The functions of human sirtuins have not yet been determined; however, yeast sirtuin proteins are known to regulate epigenetic gene silencing and suppress recombination of rDNA. Studies suggest that the human sirtuins may function as intracellular regulatory proteins with mono-ADP-ribosyltransferase activity. The protein encoded by this gene is included in class III of the sirtuin family. Alternative splicing of this gene results in multiple transcript variants.
Source: NCBI Gene 23408 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 72 total
- Druggable target: yes — 9 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_012241
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:14933 |
| Approved symbol | SIRT5 |
| Name | sirtuin 5 |
| Location | 6p23 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000124523 |
| Ensembl biotype | protein_coding |
| OMIM | 604483 |
| Entrez | 23408 |
Gene structure
Transcript identifiers
Ensembl transcripts: 71 — 59 protein_coding, 10 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000359782, ENST00000379250, ENST00000379262, ENST00000397350, ENST00000606117, ENST00000606427, ENST00000637463, ENST00000679658, ENST00000679663, ENST00000679922, ENST00000680151, ENST00000680402, ENST00000680432, ENST00000680442, ENST00000680707, ENST00000680747, ENST00000680754, ENST00000680852, ENST00000680937, ENST00000681012, ENST00000681231, ENST00000681243, ENST00000681818, ENST00000681905, ENST00000888571, ENST00000888572, ENST00000888573, ENST00000888574, ENST00000888575, ENST00000888576, ENST00000888577, ENST00000888578, ENST00000888579, ENST00000888580, ENST00000888581, ENST00000888582, ENST00000888583, ENST00000888584, ENST00000888585, ENST00000888586, ENST00000888587, ENST00000888588, ENST00000888589, ENST00000888590, ENST00000915669, ENST00000915670, ENST00000915671, ENST00000915672, ENST00000915673, ENST00000915674, ENST00000949353, ENST00000949354, ENST00000949355, ENST00000949356, ENST00000949357, ENST00000949358, ENST00000949359, ENST00000949360, ENST00000949361, ENST00000949362, ENST00000949363, ENST00000949364, ENST00000949365, ENST00000949366, ENST00000949367, ENST00000949368, ENST00000949369, ENST00000949370, ENST00000949371, ENST00000949372, ENST00000949373
RefSeq mRNA: 22 — MANE Select: NM_012241
NM_001193267, NM_001242827, NM_001376798, NM_001376799, NM_001376800, NM_001376801, NM_001376802, NM_001376803, NM_001376804, NM_001376805, NM_001376806, NM_001376807, NM_001376808, NM_001376809, NM_001376810, NM_001376811, NM_001376812, NM_001376813, NM_001376814, NM_001376815, NM_012241, NM_031244
CCDS: CCDS4526, CCDS4527, CCDS54966, CCDS93861, CCDS93862
Canonical transcript exons
ENST00000606117 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000848043 | 13588331 | 13588464 |
| ENSE00001372681 | 13579451 | 13579609 |
| ENSE00001374504 | 13574601 | 13574744 |
| ENSE00002320942 | 13611790 | 13615158 |
| ENSE00003468946 | 13584076 | 13584225 |
| ENSE00003695558 | 13599032 | 13599155 |
| ENSE00003696738 | 13591669 | 13591894 |
| ENSE00003697104 | 13600834 | 13600949 |
| ENSE00003702336 | 13596963 | 13597016 |
| ENSE00003702348 | 13595477 | 13595564 |
Expression profiles
Bgee: expression breadth ubiquitous, 278 present calls, max score 91.01.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 4.3201 / max 108.5483, expressed in 1569 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 65953 | 2.3252 | 1321 |
| 65954 | 1.7966 | 905 |
| 203870 | 0.1984 | 86 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| diaphragm | UBERON:0001103 | 91.01 | gold quality |
| apex of heart | UBERON:0002098 | 90.26 | gold quality |
| heart left ventricle | UBERON:0002084 | 89.28 | gold quality |
| cardiac ventricle | UBERON:0002082 | 89.20 | gold quality |
| buccal mucosa cell | CL:0002336 | 88.49 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 88.25 | gold quality |
| right lobe of liver | UBERON:0001114 | 88.21 | gold quality |
| liver | UBERON:0002107 | 88.01 | gold quality |
| body of tongue | UBERON:0011876 | 87.81 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 87.77 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 87.48 | gold quality |
| biceps brachii | UBERON:0001507 | 87.13 | gold quality |
| heart | UBERON:0000948 | 87.09 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 86.92 | gold quality |
| muscle of leg | UBERON:0001383 | 86.84 | gold quality |
| right atrium auricular region | UBERON:0006631 | 86.77 | gold quality |
| muscle organ | UBERON:0001630 | 86.55 | gold quality |
| vastus lateralis | UBERON:0001379 | 86.54 | gold quality |
| gastrocnemius | UBERON:0001388 | 86.53 | gold quality |
| cardiac atrium | UBERON:0002081 | 86.15 | gold quality |
| parietal pleura | UBERON:0002400 | 86.13 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 86.06 | gold quality |
| renal medulla | UBERON:0000362 | 86.04 | gold quality |
| calcaneal tendon | UBERON:0003701 | 85.95 | gold quality |
| bronchial epithelial cell | CL:0002328 | 85.86 | gold quality |
| medial globus pallidus | UBERON:0002477 | 85.81 | gold quality |
| tendon | UBERON:0000043 | 85.78 | gold quality |
| tongue | UBERON:0001723 | 85.49 | gold quality |
| quadriceps femoris | UBERON:0001377 | 85.10 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 85.07 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.82 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
3 targets.
