SIVA1
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Also known as SIVASiva-1Siva-2CD27BP
Summary
SIVA1 (SIVA1 apoptosis inducing factor, HGNC:17712) is a protein-coding gene on chromosome 14q32.33, encoding Apoptosis regulatory protein Siva (O15304). Induces CD27-mediated apoptosis. It is a selective cancer dependency (DepMap: 11.1% of cell lines).
This gene encodes an E3 ubiquitin ligase that regulates cell cycle progression, cell proliferation and apoptosis. The N-terminus of this protein binds to the cytoplasmic tail of the CD27 antigen, a member of the tumor necrosis factor receptor (TNFR) superfamily. In response to UV radiation-induced DNA damage, this protein has been shown to mediate the ubiquitination of proliferating cell nuclear antigen (PCNA), an important step in translesion DNA synthesis.
Source: NCBI Gene 10572 — RefSeq curated summary.
At a glance
- GWAS associations: 3
- Clinical variants (ClinVar): 42 total
- Cancer dependency (DepMap): dependent in 11.1% of screened cell lines
- MANE Select transcript:
NM_006427
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:17712 |
| Approved symbol | SIVA1 |
| Name | SIVA1 apoptosis inducing factor |
| Location | 14q32.33 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | SIVA, Siva-1, Siva-2, CD27BP |
| Ensembl gene | ENSG00000184990 |
| Ensembl biotype | protein_coding |
| OMIM | 605567 |
| Entrez | 10572 |
Gene structure
Transcript identifiers
Ensembl transcripts: 11 — 8 protein_coding, 2 retained_intron, 1 nonsense_mediated_decay
ENST00000329967, ENST00000347067, ENST00000535554, ENST00000553810, ENST00000553819, ENST00000554013, ENST00000556195, ENST00000556431, ENST00000862413, ENST00000862414, ENST00000928313
RefSeq mRNA: 2 — MANE Select: NM_006427
NM_006427, NM_021709
CCDS: CCDS9992, CCDS9993
Canonical transcript exons
ENST00000329967 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001290218 | 104756604 | 104756760 |
| ENSE00001304289 | 104753147 | 104753319 |
| ENSE00002523289 | 104759428 | 104759654 |
| ENSE00003682029 | 104755630 | 104755824 |
Expression profiles
Bgee: expression breadth ubiquitous, 273 present calls, max score 98.56.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 39.3424 / max 446.3323, expressed in 1818 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 141841 | 25.1458 | 1802 |
| 141840 | 14.1965 | 1804 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| endometrium epithelium | UBERON:0004811 | 98.56 | gold quality |
| popliteal artery | UBERON:0002250 | 98.11 | gold quality |
| tibial artery | UBERON:0007610 | 98.11 | gold quality |
| aorta | UBERON:0000947 | 97.77 | gold quality |
| mucosa of stomach | UBERON:0001199 | 97.52 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 97.49 | gold quality |
| thoracic aorta | UBERON:0001515 | 97.48 | gold quality |
| ascending aorta | UBERON:0001496 | 97.47 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 97.42 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 97.42 | gold quality |
| lower esophagus | UBERON:0013473 | 97.41 | gold quality |
| adenohypophysis | UBERON:0002196 | 97.39 | gold quality |
| right testis | UBERON:0004534 | 97.32 | gold quality |
| left testis | UBERON:0004533 | 97.30 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 97.25 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 97.20 | gold quality |
| oocyte | CL:0000023 | 97.11 | gold quality |
| right coronary artery | UBERON:0001625 | 97.10 | gold quality |
| right lobe of liver | UBERON:0001114 | 97.06 | gold quality |
| left coronary artery | UBERON:0001626 | 97.06 | gold quality |
| endocervix | UBERON:0000458 | 97.00 | gold quality |
| left uterine tube | UBERON:0001303 | 96.97 | gold quality |
| gastrocnemius | UBERON:0001388 | 96.92 | gold quality |
