SLA
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Also known as SLA1SLAP-1hSLAPSLAP
Summary
SLA (Src like adaptor, HGNC:10902) is a protein-coding gene on chromosome 8q24.22, encoding Src-like-adapter (Q13239). Adapter protein, which negatively regulates T-cell receptor (TCR) signaling.
Predicted to enable epidermal growth factor receptor binding activity and phosphotyrosine residue binding activity. Predicted to be involved in regulation of MAPK cascade and signal transduction. Predicted to be located in cytosol. Predicted to be part of COP9 signalosome. Predicted to be active in cytoplasm; nucleoplasm; and plasma membrane.
Source: NCBI Gene 6503 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 150 total — 6 pathogenic, 2 likely-pathogenic
- MANE Select transcript:
NM_001045556
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:10902 |
| Approved symbol | SLA |
| Name | Src like adaptor |
| Location | 8q24.22 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | SLA1, SLAP-1, hSLAP, SLAP |
| Ensembl gene | ENSG00000155926 |
| Ensembl biotype | protein_coding |
| OMIM | 601099 |
| Entrez | 6503 |
Gene structure
Transcript identifiers
Ensembl transcripts: 27 — 15 protein_coding, 6 protein_coding_CDS_not_defined, 5 retained_intron, 1 nonsense_mediated_decay
ENST00000338087, ENST00000395352, ENST00000427060, ENST00000517549, ENST00000517615, ENST00000517648, ENST00000517932, ENST00000518565, ENST00000518594, ENST00000519341, ENST00000519504, ENST00000519558, ENST00000519747, ENST00000520106, ENST00000521302, ENST00000521823, ENST00000522002, ENST00000522119, ENST00000522432, ENST00000522946, ENST00000523224, ENST00000523610, ENST00000524345, ENST00000953118, ENST00000953119, ENST00000953120, ENST00000953121
RefSeq mRNA: 5 — MANE Select: NM_001045556
NM_001045556, NM_001045557, NM_001282964, NM_001282965, NM_006748
CCDS: CCDS47922, CCDS47923, CCDS6370, CCDS64977, CCDS64978
Canonical transcript exons
ENST00000338087 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001167875 | 133039998 | 133040130 |
| ENSE00001167888 | 133044984 | 133045115 |
| ENSE00001343977 | 133036728 | 133038737 |
| ENSE00001369746 | 133074853 | 133075130 |
| ENSE00002139856 | 133102553 | 133102602 |
| ENSE00003552270 | 133050816 | 133050915 |
| ENSE00003589612 | 133047830 | 133047933 |
| ENSE00003628374 | 133049902 | 133049988 |
| ENSE00003650420 | 133060100 | 133060200 |
Expression profiles
Bgee: expression breadth ubiquitous, 253 present calls, max score 99.28.
FANTOM5 (CAGE): breadth broad, TPM avg 16.3379 / max 1136.1670, expressed in 561 samples.
FANTOM5 promoters (18 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 95126 | 6.1288 | 468 |
| 95124 | 4.0440 | 448 |
| 95123 | 1.2769 | 309 |
| 95125 | 1.2298 | 346 |
| 95118 | 0.7549 | 151 |
| 95133 | 0.6798 | 23 |
| 95119 | 0.5974 | 154 |
| 95120 | 0.4508 | 149 |
| 95117 | 0.4239 | 108 |
| 95127 | 0.3688 | 193 |
Top tissues by expression
288 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cortical plate | UBERON:0005343 | 99.28 | gold quality |
| blood | UBERON:0000178 | 98.60 | gold quality |
| ganglionic eminence | UBERON:0004023 | 98.12 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 98.00 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 97.63 | gold quality |
| granulocyte | CL:0000094 | 97.07 | gold quality |
| thymus | UBERON:0002370 | 96.97 | gold quality |
| bone marrow | UBERON:0002371 | 96.77 | gold quality |
| spleen | UBERON:0002106 | 96.24 | gold quality |
| thyroid gland | UBERON:0002046 | 96.23 | gold quality |
| vermiform appendix | UBERON:0001154 | 96.21 | gold quality |
| leukocyte | CL:0000738 | 96.15 | gold quality |