| Target | Regulation |
|---|---|
| BECN1 | Activation |
| NFE2L2 | Activation |
| SIRT3 | Activation |
Upstream regulators (CollecTRI, top): BAG3
miRNA regulators (miRDB)
90 targeting SIRT5, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-196A-5P | 100.00 | 68.16 | 684 |
| HSA-MIR-196B-5P | 100.00 | 68.16 | 681 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-23B-5P | 99.98 | 66.07 | 587 |
| HSA-MIR-4666A-3P | 99.96 | 71.71 | 3434 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
| HSA-MIR-6772-5P | 99.94 | 67.01 | 577 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-3529-3P | 99.90 | 73.55 | 3045 |
| HSA-MIR-106A-5P | 99.90 | 73.94 | 2683 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-7162-3P | 99.89 | 68.16 | 1682 |
| HSA-MIR-17-5P | 99.89 | 73.83 | 2665 |
| HSA-MIR-106B-5P | 99.88 | 74.72 | 2795 |
Literature-anchored findings (GeneRIF, showing 40)
- SIRT5 consists of eight exons and is found in two isoforms, which encode a 310 aa and a 299 aa protein, respectively. (PMID:16484774)
- Analyses did not yield convincing evidence for associations of schizophrenia with SIRT5. (PMID:16827919)
- Results describe the substrates and regulation mechanisms for the human mitochondrial sirtuins Sirt3 and Sirt5. (PMID:18680753)
- SIRT5 represents a risk factor for mitochondrial dysfunction-related diseases, including Parkinson’s, through accelerated molecular aging of disease-related genes. (PMID:20887790)
- these results indicate that human SIRT5 potentially controls various primate-specific functions via two isoforms with different intracellular localizations or stabilities. (PMID:21143562)
- we demonstrate that Sirt5, a member of the class III lysine deacetylases, can catalyze lysine demalonylation and lysine desuccinylation reactions both in vitro and in vivo (PMID:21908771)
- study found that Sirt5 is an efficient protein lysine desuccinylase and demalonylase in vitro; protein lysine succinylation may represent a posttranslational modification that can be reversed by Sirt5 in vivo (PMID:22076378)
- NAD(+)-dependent SIRT deacetylase has a role in regulating the expression of mitochondrial steroidogenic P450 (PMID:22585829)
- The bicyclic intermediate structure provides insights into the desuccinylation mechanism of human sirtuin 5 (SIRT5). (PMID:22767592)
- Analysis of Sirt5 structures and activity data suggest that an Arg/succinate interaction is the molecular basis of the differential nicotinamide sensitivities of the two Sirt5 activities. (PMID:23028781)
- Downregulation of SIRT5 is associated with head and neck squamous cell carcinoma. (PMID:23475622)
- Results suggest a role for SIRT5 in influencing oocyte quality and in vitro fertilization outcomes. (PMID:23978077)
- These results reveal a novel post-translational regulation of SOD1 by means of succinylation and SIRT5-dependent desuccinylation, which is important for the growth of lung tumor cells. (PMID:24140062)
- Expression of SIRT5 in the entorhinal cortex, hippocampus, and white matter increases during the progression of Alzheimer disease. It is seen in activated microglia. (PMID:24464653)
- SIRT1/SIRT5-mediated PML deacetylation plays a role in the regulation of cancer cell survival. (PMID:25032863)
- High SIRT5 expression facilitates cancer cell growth and drug resistance in non-small cell lung cancer. (PMID:25070488)
- The results reveal the Sirt5 substrate acyl selectivity and its molecular basis and enable the design of inhibitors for Sirt5. (PMID:25111069)
- Results show that mitochondrial sirtuins SIRT3, SIRT4, and SIRT5 can promote increased mitochondrial respiration and cellular metabolism and respond to excess glucose by inducing a coordinated increase of glycolysis and respiration. (PMID:25165814)
- This study demonstrated that SIRT15 downregulation in the liver of non-alcoholic fatty liver disease patients. (PMID:25361925)
- Data showed that SIRT5 was involved in protein post-translational modifications through its potent demalonylase, desuccinylase, and deglutarylase activities. Also, the protein was found in the mitochondrial, cytoplasmic, and nuclear compartments. [review] (PMID:25717114)
- Use of a pan-sirtuin inhibitor and shRNA-mediated protein knockdown led us to uncover a role for the NAD(+)-dependent family of sirtuins, and in particular for SIRT2 and SIRT5, in the regulation of the necroptotic cell death program (PMID:26001219)
- Data indicate that compared to non-neoplastic endometria (NNE), endometrial cancer (EC) showed SIRT7 mRNA overexpression, whereas SIRT1, SIRT2, SIRT4 and SIRT5 were underexpressed, and no significant differences were observed for SIRT3 and SIRT6. (PMID:26701732)
- mutual cooperation between Y102 and R105 residues in promoting the desuccinylation versus deacetylation reaction in SIRT5. (PMID:27023330)
- Our study uncovers a SIRT5-dependent mechanism that regulates cellular NADPH homeostasis and redox potential by promoting IDH2 desuccinylation and G6PD deglutarylation. (PMID:27113762)
- The function of the three mitochondrial sirtuins (SIRT3, SIRT4, SIRT5) and their role in disease are reviewed. (PMID:27164052)
- Results demonstrated presence of endogenous SIRT5 in mitochondria of cultured SH-EP cells, identified down-regulation of cellular oxidative stress by SIRT5 as one of the possible mechanisms mediating the anti-apoptotic effect of SIRT5 in SH-EP cells. (PMID:27577743)
- a side chain-to-side chain cyclic pentapeptide harboring a central N(epsilon)-carboxyethyl-thiocarbamoyl-lysine residue behaved as a strong and selective (versus human SIRT1/2/3/6) inhibitor against human SIRT5-catalyzed deacylation reaction. (PMID:27626398)
- Results show that SIRT5 binds to, desuccinylates and inhibits PKM2 activity. Increased levels of reactive oxygen species (ROS) decreases succinylation and activity of PKM2 by increasing its binding to SIRT5. Moreover, inhibition of SIRT5 suppresses tumor cell proliferation through desuccinylation of PKM2 K498. (PMID:28036303)
- Data (including data from studies using knockout mice) suggest that SIRT5 is targeted to protein complexes on the inner mitochondrial membrane via affinity for cardiolipin to promote respiratory chain function, particularly Complex I and Complex II; SIRT5 expression is observed in inner mitochondrial membrane of periportal hepatocytes. (PMID:28458255)
- In this study, we summarize biological functions of SIRT5 reported in normal tissues and in cancer and discuss potential mechanisms whereby SIRT5 may impact tumorigenesis, particularly focusing on its reported roles in metabolic reprogramming. Finally, we review current efforts to target SIRT5 pharmacologically (PMID:28707979)
- SIRT5 gene has an important regulatory role in liver carcinogenesis, and may function as a novel potential therapeutic target for HCC. (PMID:29115436)
- High SIRT5 expression is associated with Cancer Cell Proliferation. (PMID:29180469)
- This study showed that SIRT5 supports the anaplerotic entry of glutamine into the TCA cycle in malignant phenotypes of CRC via activating GLUD1. (PMID:29416026)
- Our study reveals a novel role of SIRT5 in inhibiting peroxisome-induced oxidative stress, in liver protection, and in suppressing hepatocellular carcinoma development. (PMID:29491006)
- Sirt5 inhibitors in combination with chemotherapeutic agents and/or cetuximab may represent a therapeutic strategy for colorectal cancer patients harboring wild-type Kras. (PMID:29514096)
- SIRT5 plays pivotal roles in cardiac physiology and stress responses and is involved in the regulation of numerous aspects of myocardial energy metabolism. SIRT5 is implicated in neoplasia, as both a tumor promoter and suppressor in a context-specific manner, and may serve a protective function in the setting of neurodegenerative disorders. (PMID:29637793)
- The roles of the CDK2/SIRT5 axis in gastric cancer. (PMID:29896817)
- In human beings, SIRT5 gene encodes for four SIRT5 protein isoforms, namely SIRT5iso1, SIRT5iso2, SIRT5iso3, and SIRT5iso4. SIRT5(iso1-3) were mitochondria-localized, while SIRT5(iso4) localized mainly in cytoplasm. SIRT5(iso2-4) had little deacylase activity comparing with SIRT5(iso1). (PMID:29932920)
- The DNA variants and SNPs identified in acute Myocardial infection (AMI) patients may change SIRT5 level by affecting activity of SIRT5 gene promoter, contributing to the AMI development as a risk factor. (PMID:29981421)
- miR-299-3p suppresses migration, invasion and proliferation of Hepatocellular carcinoma cells via directly targeting SIRT5 (PMID:30170358)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | sirt5 | ENSDARG00000039684 |
| mus_musculus | Sirt5 | ENSMUSG00000054021 |
| rattus_norvegicus | Sirt5 | ENSRNOG00000017866 |
Paralogs (6): SIRT2 (ENSG00000068903), SIRT6 (ENSG00000077463), SIRT4 (ENSG00000089163), SIRT1 (ENSG00000096717), SIRT3 (ENSG00000142082), SIRT7 (ENSG00000187531)
Protein
Protein identifiers
NAD-dependent protein deacylase sirtuin-5, mitochondrial — Q9NXA8 (reviewed: Q9NXA8)
Alternative names: Regulatory protein SIR2 homolog 5, SIR2-like protein 5
All UniProt accessions (12): A0A7P0T877, A0A7P0T915, A0A7P0T9N1, A0A7P0T9X1, A0A7P0TA05, A0A7P0TBF5, A0A7P0Z490, A0A7P0Z4F6, A0A7P0Z4N6, Q9NXA8, Q7Z3A0, U3KQT8
UniProt curated annotations — full annotation on UniProt →
Function. NAD-dependent lysine demalonylase, desuccinylase and deglutarylase that specifically removes malonyl, succinyl and glutaryl groups on target proteins. Activates CPS1 and contributes to the regulation of blood ammonia levels during prolonged fasting: acts by mediating desuccinylation and deglutarylation of CPS1, thereby increasing CPS1 activity in response to elevated NAD levels during fasting. Activates SOD1 by mediating its desuccinylation, leading to reduced reactive oxygen species. Activates SHMT2 by mediating its desuccinylation. Modulates ketogenesis through the desuccinylation and activation of HMGCS2. Has weak NAD-dependent protein deacetylase activity; however this activity may not be physiologically relevant in vivo. Can deacetylate cytochrome c (CYCS) and a number of other proteins in vitro such as UOX.