| right atrium auricular region | UBERON:0006631 | 96.89 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 96.84 | gold quality |
| ectocervix | UBERON:0012249 | 96.83 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 96.79 | gold quality |
| right ovary | UBERON:0002118 | 96.78 | gold quality |
| left ovary | UBERON:0002119 | 96.74 | gold quality |
| coronary artery | UBERON:0001621 | 96.70 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-4 | yes | 45.94 |
| E-GEOD-125970 | yes | 22.34 |
| E-MTAB-9467 | yes | 14.17 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): E2F1, EGR1, TP53
miRNA regulators (miRDB)
13 targeting SIVA1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-6888-3P | 99.97 | 65.95 | 1170 |
| HSA-MIR-3121-3P | 99.82 | 71.96 | 3630 |
| HSA-MIR-651-5P | 99.64 | 68.49 | 1104 |
| HSA-MIR-4743-3P | 99.62 | 68.12 | 2095 |
| HSA-MIR-12123 | 99.52 | 71.79 | 2990 |
| HSA-MIR-664A-3P | 99.22 | 71.08 | 2696 |
| HSA-MIR-583 | 98.71 | 67.44 | 1791 |
| HSA-MIR-10398-5P | 97.12 | 64.94 | 1051 |
| HSA-MIR-215-3P | 97.02 | 68.01 | 1209 |
| HSA-MIR-3177-3P | 92.33 | 62.02 | 156 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 11.1% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 29)
- Siva-1 putative amphipathic helical region (SAH) binds BCL-XL and sensitizes cells to UV radiation induced apoptosis (PMID:14739602)
- Overexpression of Siva-1 in T lymphocytes triggers the activation of a caspase-dependent death pathway including a pivotal mitochondrial step. Both N- and C-terminal domains of Siva proteins display the ability to induce a cell death process in T cells. (PMID:15034012)
- Siva-1 has a role, through its inhibitory effect on NF-kappaB activity, in TCR-mediated AICD with implications in peripheral tolerance, T-cell homeostasis and cancer (PMID:16491128)
- determined the N-terminal part of Siva as the binding region for CD27; the peroxisomal membrane protein PMP22 is a new interaction partner of Siva and may be involved in the host response against CVB3. (PMID:16683188)
- Confirming the anti-apoptotic role of HPV-16 E7 in the HaCaT cellular model, evaluated by nuclear morphology, it was also found that Siva-1 expression produced a significant increase of the apoptotic rate in UV radiation-exposed HaCaT cells. (PMID:17348035)
- Results suggest that Siva-1 might participate in the CD4-initiated signaling apoptotic pathway induced by the HIV-1 envelope in T-lymphoid cells. (PMID:17653867)
- lysophosphatidic acid 2 receptor mediates down-regulation of Siva-1 to promote cell survival (PMID:17965021)
- Data show that Siva and pyrin are co-expressed, and that pyrin modulates the apoptotic response to oxidative stress mediated by Siva. (PMID:18330885)
- Telethonin might be involved in CVB3-mediated cell damage and in the resulting cardiac dysfunction due to the interaction with Siva. (PMID:18849585)
- Siva-1 has a role in negatively regulating NF-kappaB activation by targeting TRAF2. (PMID:19392652)
- Siva1 is an important mediator for the Hdm2-p53 interaction and is an integral component of the negative feedback mechanism for p53 inhibition. (PMID:19590512)
- Siva-1 forms a functional complex with Tyk2 and participates in the transduction of signals that inhibit B lymphocyte growth. (PMID:20727854)
- These results suggest that Siva-mediated unprovoked apoptosis is not likely to be involved in the pathogenesis of Familial Mediterranean fever. (PMID:20934406)
- These findings suggest that the caspase-dependent pathway for induction of apoptosis is involved in Siva-1-mediated influenza A virus replication. (PMID:21048035)
- Data show that low levels of Siva1 and Ser16-phosphorylated stathmin correlate with high metastatic states of breast cancer cells. (PMID:21768358)