| mononuclear cell | CL:0000842 | 96.03 | gold quality |
| monocyte | CL:0000576 | 96.02 | gold quality |
| lymph node | UBERON:0000029 | 95.99 | gold quality |
| bone marrow cell | CL:0002092 | 95.55 | gold quality |
| right lung | UBERON:0002167 | 95.34 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 95.15 | gold quality |
| caecum | UBERON:0001153 | 94.06 | gold quality |
| ileal mucosa | UBERON:0000331 | 93.84 | gold quality |
| lower lobe of lung | UBERON:0008949 | 92.88 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 91.54 | gold quality |
| superficial temporal artery | UBERON:0001614 | 91.29 | gold quality |
| upper lobe of lung | UBERON:0008948 | 91.28 | gold quality |
| pericardium | UBERON:0002407 | 91.27 | gold quality |
| lung | UBERON:0002048 | 90.05 | gold quality |
| periodontal ligament | UBERON:0008266 | 89.86 | gold quality |
| embryo | UBERON:0000922 | 89.36 | gold quality |
| gall bladder | UBERON:0002110 | 88.40 | gold quality |
| pylorus | UBERON:0001166 | 87.16 | gold quality |
Single-cell (SCXA)
Detected in 13 experiment(s), a significant marker in 11.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-106540 | yes | 2639.05 |
| E-HCAD-5 | yes | 70.03 |
| E-GEOD-135922 | yes | 38.57 |
| E-MTAB-10287 | yes | 32.28 |
| E-HCAD-1 | yes | 29.71 |
| E-MTAB-8410 | yes | 27.46 |
| E-MTAB-6678 | yes | 26.38 |
| E-CURD-46 | yes | 16.07 |
| E-HCAD-10 | yes | 7.28 |
| E-CURD-119 | yes | 6.50 |
| E-GEOD-70580 | no | 2426.05 |
| E-CURD-112 | no | 3.27 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AP1, HR, MYC
miRNA regulators (miRDB)
72 targeting SLA, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-433-3P | 99.98 | 69.37 | 1203 |
| HSA-MIR-1236-3P | 99.94 | 68.04 | 1695 |
| HSA-MIR-6809-3P | 99.91 | 71.45 | 3814 |
| HSA-MIR-627-3P | 99.90 | 71.42 | 3316 |
| HSA-MIR-629-3P | 99.85 | 67.99 | 1875 |
| HSA-MIR-4713-5P | 99.78 | 67.80 | 1794 |
| HSA-MIR-3156-3P | 99.76 | 66.72 | 939 |
| HSA-MIR-6764-5P | 99.75 | 67.89 | 2304 |
| HSA-MIR-3913-3P | 99.74 | 66.53 | 938 |
| HSA-MIR-4306 | 99.72 | 70.50 | 3630 |
| HSA-MIR-33A-3P | 99.70 | 70.27 | 3362 |
| HSA-MIR-3059-5P | 99.70 | 69.93 | 2491 |
| HSA-MIR-6892-3P | 99.68 | 66.40 | 1178 |
| HSA-MIR-466 | 99.67 | 70.85 | 2863 |
| HSA-MIR-6126 | 99.62 | 68.09 | 996 |
| HSA-MIR-1915-3P | 99.58 | 66.79 | 1988 |
| HSA-MIR-510-3P | 99.54 | 70.06 | 2965 |
| HSA-MIR-4441 | 99.49 | 66.56 | 3216 |
| HSA-MIR-3123 | 99.47 | 67.15 | 2693 |
Literature-anchored findings (GeneRIF, showing 7)
- The SLA molecule and its functionally relevant residues have been highly conserved throughout the evolution. (PMID:16521218)
- Although SLA is a prominent glucocorticoids response gene, it does not seem to contribute to the anti-leukemic effects of glucocorticoids. (PMID:19631983)
- These data provide evidence for src-like adaptor protein-dependent regulation of CD3 zeta-chain in the fine control of TCR signaling. (PMID:22798681)
- upon ligand stimulation SLAP stably associates with Flt3 through multiple phosphotyrosine residues in Flt3. SLAP mRNA is differentially expressed in different cancers and its expression significantly increased in patients carrying the Flt3-ITD mutation (PMID:23300935)
- Taken together the data demonstrate that SLAP negatively regulates wild-type c-Kit signaling, but not its oncogenic counterpart, indicating a possible mechanism by which the oncogenic c-Kit bypasses the normal cellular negative feedback control (PMID:24284075)
- results suggest that cytoplasm-specific transduction of the SH3 and SH2 domains of SLAP has a therapeutic potential of being an immunosuppressive reagent for the treatment of various autoimmune diseases (PMID:25800872)