Subunit / interactions. Interacts with CPS1. Interacts with PCCA. Monomer. Homodimer. Forms homodimers upon suramin binding.
Subcellular location. Mitochondrion matrix. Mitochondrion intermembrane space. Cytoplasm. Cytosol. Nucleus Cytoplasm. Mitochondrion Mitochondrion.
Tissue specificity. Widely expressed.
Activity regulation. Inhibited by suramin. NAD-dependent lysine desuccinylase activity is inhibited by physiological nicotinamide concentrations, while deacetylase activity is not. In contrast, resveratrol activates deacetylase activity, while inhibiting desuccinylase activity.
Cofactor. Binds 1 zinc ion per subunit.
Domain organisation. In contrast to class I sirtuins, class III sirtuins have only weak deacetylase activity. Difference in substrate specificity is probably due to a larger hydrophobic pocket with 2 residues (Tyr-102 and Arg-105) that bind to malonylated and succinylated substrates and define the specificity.
Miscellaneous. The mechanism of demalonylation and desuccinylation involves the presence of a 1’,2’-cyclic intermediate, suggesting that sirtuins use the ADP-ribose-peptidylamidate mechanism to remove acyl groups from substrate lysine residues.
Similarity. Belongs to the sirtuin family. Class III subfamily.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9NXA8-1 | 1 | yes |
| Q9NXA8-2 | 2 | |
| Q9NXA8-3 | 3 | |
| Q9NXA8-4 | 4 |
RefSeq proteins (22): NP_001180196, NP_001229756, NP_001363727, NP_001363728, NP_001363729, NP_001363730, NP_001363731, NP_001363732, NP_001363733, NP_001363734, NP_001363735, NP_001363736, NP_001363737, NP_001363738, NP_001363739, NP_001363740, NP_001363741, NP_001363742, NP_001363743, NP_001363744, NP_036373, NP_112534 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003000 | Sirtuin | Family |
| IPR026590 | Ssirtuin_cat_dom | Domain |
| IPR026591 | Sirtuin_cat_small_dom_sf | Homologous_superfamily |
| IPR027546 | Sirtuin_class_III | Family |
| IPR029035 | DHS-like_NAD/FAD-binding_dom | Homologous_superfamily |
| IPR050134 | NAD-dep_sirtuin_deacylases | Family |
Pfam: PF02146
Enzyme classification (BRENDA):
- EC 2.3.1.B43 — (BRENDA: organisms, substrates, inhibitors, Km, kcat entries)
Catalyzed reactions (Rhea), 3 shown:
- N(6)-glutaryl-L-lysyl-[protein] + NAD(+) + H2O = 2’’-O-glutaryl-ADP-D-ribose + nicotinamide + L-lysyl-[protein] (RHEA:47664)
- N(6)-succinyl-L-lysyl-[protein] + NAD(+) + H2O = 2’’-O-succinyl-ADP-D-ribose + nicotinamide + L-lysyl-[protein] (RHEA:47668)
- N(6)-malonyl-L-lysyl-[protein] + NAD(+) + H2O = 2’’-O-malonyl-ADP-D-ribose + nicotinamide + L-lysyl-[protein] (RHEA:47672)
UniProt features (56 total): helix 15, strand 12, binding site 11, splice variant 4, mutagenesis site 4, turn 3, sequence variant 2, transit peptide 1, chain 1, domain 1, sequence conflict 1, active site 1
Structure
Experimental structures (PDB)
27 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6EQS | X-RAY DIFFRACTION | 1.32 |
| 6LJK | X-RAY DIFFRACTION | 1.39 |
| 8Z54 | X-RAY DIFFRACTION | 1.45 |
| 5BWL | X-RAY DIFFRACTION | 1.55 |
| 3RIY | X-RAY DIFFRACTION | 1.55 |
| 7X3P | X-RAY DIFFRACTION | 1.56 |
| 9V0H | X-RAY DIFFRACTION | 1.67 |
| 4F56 | X-RAY DIFFRACTION | 1.7 |
| 6ACO | X-RAY DIFFRACTION | 1.71 |
| 6LJM | X-RAY DIFFRACTION | 1.78 |
| 6LJN | X-RAY DIFFRACTION | 1.8 |
| 8Z56 | X-RAY DIFFRACTION | 1.81 |
| 8Z55 | X-RAY DIFFRACTION | 1.83 |
| 2B4Y | X-RAY DIFFRACTION | 1.9 |
| 6ACL | X-RAY DIFFRACTION | 1.92 |
| 4G1C | X-RAY DIFFRACTION | 1.94 |
| 8Z57 | X-RAY DIFFRACTION | 1.96 |
| 6ACE | X-RAY DIFFRACTION | 1.98 |
| 3RIG | X-RAY DIFFRACTION | 2 |
| 4F4U | X-RAY DIFFRACTION | 2 |
| 2NYR | X-RAY DIFFRACTION | 2.06 |
| 5XHS | X-RAY DIFFRACTION | 2.19 |
| 8GBL | X-RAY DIFFRACTION | 2.24 |
| 6ACP | X-RAY DIFFRACTION | 2.3 |
| 8Z58 | X-RAY DIFFRACTION | 2.4 |
| 4HDA | X-RAY DIFFRACTION | 2.6 |
| 8GBN | X-RAY DIFFRACTION | 2.7 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9NXA8-F1 | 89.82 | 0.83 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 158 (proton acceptor)
Ligand- & substrate-binding residues (11): 207; 212; 249–251; 275–277; 293; 58–77; 102; 105; 140–143; 166; 169
Mutagenesis-validated functional residues (4):
| Position | Phenotype |
|---|---|
| 69 | abolishes enzyme activity. |
| 102 | increases the km for desuccinylation. |
| 105 | increases the km for desuccinylation. does not affect deacetylase activity. |
| 158 | abolishes desuccinylation and deglutarylation activity. |
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-2151201 | Transcriptional activation of mitochondrial biogenesis |
| R-HSA-70635 | Urea cycle |
| R-HSA-1592230 | Mitochondrial biogenesis |
| R-HSA-1852241 | Organelle biogenesis and maintenance |
MSigDB gene sets: 126 (showing top):
PID_HDAC_CLASSI_PATHWAY, GOBP_NEGATIVE_REGULATION_OF_REACTIVE_OXYGEN_SPECIES_METABOLIC_PROCESS, GOBP_MACROMOLECULE_DEACYLATION, GOBP_KETONE_METABOLIC_PROCESS, GOBP_SMALL_MOLECULE_BIOSYNTHETIC_PROCESS, GOBP_NEGATIVE_REGULATION_OF_MUSCLE_CELL_APOPTOTIC_PROCESS, GOBP_PEPTIDYL_LYSINE_MODIFICATION, GOBP_RESPONSE_TO_ISCHEMIA, GOBP_REGULATION_OF_KETONE_METABOLIC_PROCESS, GOBP_REGULATION_OF_REACTIVE_OXYGEN_SPECIES_METABOLIC_PROCESS, GOCC_MITOCHONDRIAL_ENVELOPE, GOBP_KETONE_BIOSYNTHETIC_PROCESS, GOBP_CHROMATIN_REMODELING, GOBP_REACTIVE_OXYGEN_SPECIES_METABOLIC_PROCESS, GOBP_NEGATIVE_REGULATION_OF_STRIATED_MUSCLE_CELL_APOPTOTIC_PROCESS
GO Biological Process (12): response to ischemia (GO:0002931), protein deacetylation (GO:0006476), mitochondrion organization (GO:0007005), regulation of ketone biosynthetic process (GO:0010566), negative regulation of cardiac muscle cell apoptotic process (GO:0010667), response to nutrient levels (GO:0031667), protein demalonylation (GO:0036046), peptidyl-lysine demalonylation (GO:0036047), protein desuccinylation (GO:0036048), peptidyl-lysine desuccinylation (GO:0036049), protein deglutarylation (GO:0061698), negative regulation of reactive oxygen species metabolic process (GO:2000378)