- negative regulator of IL-2 gene expression in Treg cells (PMID:21955384)
- Upon stimulation of thromboxane A2, degradation of Siva1 is impeded, resulting in an accumulation of the protein, which translocates from the nucleus to the cytosol. (PMID:22343716)
- Siva1 promotes the ubiquitination and degradation of ARF, which in turn affects the stability of p53. (PMID:23462994)
- SIVA1 interacts with RAD18 and serves as a molecular bridge between RAD18 and PCNA, thus targeting the E3 ligase activity of RAD18 onto PCNA. (PMID:24958773)
- Functional test demonstrated that Siva1 significantly inhibited the invasion and migration of HCT116 cells. (PMID:25374190)
- electrical stimulation -inducible SIVA1 modulates p53 activities in proliferating keratinocytes, and exogenous electrical stimulation affects p53/HDM2/SIVA1 axis leading to increased proliferation during re-epithelialization (PMID:25431847)
- These findings collectively reveal a novel role for the p53 target gene SIVA both in regulating metabolism and in enabling tumorigenesis, independently of p53. (PMID:25813352)
- Loss of SIVA1 expression is associated with nasopharyngeal carcinoma. (PMID:26406409)
- SIVA1 enhances SSBP3 ubiquitination and promotes SSBP3 protein turnover (PMID:30363057)
- PM2.5 exposure induces alveolar epithelial cell apoptosis and causes emphysema through p53/Siva-1. (PMID:32329870)
- Siva1 regulates multidrug resistance of gastric cancer by targeting MDR1 and MRP1 via the NFkappaB pathway. (PMID:32626967)
- N6-methyladenosine demethylase FTO enhances chemo-resistance in colorectal cancer through SIVA1-mediated apoptosis. (PMID:36307991)
- Inhibition of apoptosis-regulatory protein Siva-1 reverses multidrug resistance in gastric cancer by targeting PCBP1. (PMID:37303491)
- Mutation of SIVA, a candidate metastasis gene identified from clonally related bilateral breast cancers, promotes breast cancer cell spread in vitro and in vivo. (PMID:38722955)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | siva1 | ENSDARG00000114552 |
| mus_musculus | Siva1 | ENSMUSG00000064326 |
| rattus_norvegicus | Siva1 | ENSRNOG00000028640 |
Protein
Protein identifiers
Apoptosis regulatory protein Siva — O15304 (reviewed: O15304)
Alternative names: CD27-binding protein
All UniProt accessions (5): O15304, B4DTY2, G3V3U1, G3V439, H0YJN1
UniProt curated annotations — full annotation on UniProt →
Function. Induces CD27-mediated apoptosis. Inhibits BCL2L1 isoform Bcl-x(L) anti-apoptotic activity. Inhibits activation of NF-kappa-B and promotes T-cell receptor-mediated apoptosis.
Subunit / interactions. Binds through its N-terminal region to the C-terminus of CD27 and to PXMP2/PMP22. Binds to the C-terminus of TNFRSF18/GITR. Isoform 1 binds to BCL2L1/BCLX isoform Bcl-x(L) but not to BAX. (Microbial infection) Interacts with coxsackievirus B3 capsid protein VP2; this interaction inhibits the binding of SIVA1 to CD27.
Subcellular location. Cytoplasm. Nucleus.
Tissue specificity. Ubiquitous. Mostly expressed in thymus, testis, ovary, prostate, small intestine and spleen and less in colon.
Post-translational modifications. Phosphorylated by ABL2/ARG in response to oxidative stress.
Cofactor. Isoform 1 binds 3 Zn(2+) ions. Isoform 2 binds 2 Zn(2+) ions.
Miscellaneous. Mouse isoform 2 has been shown to have no pro-apoptotic activity. However, human isoform 2 has been shown to be capable of inducing apoptosis.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O15304-1 | 1, Siva-1 | yes |
| O15304-2 | 2, Siva-2 |
RefSeq proteins (2): NP_006418, NP_068355 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR022773 | Siva | Family |
Pfam: PF05458
UniProt features (8 total): region of interest 2, modified residue 2, mutagenesis site 2, chain 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O15304-F1 | 76.34 | 0.21 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (2): 34, 70