- SLAP Is a Negative Regulator of FcepsilonRI Receptor-Mediated Signaling and Allergic Response. (PMID:31156621)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | sla1a | ENSDARG00000054340 |
| danio_rerio | SLA | ENSDARG00000100287 |
| mus_musculus | Sla | ENSMUSG00000022372 |
| rattus_norvegicus | Sla | ENSRNOG00000056714 |
| drosophila_melanogaster | dock | FBGN0010583 |
| caenorhabditis_elegans | WBGENE00006410 |
Paralogs (9): DAPP1 (ENSG00000070190), NCK2 (ENSG00000071051), GRAP2 (ENSG00000100351), SLA2 (ENSG00000101082), GRAP (ENSG00000154016), NCK1 (ENSG00000158092), GRB2 (ENSG00000177885), GRAPL (ENSG00000189152), SH2D5 (ENSG00000189410)
Protein
Protein identifiers
Src-like-adapter — Q13239 (reviewed: Q13239)
Alternative names: Src-like-adapter protein 1
All UniProt accessions (8): Q13239, E5RGG0, E5RH80, E5RHT2, E5RJ69, E5RJB0, E5RK29, E5RK95
UniProt curated annotations — full annotation on UniProt →
Function. Adapter protein, which negatively regulates T-cell receptor (TCR) signaling. Inhibits T-cell antigen-receptor induced activation of nuclear factor of activated T-cells. Involved in the negative regulation of positive selection and mitosis of T-cells. May act by linking signaling proteins such as ZAP70 with CBL, leading to a CBL dependent degradation of signaling proteins.
Subunit / interactions. Interacts with EPHA2, VAV1, LCP2 and PDGFRB. Homodimer. Homodimerization and interaction with phosphorylated CBL occurs via its C-terminal domain. Interacts with phosphorylated proteins ZAP70, CD3Z, SYK and LAT via its SH2 domain.
Subcellular location. Cytoplasm. Endosome.
Tissue specificity. Expressed in lung and fetal brain. Weakly expressed in heart, adult brain, placenta, liver, skeletal muscle, kidney and pancreas.
Domain organisation. The C-terminal domain is essential for the homodimerization and the interaction with CBL. While the interaction with CBL is apparently mediated via the hydrophobic region of this domain, the highly charged region is apparently required for the homodimerization.
Induction. By all-trans retinoic acid (ATRA). Induction is indirect and is mediated through other proteins.
Isoforms (5)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q13239-1 | 1 | yes |
| Q13239-2 | 2 | |
| Q13239-3 | 3 | |
| Q13239-4 | 4 | |
| Q13239-5 | 5 |
RefSeq proteins (5): NP_001039021, NP_001039022, NP_001269893, NP_001269894, NP_006739 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000980 | SH2 | Domain |
| IPR001452 | SH3_domain | Domain |
| IPR035052 | SLAP_SH2 | Domain |
| IPR035596 | SLAP_SH3 | Domain |
| IPR036028 | SH3-like_dom_sf | Homologous_superfamily |
| IPR036860 | SH2_dom_sf | Homologous_superfamily |
| IPR043539 | Grb2-like | Family |
Pfam: PF00017, PF00018
UniProt features (28 total): strand 6, mutagenesis site 5, splice variant 4, domain 2, turn 2, modified residue 2, initiator methionine 1, chain 1, sequence variant 1, sequence conflict 1, helix 1, region of interest 1, lipid moiety-binding region 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2CUD | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q13239-F1 | 75.16 | 0.47 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 253, 273, 2
Mutagenesis-validated functional residues (5):
| Position | Phenotype |
|---|---|
| 111 | strongly reduces interaction with zap70, cd3z, syk and lat. |
| 218 | abolishes interaction with cbl. does not affect dimerization; when associated with s-224 and s-229. |
| 224 | abolishes interaction with cbl. does not affect dimerization; when associated with s-218 and s-229. |