GO Molecular Function (10): zinc ion binding (GO:0008270), histone deacetylase activity, NAD-dependent (GO:0017136), NAD-dependent protein lysine deacetylase activity (GO:0034979), protein-malonyllysine demalonylase activity (GO:0036054), protein-succinyllysine desuccinylase activity (GO:0036055), protein-glutaryllysine deglutarylase activity (GO:0061697), NAD+ binding (GO:0070403), transferase activity (GO:0016740), acyltransferase activity, transferring groups other than amino-acyl groups (GO:0016747), metal ion binding (GO:0046872)
GO Cellular Component (7): nucleus (GO:0005634), mitochondrion (GO:0005739), mitochondrial inner membrane (GO:0005743), mitochondrial intermembrane space (GO:0005758), mitochondrial matrix (GO:0005759), cytosol (GO:0005829), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Mitochondrial biogenesis | 1 |
| Metabolism of amino acids and derivatives | 1 |
| Organelle biogenesis and maintenance | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| protein deacylation | 4 |
| NAD-dependent protein lysine deacylase activity | 3 |
| peptidyl-lysine modification | 2 |
| intracellular membrane-bounded organelle | 2 |
| cytoplasm | 2 |
| cellular anatomical structure | 2 |
| response to stress | 1 |
| organelle organization | 1 |
| regulation of biosynthetic process | 1 |
| regulation of ketone metabolic process | 1 |
| ketone biosynthetic process | 1 |
| regulation of small molecule metabolic process | 1 |
| cardiac muscle cell apoptotic process | 1 |
| negative regulation of striated muscle cell apoptotic process | 1 |
| regulation of cardiac muscle cell apoptotic process | 1 |
| response to stimulus | 1 |
| protein demalonylation | 1 |
| protein desuccinylation | 1 |
| negative regulation of metabolic process | 1 |
| reactive oxygen species metabolic process | 1 |
| regulation of reactive oxygen species metabolic process | 1 |
| transition metal ion binding | 1 |
| histone deacetylase activity | 1 |
| NAD-dependent protein lysine deacetylase activity | 1 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 1 |
| catalytic activity, acting on a protein | 1 |
| peptidyl-lysine desuccinylation | 1 |
| anion binding | 1 |
| NAD binding | 1 |
| catalytic activity | 1 |
| acyltransferase activity | 1 |
| cation binding | 1 |
| organelle inner membrane | 1 |
| mitochondrial membrane | 1 |
| mitochondrial envelope | 1 |
| organelle envelope lumen | 1 |
| mitochondrion | 1 |
| intracellular organelle lumen | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
2424 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SIRT5 | CYCS | P00001 | 874 |
| SIRT5 | IDH2 | P48735 | 738 |
| SIRT5 | SIRT4 | Q9Y6E7 | 677 |
| SIRT5 | SIRT3 | Q9NTG7 | 671 |
| SIRT5 | CPS1 | P31327 | 636 |
| SIRT5 | HDAC11 | Q96DB2 | 635 |
| SIRT5 | PPARGC1A | Q9UBK2 | 616 |
| SIRT5 | ACSS1 | Q9NUB1 | 611 |
| SIRT5 | GLUD1 | P00367 | 605 |
| SIRT5 | NDUFA9 | Q16795 | 596 |
| SIRT5 | SIRT7 | Q9NRC8 | 585 |
| SIRT5 | SIRT6 | Q8N6T7 | 584 |
| SIRT5 | SIRT2 | Q8IXJ6 | 582 |
| SIRT5 | HDAC10 | Q969S8 | 571 |
| SIRT5 | F5H3C5 | F5H3C5 | 568 |
| SIRT5 | SOD2 | P04179 | 568 |
IntAct
51 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CWC15 | CTNNBL1 | psi-mi:“MI:0914”(association) | 0.850 |
| TAL1 | TCF4 | psi-mi:“MI:0914”(association) | 0.690 |
| rep | GLA | psi-mi:“MI:0914”(association) | 0.530 |
| HOXB5 | VPS37C | psi-mi:“MI:0914”(association) | 0.530 |
| YBEY | NME4 | psi-mi:“MI:0914”(association) | 0.530 |
| CPLX3 | CIAO1 | psi-mi:“MI:0914”(association) | 0.530 |
| ZSCAN18 | ZNF24 | psi-mi:“MI:0914”(association) | 0.530 |
| DMD | UTRN | psi-mi:“MI:0914”(association) | 0.530 |
| PARP12 | GCLM | psi-mi:“MI:0914”(association) | 0.530 |
| TMEM184A | SLC33A1 | psi-mi:“MI:0914”(association) | 0.530 |
| SIRT5 | GLS | psi-mi:“MI:0403”(colocalization) | 0.460 |
| SIRT5 | GLS | psi-mi:“MI:0915”(physical association) | 0.460 |
| SIRT5 | HADHA | psi-mi:“MI:0915”(physical association) | 0.400 |
| CKAP2L | SIRT5 | psi-mi:“MI:0915”(physical association) | 0.400 |
| SIRT5 | SNCG | psi-mi:“MI:0915”(physical association) | 0.400 |
| MYC | SIRT5 | psi-mi:“MI:0915”(physical association) | 0.400 |
| SGTB | ARHGAP32 | psi-mi:“MI:0914”(association) | 0.350 |
| HNRNPD | ARHGAP32 | psi-mi:“MI:0914”(association) | 0.350 |
| BAG6 | CNOT1 | psi-mi:“MI:0914”(association) | 0.350 |
| SORT1 | SH3PXD2B | psi-mi:“MI:0914”(association) | 0.350 |
| Pik3r2 | EDIL3 | psi-mi:“MI:0914”(association) | 0.350 |
| ARHGAP27 | MCRIP1 | psi-mi:“MI:0914”(association) | 0.350 |
| rep | HERC2 | psi-mi:“MI:0914”(association) | 0.350 |
| rep | PRDX5 | psi-mi:“MI:0914”(association) | 0.350 |
| CAPZB | ENAH | psi-mi:“MI:0914”(association) | 0.350 |
| PCDH10 | TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
| MALSU1 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| HOXA4 | RABGAP1L | psi-mi:“MI:0914”(association) | 0.350 |
| RABL3 | GPR89A | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (102): SIRT5 (Affinity Capture-MS), SIRT5 (Affinity Capture-MS), SIRT5 (Affinity Capture-MS), SIRT5 (Affinity Capture-MS), SIRT5 (Affinity Capture-MS), SIRT5 (Affinity Capture-MS), GLS (Affinity Capture-Western), SIRT5 (Affinity Capture-Western), SIRT5 (Affinity Capture-MS), SIRT5 (Affinity Capture-MS), SIRT5 (Affinity Capture-MS), SIRT5 (Affinity Capture-MS), SIRT5 (Affinity Capture-MS), SIRT5 (Affinity Capture-MS), SIRT5 (Affinity Capture-MS)