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 34 | abolishes phosphorylation and apoptotic activity. |
| 53 | no effect on phosphorylation or apoptotic activity. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 224 (showing top):
MODULE_93, TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_MONOCYTE_UP, GOBP_T_CELL_HOMEOSTASIS, GOBP_CANONICAL_NF_KAPPAB_SIGNAL_TRANSDUCTION, GOBP_LYMPHOCYTE_HOMEOSTASIS, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GOBP_ANTIGEN_RECEPTOR_MEDIATED_SIGNALING_PATHWAY, GOBP_EXTRINSIC_APOPTOTIC_SIGNALING_PATHWAY, GOBP_POSITIVE_REGULATION_OF_ORGANELLE_ORGANIZATION, GOBP_MITOCHONDRIAL_TRANSPORT, GOLDRATH_ANTIGEN_RESPONSE, GOBP_NEGATIVE_REGULATION_OF_INTRACELLULAR_SIGNAL_TRANSDUCTION, WEI_MYCN_TARGETS_WITH_E_BOX, GOBP_REGULATION_OF_MITOCHONDRION_ORGANIZATION, GOBP_REGULATION_OF_IMMUNE_RESPONSE
GO Biological Process (9): activation-induced cell death of T cells (GO:0006924), negative regulation of canonical NF-kappaB signal transduction (GO:0043124), T cell receptor signaling pathway (GO:0050852), T cell apoptotic process (GO:0070231), extrinsic apoptotic signaling pathway (GO:0097191), intrinsic apoptotic signaling pathway (GO:0097193), positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway (GO:1901030), apoptotic process (GO:0006915), symbiont entry into host cell (GO:0046718)
GO Molecular Function (7): virus receptor activity (GO:0001618), tumor necrosis factor receptor binding (GO:0005164), CD27 receptor binding (GO:0005175), zinc ion binding (GO:0008270), metal ion binding (GO:0046872), protein binding (GO:0005515), 2 iron, 2 sulfur cluster binding (GO:0051537)
GO Cellular Component (4): nucleoplasm (GO:0005654), cytoplasm (GO:0005737), mitochondrion (GO:0005739), nucleus (GO:0005634)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| apoptotic signaling pathway | 3 |
| tumor necrosis factor receptor superfamily binding | 2 |
| cellular anatomical structure | 2 |
| intracellular membrane-bounded organelle | 2 |
| T cell homeostasis | 1 |
| T cell apoptotic process | 1 |
| canonical NF-kappaB signal transduction | 1 |
| regulation of canonical NF-kappaB signal transduction | 1 |
| negative regulation of intracellular signal transduction | 1 |
| antigen receptor-mediated signaling pathway | 1 |
| lymphocyte apoptotic process | 1 |
| cell surface receptor signaling pathway | 1 |
| intracellular signal transduction | 1 |
| positive regulation of organelle organization | 1 |
| positive regulation of mitochondrial membrane permeability | 1 |
| positive regulation of transport | 1 |
| mitochondrial outer membrane permeabilization | 1 |
| regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway | 1 |
| programmed cell death | 1 |
| execution phase of apoptosis | 1 |
| viral life cycle | 1 |
| symbiont entry into host | 1 |
| symbiont entry into host cell | 1 |
| exogenous protein binding | 1 |
| transition metal ion binding | 1 |
| cation binding | 1 |
| binding | 1 |
| iron-sulfur cluster binding | 1 |
| nuclear lumen | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
Protein interactions and networks
STRING
798 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SIVA1 | CD27 | P26842 | 950 |
| SIVA1 | BCL2L1 | Q07817 | 820 |
| SIVA1 | NHERF2 | Q15599 | 646 |
| SIVA1 | CD70 | P32970 | 638 |
| SIVA1 | TNFRSF18 | Q9Y5U5 | 628 |
| SIVA1 | AIFM1 | O95831 | 584 |
| SIVA1 | TNFRSF4 | P43489 | 505 |
| SIVA1 | TNFRSF8 | P28908 | 497 |
| SIVA1 | TRIP6 | Q15654 | 488 |
| SIVA1 | LPAR2 | Q9HBW0 | 479 |
| SIVA1 | CDKN2A | P42771 | 467 |
| SIVA1 | S100A8 | P05109 | 466 |
| SIVA1 | RAD18 | Q9NS91 | 456 |
| SIVA1 | TRPC6 | Q9Y210 | 448 |
| SIVA1 | FADD | Q13158 | 438 |