| 229 | abolishes interaction with cbl. does not affect dimerization; when associated with s-218 and s-224. |
| 237–239 | abolishes interaction with cbl. slightly affects dimerization. |
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-9706369 | Negative regulation of FLT3 |
| R-HSA-1280215 | Cytokine Signaling in Immune system |
| R-HSA-168256 | Immune System |
| R-HSA-9607240 | FLT3 Signaling |
MSigDB gene sets: 302 (showing top):
WALLACE_PROSTATE_CANCER_RACE_UP, MCLACHLAN_DENTAL_CARIES_UP, LU_IL4_SIGNALING, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, RORA1_01, MODULE_45, MODULE_64, MODULE_16, SHIPP_DLBCL_CURED_VS_FATAL_DN, MODULE_118, GNF2_ICAM3, AML_Q6, OCT1_07, MODULE_157, CLIMENT_BREAST_CANCER_COPY_NUMBER_UP
GO Biological Process (2): signal transduction (GO:0007165), regulation of MAPK cascade (GO:0043408)
GO Molecular Function (3): phosphotyrosine residue binding (GO:0001784), epidermal growth factor receptor binding (GO:0005154), protein binding (GO:0005515)
GO Cellular Component (6): nucleoplasm (GO:0005654), cytoplasm (GO:0005737), endosome (GO:0005768), cytosol (GO:0005829), plasma membrane (GO:0005886), COP9 signalosome (GO:0008180)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| FLT3 Signaling | 1 |
| Immune System | 1 |
| Cytokine Signaling in Immune system | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| MAPK cascade | 1 |
| regulation of intracellular signal transduction | 1 |
| protein phosphorylated amino acid binding | 1 |
| growth factor receptor binding | 1 |
| binding | 1 |
| nuclear lumen | 1 |
| intracellular anatomical structure | 1 |
| endomembrane system | 1 |
| cytoplasmic vesicle | 1 |
| cytoplasm | 1 |
| membrane | 1 |
| cell periphery | 1 |
| nuclear protein-containing complex | 1 |
Protein interactions and networks
STRING
1978 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SLA | SLMAP | Q14BN4 | 896 |
| SLA | NLRP2 | Q9NX02 | 846 |
| SLA | ITSN1 | Q15811 | 592 |
| SLA | EPS15 | P42566 | 587 |
| SLA | RPL13 | P26373 | 495 |
| SLA | DNM1L | O00429 | 491 |
| SLA | ACTA1 | P02568 | 481 |
| SLA | SAAL1 | Q96ER3 | 475 |
| SLA | CBL | P22681 | 455 |
| SLA | RCC1 | P18754 | 442 |
| SLA | CD8A | P01732 | 438 |
| SLA | TG | P01266 | 435 |
| SLA | CLCN1 | P35523 | 424 |
| SLA | FLT3 | P36888 | 416 |
| SLA | MYO5A | Q9Y4I1 | 401 |
IntAct
20 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| EGFR | SLA | psi-mi:“MI:0915”(physical association) | 0.690 |
| SLA | EGFR | psi-mi:“MI:0407”(direct interaction) | 0.690 |
| SLA | NCOA2 | psi-mi:“MI:0915”(physical association) | 0.590 |
| SLA | PDGFRB | psi-mi:“MI:0914”(association) | 0.460 |
| SLA | ERBB2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| SLA | GAB1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ECE1 | SLA | psi-mi:“MI:0915”(physical association) | 0.370 |
| ALK | SLA | psi-mi:“MI:0915”(physical association) | 0.370 |
| SLA | GSK3B | psi-mi:“MI:0915”(physical association) | 0.370 |
| CUL4A | HAX1 | psi-mi:“MI:0914”(association) | 0.350 |
| SLA | Ptpn6 | psi-mi:“MI:0914”(association) | 0.350 |
| SLA | TIMM50 | psi-mi:“MI:0915”(physical association) | 0.000 |
| PAFAH1B2 | SLA | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (41): SLA (Two-hybrid), SLA (PCA), SLA (Affinity Capture-MS), SLA (Two-hybrid), NCOA2 (Affinity Capture-MS), SLA (Two-hybrid), SLA (Two-hybrid), SLA (Two-hybrid), QARS (Two-hybrid), MYO15B (Two-hybrid), ZAP70 (Affinity Capture-Western), CD247 (Affinity Capture-Western), SYK (Affinity Capture-Western), LAT (Affinity Capture-Western), SLA (Reconstituted Complex)