ESM2 similar proteins: A0A0J9UVG7, A0A250YGJ5, A0A2K5TU92, A0A559KX76, A8NWP2, C8V3W5, E1BRE2, E2RDZ6, E9GD30, F4P804, F7DKV7, F7EZ75, G5EB76, I1RN13, J4W6X9, O13492, P0CS88, P16081, P21334, P22945, P27783, P36842, P36858, P38681, P39863, P39869, P43100, P53686, P54898, P59941, Q3ZBQ0, Q57V41, Q59ST1, Q5AI90, Q5AW69, Q5HZN8, Q5R6G3, Q5RBF1, Q5RJQ4, Q68F47
Diamond homologs: A0A0J9UVG7, A0QC96, A0R2N3, A5U1J9, A8MBU4, A8NWP2, A9A0B2, A9SDL4, B4EVF5, C6A243, E1BRE2, E2RDZ6, E9GD30, F7D4X9, F7DKV7, F7EZ75, O07595, O25849, O28597, O30124, O58669, O67919, P0A2F2, P0A2F3, P53685, P66814, P75960, P9WGG2, P9WGG3, Q20480, Q3ZBQ0, Q4JBN2, Q4Q2Y6, Q4UZX0, Q584D5, Q5AI90, Q5HU51, Q5HZN8, Q5JG47, Q5L014
SIGNOR signaling
13 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| BAG3 | “down-regulates quantity by repression” | SIRT5 | “transcriptional regulation” |
| SIRT5 | “up-regulates quantity by expression” | BECN1 | “transcriptional regulation” |
| SIRT5 | “up-regulates activity” | GLS | binding |
| SIRT5 | “up-regulates quantity by expression” | NFE2L2 | “transcriptional regulation” |
| SIRT5 | “up-regulates quantity by expression” | SIRT3 | “transcriptional regulation” |
| SIRT5 | “down-regulates activity” | ACOX1 | “catalytic activity” |
| SIRT5 | “up-regulates activity” | G6PD | “catalytic activity” |
| SIRT5 | “up-regulates activity” | IDH2 | “catalytic activity” |
| SIRT5 | “up-regulates activity” | HMGCS2 | “post translational modification” |
| SIRT5 | “up-regulates activity” | CPS1 | “post translational modification” |
| SIRT5 | “up-regulates activity” | LDHB | deacetylation |
| SIRT5 | “down-regulates activity” | SHMT2 | “post translational modification” |
Disease & clinical
Clinical variants and AI predictions
ClinVar
72 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 51 |
| Likely benign | 5 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2337 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:13579450:GTAA:G | acceptor_gain | 1.0000 |
| 6:13584062:T:TA | acceptor_gain | 1.0000 |
| 6:13584072:A:AG | acceptor_gain | 1.0000 |
| 6:13584073:A:G | acceptor_gain | 1.0000 |
| 6:13584074:A:AG | acceptor_gain | 1.0000 |
| 6:13584075:G:GG | acceptor_gain | 1.0000 |
| 6:13584226:G:GG | donor_gain | 1.0000 |
| 6:13591894:GGT:G | donor_loss | 1.0000 |
| 6:13591895:G:GA | donor_loss | 1.0000 |
| 6:13591896:T:A | donor_loss | 1.0000 |
| 6:13574685:G:GT | donor_gain | 0.9900 |
| 6:13574697:G:GT | donor_gain | 0.9900 |
| 6:13574788:G:GT | donor_gain | 0.9900 |
| 6:13574789:G:T | donor_gain | 0.9900 |
| 6:13579197:AGT:A | donor_gain | 0.9900 |
| 6:13579449:A:AG | acceptor_gain | 0.9900 |
| 6:13579450:G:GC | acceptor_gain | 0.9900 |
| 6:13579450:GT:G | acceptor_gain | 0.9900 |
| 6:13579450:GTA:G | acceptor_gain | 0.9900 |
| 6:13584060:T:A | acceptor_gain | 0.9900 |
| 6:13584071:TAAAG:T | acceptor_gain | 0.9900 |
| 6:13584074:AGCCC:A | acceptor_gain | 0.9900 |
| 6:13584075:GC:G | acceptor_gain | 0.9900 |
| 6:13584075:GCC:G | acceptor_gain | 0.9900 |
| 6:13584075:GCCC:G | acceptor_gain | 0.9900 |
| 6:13584075:GCCCG:G | acceptor_gain | 0.9900 |
| 6:13584221:TTC:T | donor_gain | 0.9900 |
| 6:13584222:TCAAG:T | donor_loss | 0.9900 |
| 6:13584224:AAG:A | donor_loss | 0.9900 |
| 6:13584225:AGTAA:A | donor_loss | 0.9900 |
AlphaMissense
1990 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 6:13599081:T:C | F223L | 0.999 |
| 6:13599083:T:A | F223L | 0.999 |
| 6:13599083:T:G | F223L | 0.999 |
| 6:13588423:T:C | F70L | 0.998 |
| 6:13588425:C:A | F70L | 0.998 |
| 6:13588425:C:G | F70L | 0.998 |
| 6:13591720:T:C | F101L | 0.998 |
| 6:13591722:C:A | F101L | 0.998 |
| 6:13591722:C:G | F101L | 0.998 |
| 6:13591714:T:A | W99R | 0.997 |
| 6:13591714:T:C | W99R | 0.997 |
| 6:13588424:T:G | F70C | 0.996 |
| 6:13588446:G:C | W77C | 0.996 |
| 6:13588446:G:T | W77C | 0.996 |
| 6:13591839:G:C | Q140H | 0.996 |
| 6:13591839:G:T | Q140H | 0.996 |
| 6:13599078:T:A | W222R | 0.996 |
| 6:13599078:T:C | W222R | 0.996 |
| 6:13599082:T:G | F223C | 0.996 |
| 6:13600907:C:A | A272D | 0.996 |
| 6:13591690:T:C | F91L | 0.995 |
| 6:13591692:T:A | F91L | 0.995 |
| 6:13591692:T:G | F91L | 0.995 |
| 6:13591716:G:C | W99C | 0.995 |
| 6:13591716:G:T | W99C | 0.995 |
| 6:13591733:G:C | R105P | 0.995 |
| 6:13591736:G:C | R106P | 0.995 |
| 6:13599147:T:C | C245R | 0.995 |
| 6:13588399:A:C | S62R | 0.994 |
| 6:13588401:T:A | S62R | 0.994 |
dbSNP variants (sampled 300 via entrez): RS1000075415 (6:13586661 T>C), RS1000174741 (6:13574612 C>G), RS1000181390 (6:13585559 A>G), RS1000194051 (6:13598881 G>A,C,T), RS1000211386 (6:13592096 C>T), RS1000213658 (6:13576165 A>G), RS1000282651 (6:13586946 G>A,T), RS1000314500 (6:13582671 G>T), RS1000363584 (6:13605050 T>C), RS1000425158 (6:13601358 T>G), RS1000535704 (6:13607052 C>T), RS1000770458 (6:13575749 A>G), RS1000892964 (6:13588290 C>A), RS1000928597 (6:13611564 T>G), RS1000950711 (6:13581573 T>A)
Disease associations
OMIM: gene MIM:604483 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST008766_2 | Perceived intensity of sweet substances | 9.000000e-06 |
| GCST90011899_37 | Aspartate aminotransferase levels | 4.000000e-18 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004736 | aspartate aminotransferase measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL2163183 (SINGLE PROTEIN), CHEMBL4742324 (PROTEIN-PROTEIN INTERACTION)
Molecules with ChEMBL bioactivity
9 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 426,071 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1140 | NIACINAMIDE | 4 | 231,688 |
| CHEMBL1201346 | BALSALAZIDE | 4 | 8,319 |
| CHEMBL1358 | FULVESTRANT | 4 | 56,655 |
| CHEMBL1541 | CEFIXIME | 4 | 27,787 |
| CHEMBL249837 | METHACYCLINE | 4 | 13,102 |
| CHEMBL608 | PROBUCOL | 4 | 30,435 |