IntAct
22 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CD27 | SIVA1 | psi-mi:“MI:0915”(physical association) | 0.630 |
| SIVA1 | CD27 | psi-mi:“MI:0915”(physical association) | 0.630 |
| E7 | SIVA1 | psi-mi:“MI:0915”(physical association) | 0.580 |
| SIVA1 | E7 | psi-mi:“MI:0915”(physical association) | 0.580 |
| PXMP2 | SIVA1 | psi-mi:“MI:0915”(physical association) | 0.510 |
| SIVA1 | PXMP2 | psi-mi:“MI:0915”(physical association) | 0.510 |
| SIVA1 | BCL2L1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| BCL2L1 | SIVA1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| BCL2 | SIVA1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| PCNA | SIVA1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| BEX3 | SIVA1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| erpA | SIVA1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| pyrE | SIVA1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| SIVA1 | MYZAP | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (99): CDKN2A (Reconstituted Complex), SIVA1 (Two-hybrid), SIVA1 (Affinity Capture-Western), SIVA1 (Phenotypic Enhancement), TYK2 (Affinity Capture-Western), SIVA1 (Two-hybrid), SIVA1 (Affinity Capture-Western), SIVA1 (Phenotypic Enhancement), SIVA1 (Two-hybrid), CD4 (Reconstituted Complex), TCAP (Two-hybrid), SIVA1 (Reconstituted Complex), SIVA1 (Two-hybrid), SIVA1 (Affinity Capture-Western), STMN1 (Two-hybrid)
ESM2 similar proteins: A2Y040, D3ZVU1, E1BC52, G3X912, O15304, O43900, O54880, O54926, O73916, P59692, P86346, Q08AE8, Q0IH40, Q0VCH3, Q0VDN7, Q1LXR6, Q24371, Q38741, Q3UIW5, Q3UJP5, Q4VBF2, Q58D79, Q5BKU9, Q5EA28, Q5XI59, Q657C0, Q67V61, Q6AVZ9, Q6DRL4, Q6NVV7, Q757Y7, Q75LH6, Q768S4, Q8BQ33, Q8K1S6, Q8R3A2, Q8R4R9, Q8R4S0, Q8RWM3, Q8TAE6
Diamond homologs: O15304, O54926, P59692
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| ABL2 | up-regulates | SIVA1 | phosphorylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
42 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 37 |
| Likely benign | 2 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
604 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 14:104753310:G:GT | donor_gain | 1.0000 |
| 14:104753320:G:GG | donor_gain | 1.0000 |
| 14:104753320:GT:G | donor_loss | 1.0000 |
| 14:104753321:T:A | donor_loss | 1.0000 |
| 14:104759414:T:A | acceptor_gain | 1.0000 |
| 14:104753315:CTTCG:C | donor_gain | 0.9900 |
| 14:104753317:TCG:T | donor_gain | 0.9900 |
| 14:104755628:A:AG | acceptor_gain | 0.9900 |
| 14:104755629:G:GG | acceptor_gain | 0.9900 |
| 14:104755629:GAGAA:G | acceptor_gain | 0.9900 |
| 14:104755821:GCTG:G | donor_gain | 0.9900 |
| 14:104756756:GTGGA:G | donor_gain | 0.9900 |
| 14:104756761:G:GG | donor_gain | 0.9900 |
| 14:104759417:C:A | acceptor_gain | 0.9900 |
| 14:104759423:C:A | acceptor_gain | 0.9900 |
| 14:104759423:CGCA:C | acceptor_loss | 0.9900 |
| 14:104759426:A:AG | acceptor_gain | 0.9900 |
| 14:104759426:AGCT:A | acceptor_gain | 0.9900 |
| 14:104759426:AGCTG:A | acceptor_loss | 0.9900 |
| 14:104759427:G:GG | acceptor_gain | 0.9900 |
| 14:104759427:GC:G | acceptor_gain | 0.9900 |
| 14:104759427:GCT:G | acceptor_gain | 0.9900 |
| 14:104759427:GCTG:G | acceptor_gain | 0.9900 |
| 14:104759427:GCTGC:G | acceptor_gain | 0.9900 |
| 14:104753270:G:GT | donor_gain | 0.9800 |
| 14:104753322:GAGTG:G | donor_loss | 0.9800 |
| 14:104755629:GA:G | acceptor_gain | 0.9800 |
| 14:104755822:CTGGT:C | donor_loss | 0.9800 |
| 14:104755823:TGG:T | donor_loss | 0.9800 |
| 14:104755825:G:GG | donor_gain | 0.9800 |
AlphaMissense
1122 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 14:104753252:G:C | K17N | 0.968 |
| 14:104753252:G:T | K17N | 0.968 |
| 14:104753223:T:C | F8L | 0.961 |
| 14:104753225:C:A | F8L | 0.961 |
| 14:104753225:C:G | F8L | 0.961 |