ESM2 similar proteins: B2RZ59, F1LYQ8, F1P065, F8VPU2, O14796, O35324, O60880, O75791, O88890, O88900, O89100, O94887, P0CE43, P46108, P46109, P47941, P52735, P59622, P87378, P97369, Q03160, Q04929, Q06AA1, Q13239, Q13322, Q14449, Q15080, Q1RMW5, Q2I6J1, Q3ZBB1, Q45HK4, Q5ICW4, Q5RAB8, Q5U2U2, Q60760, Q60898, Q60992, Q63768, Q64010, Q6P4S2
Diamond homologs: A0JNB0, A1A5H8, A1Y2K1, A6QLK6, F1LM93, F1RDG9, O01498, O43639, O45539, O55033, O75791, O75886, O88811, O89100, O93436, P00519, P00520, P00522, P00527, P00528, P03949, P06239, P06240, P06241, P07947, P07948, P08103, P08631, P09324, P09769, P10447, P10569, P10936, P13406, P14234, P16277, P17713, P25911, P27446, P27447
SIGNOR signaling
5 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| SLA | “down-regulates quantity by destabilization” | EPHA2 | binding |
| KIT | “down-regulates activity” | SLA | phosphorylation |
| SLA | “down-regulates quantity by destabilization” | KIT | ubiquitination |
Disease & clinical
Clinical variants and AI predictions
ClinVar
150 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 6 |
| Likely pathogenic | 2 |
| Uncertain significance | 67 |
| Likely benign | 46 |
| Benign | 7 |
Top pathogenic / likely-pathogenic (8)
| Variant ID | HGVS | Classification |
|---|---|---|
| 2710858 | NM_003235.5(TG):c.7342C>T (p.Gln2448Ter) | Pathogenic |
| 2847414 | NM_003235.5(TG):c.7277del (p.His2426fs) | Pathogenic |
| 2967695 | NM_003235.5(TG):c.7332_7333del (p.Met2444fs) | Pathogenic |
| 3633212 | NM_003235.5(TG):c.7276_7277insT (p.His2426fs) | Pathogenic |
| 3693483 | NM_003235.5(TG):c.7326C>A (p.Cys2442Ter) | Pathogenic |
| 3896375 | NM_003235.5(TG):c.7502G>A (p.Trp2501Ter) | Pathogenic |
| 3618494 | NM_003235.5(TG):c.7572+2T>C | Likely pathogenic |
| 3672100 | NM_003235.5(TG):c.7404+1G>A | Likely pathogenic |
SpliceAI
2909 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 8:133038746:C:CT | acceptor_gain | 1.0000 |
| 8:133039995:CAC:C | donor_loss | 1.0000 |
| 8:133039996:A:AC | donor_gain | 1.0000 |
| 8:133039997:C:CC | donor_gain | 1.0000 |
| 8:133039997:C:CT | donor_loss | 1.0000 |
| 8:133040126:CACCT:C | acceptor_gain | 1.0000 |
| 8:133040129:CT:C | acceptor_gain | 1.0000 |
| 8:133040131:C:CC | acceptor_gain | 1.0000 |
| 8:133047828:A:AC | donor_gain | 1.0000 |
| 8:133047828:AC:A | donor_gain | 1.0000 |
| 8:133047829:C:CC | donor_gain | 1.0000 |
| 8:133047829:C:CG | donor_loss | 1.0000 |
| 8:133047829:CC:C | donor_gain | 1.0000 |
| 8:133047829:CCT:C | donor_gain | 1.0000 |
| 8:133047829:CCTTT:C | donor_gain | 1.0000 |
| 8:133047929:GCCAG:G | acceptor_gain | 1.0000 |
| 8:133047930:CCAG:C | acceptor_gain | 1.0000 |
| 8:133047930:CCAGC:C | acceptor_gain | 1.0000 |
| 8:133047931:CAG:C | acceptor_gain | 1.0000 |
| 8:133047931:CAGC:C | acceptor_gain | 1.0000 |
| 8:133047932:AG:A | acceptor_gain | 1.0000 |
| 8:133047932:AGCT:A | acceptor_loss | 1.0000 |
| 8:133047933:GC:G | acceptor_loss | 1.0000 |
| 8:133047934:C:CC | acceptor_gain | 1.0000 |
| 8:133047934:CTGG:C | acceptor_loss | 1.0000 |
| 8:133049896:ACTC:A | donor_loss | 1.0000 |
| 8:133049897:CTC:C | donor_loss | 1.0000 |
| 8:133049898:TCA:T | donor_loss | 1.0000 |
| 8:133049899:CACC:C | donor_loss | 1.0000 |
| 8:133049900:A:AC | donor_gain | 1.0000 |
AlphaMissense
1788 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 8:133040103:A:T | L171H | 1.000 |
| 8:133045001:A:G | L156P | 1.000 |
| 8:133045018:G:C | F150L | 1.000 |
| 8:133045018:G:T | F150L | 1.000 |
| 8:133045019:A:G | F150S | 1.000 |
| 8:133045020:A:G | F150L | 1.000 |
| 8:133045037:A:T | I144N | 1.000 |
| 8:133045067:A:C | I134S | 1.000 |
| 8:133045067:A:G | I134T | 1.000 |
| 8:133045067:A:T | I134N | 1.000 |
| 8:133045074:A:C | Y132D | 1.000 |
| 8:133045075:A:C | H131Q | 1.000 |
| 8:133045075:A:T | H131Q | 1.000 |