| CHEMBL265502 | SURAMIN | 3 | 36,848 |
| CHEMBL12131 | CLOSANTEL | 2 | 7,051 |
| CHEMBL46469 | ANTHRALIN | 2 | 14,186 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — 3.5.1.- Histone deacetylases (HDACs)
Most potent curated ligand interactions (1 total), top 1:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| compound 2 [Maurer et al., 2012] | Inhibition | 5.64 | pIC50 |
Binding affinities (BindingDB)
10 measured of 11 human assays (11 total across all organisms); most potent 10 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| CHEMBL5199270 | KI | 0.5 nM | |
| CHEMBL5209031 | KI | 7 nM | |
| CHEMBL5185695 | IC50 | 290 nM | |
| phenyl N-[1-anilino-6-(heptanethioylamino)-1-oxohexan-2-yl]carbamate | IC50 | 310 nM | US-9359293: Methods of treatment using modulators of SIRT2 |
| CHEMBL5188575 | IC50 | 370 nM | |
| CHEMBL5172115 | IC50 | 830 nM | |
| CHEMBL5171330 | IC50 | 900 nM | |
| phenyl N-[1-anilino-6-(butanethioylamino)-1-oxohexan-2-yl]carbamate | IC50 | 2400 nM | US-9359293: Methods of treatment using modulators of SIRT2 |
| CHEMBL5201503 | IC50 | 5100 nM | |
| phenyl N-[1-anilino-6-(ethanethioylamino)-1-oxohexan-2-yl]carbamate | IC50 | 30000 nM | US-9359293: Methods of treatment using modulators of SIRT2 |
ChEMBL bioactivities
414 potent at pChembl≥5 of 711 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 11.00 | Kd | 0.01 | nM | CHEMBL4091790 |
| 9.92 | Kd | 0.12 | nM | CHEMBL4064460 |
| 9.30 | Ki | 0.5 | nM | CHEMBL5199270 |
| 8.46 | Ki | 3.5 | nM | CHEMBL4068735 |
| 8.46 | Ki | 3.5 | nM | CHEMBL4092751 |
| 8.46 | Ki | 3.5 | nM | CHEMBL4065067 |
| 8.46 | Ki | 3.5 | nM | CHEMBL4100475 |
| 8.46 | Ki | 3.5 | nM | CHEMBL4073655 |
| 8.22 | Ki | 6 | nM | CHEMBL4636862 |
| 8.15 | Ki | 7 | nM | CHEMBL4091258 |
| 8.15 | Ki | 7 | nM | CHEMBL5209031 |
| 7.87 | Ki | 13.6 | nM | CHEMBL4064460 |
| 7.81 | IC50 | 15.4 | nM | CHEMBL4091258 |
| 7.72 | IC50 | 19.1 | nM | CHEMBL4064460 |
| 7.66 | Ki | 22 | nM | CHEMBL5172115 |
| 7.64 | Ki | 23 | nM | CHEMBL4100351 |
| 7.52 | IC50 | 30.3 | nM | CHEMBL4091790 |
| 7.52 | IC50 | 30 | nM | CHEMBL4091790 |
| 7.43 | Ki | 37 | nM | CHEMBL5188575 |
| 7.35 | Ki | 45 | nM | CHEMBL6114923 |
| 7.34 | IC50 | 45.9 | nM | CHEMBL4100351 |
| 7.34 | IC50 | 46.1 | nM | CHEMBL4065953 |
| 7.23 | IC50 | 59 | nM | CHEMBL4083471 |
| 7.08 | Ki | 83.2 | nM | CHEMBL4085990 |
| 7.07 | IC50 | 86.1 | nM | CHEMBL4084850 |
| 7.05 | IC50 | 89.9 | nM | CHEMBL4101463 |
| 7.04 | IC50 | 91.1 | nM | CHEMBL4085990 |
| 7.02 | IC50 | 95 | nM | CHEMBL4079616 |
| 7.00 | IC50 | 100 | nM | ANTHRALIN |
| 6.99 | IC50 | 101.9 | nM | CHEMBL4078223 |
| 6.96 | IC50 | 110 | nM | CHEMBL4636862 |
| 6.96 | IC50 | 110 | nM | CHEMBL5177283 |
| 6.92 | IC50 | 119.9 | nM | CHEMBL4097208 |
| 6.89 | Ki | 129 | nM | CHEMBL6160490 |
| 6.87 | Ki | 135 | nM | CHEMBL4079212 |
| 6.82 | IC50 | 150 | nM | CHEMBL6160490 |
| 6.75 | IC50 | 176.6 | nM | CHEMBL4092610 |
| 6.68 | IC50 | 207 | nM | CHEMBL4063400 |
| 6.68 | IC50 | 210 | nM | CHEMBL5398650 |
| 6.64 | IC50 | 230 | nM | CHEMBL5177283 |
| 6.62 | IC50 | 240 | nM | CHEMBL5398650 |
| 6.60 | IC50 | 250 | nM | CHEMBL5398650 |
| 6.58 | Ki | 263 | nM | CHEMBL4068365 |
| 6.58 | IC50 | 260 | nM | CHEMBL5197912 |
| 6.58 | IC50 | 260 | nM | CHEMBL5398650 |
| 6.58 | IC50 | 260 | nM | CHEMBL6133053 |
| 6.56 | IC50 | 273.5 | nM | CHEMBL4079212 |
| 6.55 | IC50 | 280 | nM | CHEMBL6109002 |
| 6.54 | IC50 | 290 | nM | CHEMBL5185695 |
| 6.53 | IC50 | 295.1 | nM | CHEMBL4093875 |
PubChem BioAssay actives
370 with measured affinity, of 1075 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3S)-3-carboxy-3-naphthalen-2-ylsulfanylpropanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455616: Binding affinity to human N-terminal biotinylated SIRT5 by surface plasmon resonance spectroscopy | kd | <0.0001 | uM |
| (4S)-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[2-[[4-[3-[2-[2-[3-[5-[(3aS,4S,6aR)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoylamino]propoxy]ethoxy]ethoxy]propylamino]-4-oxobutanoyl]amino]acetyl]amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3S)-3-carboxy-3-naphthalen-2-ylsulfanylpropanoyl]amino]hexanoyl]amino]-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-5-oxopentanoic acid | 1455616: Binding affinity to human N-terminal biotinylated SIRT5 by surface plasmon resonance spectroscopy | kd | 0.0001 | uM |
| (2S)-N-[(2S)-1-(cyclobutylamino)-3-(1H-indol-3-yl)-1-oxopropan-2-yl]-2-[(3-fluorophenyl)sulfonylamino]-6-[2-(2H-tetrazol-5-yl)ethylcarbamothioylamino]hexanamide | 1885222: Binding affinity to SIRT5 (unknown origin) assessed as deglutarylase activity by measuring inhibition constant | ki | 0.0005 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[3-carboxy-3-(2-pyrazin-2-ylethylsulfanyl)propanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ki | 0.0035 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[3-carboxy-3-(2-pyridin-2-ylethylsulfanyl)propanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ki | 0.0035 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3S)-3-carboxy-3-[2-(3,5-dimethyl-1,2-oxazol-4-yl)ethylsulfanyl]propanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ki | 0.0035 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[3-carboxy-3-(2-pyridin-4-ylethylsulfanyl)propanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ki | 0.0035 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3R)-3-carboxy-3-[2-(3,5-dimethyl-1,2-oxazol-4-yl)ethylsulfanyl]propanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ki | 0.0035 | uM |