| 14:104753316:T:C | F39L | 0.951 |
| 14:104753318:C:A | F39L | 0.951 |
| 14:104753318:C:G | F39L | 0.951 |
| 14:104753210:G:C | K3N | 0.950 |
| 14:104753210:G:T | K3N | 0.950 |
| 14:104755656:G:T | G49W | 0.933 |
| 14:104759456:T:C | C167R | 0.930 |
| 14:104755645:T:C | L45P | 0.927 |
| 14:104753250:A:G | K17E | 0.926 |
| 14:104755636:C:T | T42I | 0.925 |
| 14:104755786:G:T | G92V | 0.918 |
| 14:104756738:T:C | C150R | 0.918 |
| 14:104756630:T:C | C114R | 0.916 |
| 14:104755774:T:A | I88N | 0.905 |
| 14:104753251:A:C | K17T | 0.904 |
| 14:104755648:T:A | L46Q | 0.904 |
| 14:104755650:T:C | F47L | 0.904 |
| 14:104755652:C:A | F47L | 0.904 |
| 14:104755652:C:G | F47L | 0.904 |
| 14:104756669:T:C | C127R | 0.903 |
| 14:104759474:T:C | F173L | 0.902 |
| 14:104759476:C:A | F173L | 0.902 |
| 14:104759476:C:G | F173L | 0.902 |
| 14:104755657:G:A | G49E | 0.899 |
| 14:104756632:T:G | C114W | 0.899 |
dbSNP variants (sampled 300 via entrez): RS1000321908 (14:104751244 C>T), RS1000703057 (14:104754259 C>T), RS1000920333 (14:104760126 T>G), RS1001233178 (14:104754659 T>G), RS1001290359 (14:104755030 T>C), RS1002442380 (14:104760042 A>G), RS1003081820 (14:104756209 G>A), RS1003103009 (14:104757966 C>G,T), RS1003103086 (14:104755567 T>C), RS1003300575 (14:104759749 G>A,T), RS1003414110 (14:104754836 C>T), RS1003544986 (14:104757664 G>C), RS10047838 (14:104751968 G>A,C), RS1005017245 (14:104751601 G>A), RS1005237251 (14:104760066 C>T)
Disease associations
OMIM: gene MIM:605567 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003524_5 | Endometrial cancer | 4.000000e-08 |
| GCST003525_4 | Endometrial endometrioid carcinoma | 4.000000e-08 |
| GCST010653_85 | Thyroid stimulating hormone levels | 2.000000e-16 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:1001514 | endometrial endometrioid carcinoma |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
55 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects expression, decreases expression, increases expression | 3 |
| Cisplatin | decreases expression, decreases reaction, increases expression | 3 |
| Air Pollutants | affects cotreatment, increases abundance, increases oxidation, affects expression | 2 |
| Benzo(a)pyrene | increases methylation, decreases expression | 2 |
| Ozone | increases oxidation, increases abundance, affects expression, affects cotreatment | 2 |
| Valproic Acid | increases expression, affects expression | 2 |
| Cyclosporine | decreases expression | 2 |
| dicrotophos | decreases expression | 1 |
| beauvericin | decreases expression | 1 |
| chloroacetaldehyde | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| bisphenol A | affects expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| zinc chromate | decreases expression, increases abundance | 1 |
| methacrylaldehyde | affects cotreatment, increases oxidation, increases abundance | 1 |
| chromium hexavalent ion | decreases expression, increases abundance | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| K 7174 | decreases expression | 1 |
| erucylphospho-N,N,N-trimethylpropylammonium | decreases expression | 1 |
| Grape Seed Proanthocyanidins | affects cotreatment, increases expression | 1 |
| Bortezomib | decreases expression | 1 |
| Cidofovir | increases expression | 1 |
| Acetaminophen | affects expression | 1 |
| Acrolein | affects cotreatment, increases oxidation, increases abundance | 1 |
| Air Pollutants, Occupational | affects expression | 1 |
| Arsenic | increases methylation | 1 |
| Calcitriol | decreases expression, affects cotreatment | 1 |
Cellosaurus cell lines
1 cell lines: 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B3H1 | Abcam HEK293T SIVA1 KO | Transformed cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): endometrial carcinoma