| 8:133045077:G:C | H131D | 1.000 |
| 8:133045103:A:G | L122P | 1.000 |
| 8:133047849:T:A | R111S | 1.000 |
| 8:133047849:T:G | R111S | 1.000 |
| 8:133047850:C:A | R111I | 1.000 |
| 8:133047850:C:G | R111T | 1.000 |
| 8:133047851:T:C | R111G | 1.000 |
| 8:133047853:A:T | I110N | 1.000 |
| 8:133047858:G:C | F108L | 1.000 |
| 8:133047858:G:T | F108L | 1.000 |
| 8:133047859:A:G | F108S | 1.000 |
| 8:133047860:A:G | F108L | 1.000 |
| 8:133047865:C:T | G106D | 1.000 |
| 8:133047889:A:G | L98P | 1.000 |
| 8:133047892:A:G | L97P | 1.000 |
| 8:133047928:A:G | L85P | 1.000 |
| 8:133047932:A:G | W84R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000116559 (8:133039572 T>G), RS1000123975 (8:133063607 G>A), RS1000196456 (8:133086657 A>G), RS1000232383 (8:133060902 T>C), RS1000263 (8:133097532 C>G), RS1000264 (8:133098034 A>G), RS1000307885 (8:133086449 ATTC>A), RS1000357482 (8:133065771 T>C), RS1000358340 (8:133075360 CTTCT>C), RS1000419361 (8:133042542 C>T), RS1000444694 (8:133092192 C>G), RS1000453793 (8:133042895 T>C), RS1000543172 (8:133086989 A>C), RS1000547849 (8:133077021 T>C), RS1000642053 (8:133080938 A>G)
Disease associations
OMIM: gene MIM:601099 | disease phenotypes: MIM:274700, MIM:608175
GenCC curated gene-disease
Mondo (2): thyroid dyshormonogenesis 3 (MONDO:0010135), autoimmune thyroid disease, susceptibility to, 3 (MONDO:0011982)
Orphanet (1): Familial thyroid dyshormonogenesis (Orphanet:95716)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C562769 | Thyroid Dyshormonogenesis 3 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
36 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Tretinoin | affects cotreatment, decreases reaction, increases expression | 5 |
| Benzo(a)pyrene | affects methylation, decreases expression | 3 |
| Estradiol | affects cotreatment, increases expression | 2 |
| Valproic Acid | affects expression, increases methylation | 2 |
| 3-((6-(2-methoxyphenyl)pyrimidin-4-yl)amino)phenyl)methane sulfonamide | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | increases expression | 1 |
| pyrimidin-2-one beta-ribofuranoside | increases expression | 1 |
| butyraldehyde | increases expression | 1 |
| pyrrolidine dithiocarbamic acid | increases expression, affects cotreatment, decreases reaction | 1 |
| bathocuproine sulfonate | affects cotreatment, decreases reaction, increases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | decreases expression, affects cotreatment | 1 |
| tamibarotene | increases expression | 1 |
| tebuconazole | increases expression | 1 |
| cylindrospermopsin | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| nickel acetate | affects expression | 1 |
| 2,2’,4,4’,5-brominated diphenyl ether | decreases expression | 1 |
| abrine | increases expression | 1 |
| Decitabine | increases expression | 1 |
| Arsenic Trioxide | affects cotreatment, increases expression | 1 |
| Norethindrone Acetate | affects cotreatment, increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Calcitriol | decreases expression | 1 |
| Cisplatin | increases expression | 1 |
| Cycloheximide | decreases reaction, increases expression | 1 |
| Cytarabine | increases expression | 1 |
| Dexamethasone | increases expression | 1 |
| Lipopolysaccharides | affects cotreatment, decreases expression | 1 |
| Nickel | increases expression | 1 |
Clinical trials (associated diseases)
1 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03655223 | Not specified | ENROLLING_BY_INVITATION | Early Check: Expanded Screening in Newborns |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autoimmune thyroid disease, susceptibility to, 3, thyroid dyshormonogenesis 3