| 3-[[(5S)-6-[[(2S)-1-(cyclobutylamino)-3-(1H-indol-3-yl)-1-oxopropan-2-yl]amino]-5-[(3-fluorophenyl)sulfonylamino]-6-oxohexyl]carbamothioylamino]propanoic acid | 1885222: Binding affinity to SIRT5 (unknown origin) assessed as deglutarylase activity by measuring inhibition constant | ki | 0.0060 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3S)-3-carboxy-3-(naphthalen-1-ylmethylsulfanyl)propanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ki | 0.0070 | uM |
| (2S)-N-[(2S)-1-(cyclobutylamino)-3-(1H-indol-3-yl)-1-oxopropan-2-yl]-2-[(3-fluorophenyl)sulfonylamino]-6-[2-(5-oxo-4H-1,2,4-oxadiazol-3-yl)ethylcarbamothioylamino]hexanamide | 1885222: Binding affinity to SIRT5 (unknown origin) assessed as deglutarylase activity by measuring inhibition constant | ki | 0.0070 | uM |
| 5-[[(5S)-6-[[(2S)-3-(1H-indol-3-yl)-1-oxo-1-(propan-2-ylamino)propan-2-yl]amino]-6-oxo-5-(phenylmethoxycarbonylamino)hexyl]amino]-5-sulfanylidenepentanoic acid | 1885222: Binding affinity to SIRT5 (unknown origin) assessed as deglutarylase activity by measuring inhibition constant | ki | 0.0220 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3S)-3-carboxy-3-(3,4-dichlorophenyl)sulfanylpropanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ki | 0.0230 | uM |
| 3-[[(5S)-6-[[(2S)-3-(1H-indol-3-yl)-1-oxo-1-(propan-2-ylamino)propan-2-yl]amino]-6-oxo-5-(phenylmethoxycarbonylamino)hexyl]carbamothioylamino]propanoic acid | 1885222: Binding affinity to SIRT5 (unknown origin) assessed as deglutarylase activity by measuring inhibition constant | ki | 0.0370 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3S)-3-carboxy-3-(3,4-dimethylphenyl)sulfanylpropanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ic50 | 0.0461 | uM |
| (2S)-4-[[(5S)-6-[[(2S)-1-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-carboxy-1-oxobutan-2-yl]amino]-5-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-oxohexyl]amino]-2-methyl-2-naphthalen-1-ylsulfanyl-4-oxobutanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ic50 | 0.0590 | uM |
| (4S)-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[[2-[[4-[3-[2-[2-[3-[5-[(3aS,4S,6aR)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoylamino]propoxy]ethoxy]ethoxy]propylamino]-4-oxobutanoyl]amino]acetyl]amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[(3-carboxy-3-naphthalen-2-ylsulfanylpropanoyl)amino]hexanoyl]amino]-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-5-oxopentanoic acid | 1455621: Competitive inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ki | 0.0832 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3S)-3-carboxy-3-(3,5-dichlorophenyl)sulfanylpropanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ic50 | 0.0861 | uM |
| (2R)-4-[[(5S)-6-[[(2S)-1-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-carboxy-1-oxobutan-2-yl]amino]-5-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-oxohexyl]amino]-2-methyl-2-naphthalen-1-ylsulfanyl-4-oxobutanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ic50 | 0.0899 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3S)-3-carboxy-3-naphthalen-1-ylsulfanylpropanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ic50 | 0.0950 | uM |
| Anthralin | 1455622: Inhibition of SIRT5 (unknown origin) using GGQSLK[succ]FGKG as substrate after 30 mins | ic50 | 0.1000 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3S)-3-carboxy-3-(4-chlorophenyl)sulfanylpropanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ic50 | 0.1019 | uM |
| 3-[[(5S)-6-[[(2S)-1-(cyclopentylamino)-3-(1H-indol-3-yl)-1-oxopropan-2-yl]amino]-5-[(3-fluorophenyl)sulfonylamino]-6-oxohexyl]carbamothioylamino]propanoic acid | 1873015: Inhibition of SIRT5 (unknown origin) | ic50 | 0.1100 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3S)-3-carboxy-3-(3-chlorophenyl)sulfanylpropanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ic50 | 0.1199 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3S)-3-carboxy-3-phenylsulfanylpropanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ki | 0.1350 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3S)-3-carboxy-3-(2,4-dichlorophenyl)sulfanylpropanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ic50 | 0.1766 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3R)-3-carboxy-3-(naphthalen-1-ylmethylsulfanyl)propanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ic50 | 0.2070 | uM |
| 4-[(E)-[1-[4-(4-chlorophenyl)-1,3-thiazol-2-yl]-3-methyl-5-oxopyrazol-4-ylidene]methyl]benzoic acid | 2007544: Inhibition of human SIRT5 by fluorescence based analysis | ic50 | 0.2100 | uM |
| 3-[[(5S)-6-[[(2S)-1-(cyclopropylamino)-3-(1H-indol-3-yl)-1-oxopropan-2-yl]amino]-5-[(3-fluorophenyl)sulfonylamino]-6-oxohexyl]carbamothioylamino]propanoic acid | 1885221: Inhibition of SIRT5 deglutarylase activity (unknown origin) | ic50 | 0.2600 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[(3-carboxy-4-phenylbutanoyl)amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ki | 0.2630 | uM |
| (2S)-N-[(2S)-1-(cyclobutylamino)-3-(1H-indol-3-yl)-1-oxopropan-2-yl]-2-[(3-fluorophenyl)sulfonylamino]-6-[2-(5-oxo-2H-1,2-oxazol-3-yl)ethylcarbamothioylamino]hexanamide | 1885221: Inhibition of SIRT5 deglutarylase activity (unknown origin) | ic50 | 0.2900 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3S)-3-carboxy-3-(2,5-dichlorophenyl)sulfanylpropanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ic50 | 0.2951 | uM |
| 3-[3-[[2-(2-chloroanilino)-5-[(3R)-3-phenylpyrrolidine-1-carbonyl]pyrimidin-4-yl]amino]propylcarbamothioylamino]propanoic acid | 2010903: Inhibition of human SIRT5 (34 to 269 residues) using Ac-Leu-Gly-Ser-Lys (Su)-AMC as fluorogenic substrate in presence of NAD+ | ic50 | 0.3097 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3S)-3-carboxy-3-(3,4-dimethoxyphenyl)sulfanylpropanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ic50 | 0.3258 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3S)-3-benzylsulfanyl-3-carboxypropanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ic50 | 0.3357 | uM |
| 3-[[(5S)-6-(3-hydroxyanilino)-5-[[(2S)-4-methyl-2-(phenylmethoxycarbonylamino)pentanoyl]amino]-6-oxohexyl]carbamothioylamino]propanoic acid | 1885220: Inhibition of SIRT5 desuccinylase activity (unknown origin) | ic50 | 0.3400 | uM |
| (2S)-4-[[(5S)-5-[[(2S)-2-acetamido-4-methylpentanoyl]amino]-6-[[(2S)-1-amino-1-oxopropan-2-yl]amino]-6-oxohexyl]amino]-2-naphthalen-2-ylsulfanyl-4-oxobutanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ic50 | 0.3504 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3R)-3-carboxy-3-[(2-chlorophenyl)methylsulfanyl]propanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ic50 | 0.3524 | uM |
| 8-[(2,6-dioxo-1,3-dipropyl-7H-purin-8-yl)disulfanyl]-1,3-dipropyl-7H-purine-2,6-dione | 1873015: Inhibition of SIRT5 (unknown origin) | ic50 | 0.3900 | uM |
| 8-[(1,3-diethyl-2,6-dioxo-7H-purin-8-yl)disulfanyl]-1,3-diethyl-7H-purine-2,6-dione | 1873015: Inhibition of SIRT5 (unknown origin) | ic50 | 0.4200 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3R)-3-carboxy-3-[(2,4-dichlorophenyl)methylsulfanyl]propanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ic50 | 0.4315 | uM |
| 3-[[6-(3,4-dihydro-2H-thiochromen-4-ylamino)-6-oxo-5-(phenylmethoxycarbonylamino)hexyl]carbamothioylamino]propanoic acid | 1873014: Inhibition of GST-tagged SIRT5 (unknown origin) incubated for 10 mins by HPLC based analysis | ic50 | 0.4500 | uM |
| 3-ethyl-8-[[3-ethyl-2,6-dioxo-1-(2-phenylethyl)-7H-purin-8-yl]disulfanyl]-1-(2-phenylethyl)-7H-purine-2,6-dione | 1873015: Inhibition of SIRT5 (unknown origin) | ic50 | 0.4500 | uM |
| 3-ethyl-8-[[3-ethyl-1-(oxan-4-ylmethyl)-2,6-dioxo-7H-purin-8-yl]disulfanyl]-1-(oxan-4-ylmethyl)-7H-purine-2,6-dione | 1873015: Inhibition of SIRT5 (unknown origin) | ic50 | 0.5000 | uM |
| 4-[(E)-[3-methyl-5-oxo-1-[4-[4-(trifluoromethyl)phenyl]-1,3-thiazol-2-yl]pyrazol-4-ylidene]methyl]benzoic acid | 2007544: Inhibition of human SIRT5 by fluorescence based analysis | ic50 | 0.5200 | uM |
| 3-[3-[[2-(2-chloroanilino)-5-(3-phenylpyrrolidine-1-carbonyl)pyrimidin-4-yl]amino]propylcarbamothioylamino]propanoic acid | 2010903: Inhibition of human SIRT5 (34 to 269 residues) using Ac-Leu-Gly-Ser-Lys (Su)-AMC as fluorogenic substrate in presence of NAD+ | ic50 | 0.5297 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3S)-3-carboxy-3-[(2-chlorophenyl)methylsulfanyl]propanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ic50 | 0.5333 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3S)-3-carboxy-3-[(2,4-dichlorophenyl)methylsulfanyl]propanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ic50 | 0.5433 | uM |
| (4S)-5-[[(2S)-1-[[2-[[(2S)-1-amino-3-methyl-1-oxobutan-2-yl]amino]-2-oxoethyl]amino]-3-(4-hydroxyphenyl)-1-oxopropan-2-yl]amino]-4-[[(2S)-2-[[(2S)-2-[[(2S)-2-[(2-benzamidoacetyl)amino]-3-methylbutanoyl]amino]-4-methylpentanoyl]amino]-6-[[(3S)-3-carboxy-3-(2,6-dichlorophenyl)sulfanylpropanoyl]amino]hexanoyl]amino]-5-oxopentanoic acid | 1455609: Inhibition of human recombinant N-terminal Strep2-tagged SIRT5 expressed in Escherichia coli BL21 (DE3) using Abz-GVLK(glutaryl)AY(NO2)GV-NH2 as substrate in presence of NAD+ by fluorescence assay | ic50 | 0.5768 | uM |
| 3-[3-[[2-(2-chloroanilino)-5-[[(1R)-1-phenylpropyl]carbamoyl]pyrimidin-4-yl]amino]propylcarbamothioylamino]propanoic acid | 2010903: Inhibition of human SIRT5 (34 to 269 residues) using Ac-Leu-Gly-Ser-Lys (Su)-AMC as fluorogenic substrate in presence of NAD+ | ic50 | 0.5800 | uM |
CTD chemical–gene interactions
36 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | decreases expression, decreases methylation | 3 |
| Resveratrol | affects cotreatment, increases expression, affects reaction, decreases acetylation | 2 |
| Estradiol | affects expression, increases expression | 2 |
| GSK-J4 | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | increases expression | 1 |
| diisononyl phthalate | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| 4-aminophenylarsenoxide | affects binding, decreases reaction | 1 |
| beta-methylcholine | affects expression | 1 |
| pentanal | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| N-(oxo-5,6-dihydrophenanthridin-2-yl)-N,N-dimethylacetamide hydrochloride | decreases reaction, increases expression | 1 |
| abrine | decreases expression | 1 |
| jinfukang | increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Arsenic Trioxide | affects binding, decreases reaction | 1 |
| Atrazine | decreases expression | 1 |
| Cisplatin | decreases response to substance, increases expression | 1 |
| Plant Extracts | affects cotreatment, increases expression | 1 |
| Potassium Dichromate | increases expression | 1 |
| Silver | decreases expression | 1 |
| Smoke | decreases expression | 1 |
| Thiram | decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
ChEMBL screening assays
232 unique, capped per target: 232 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2166661 | Binding | Activity of human SIRT5 assessed as decrotonylation of compound at 50 uM after 1 hr by trypsin developer-based fluorescence assay | Substrates for efficient fluorometric screening employing the NAD-dependent sirtuin 5 lysine deacylase (KDAC) enzyme. — J Med Chem |
Cellosaurus cell lines
3 cell lines: 3 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B2FF | Abcam HeLa SIRT5 KO | Cancer cell line | Female |
| CVCL_B9RU | Abcam A-549 SIRT5 KO | Cancer cell line | Male |
| CVCL_TL34 | HAP1 SIRT5 (-) | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.