SLC10A2

gene
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Also known as NTCP2IBAT

Summary

SLC10A2 (solute carrier family 10 member 2, HGNC:10906) is a protein-coding gene on chromosome 13q33.1, encoding Ileal sodium/bile acid cotransporter (Q12908). Plays a critical role in the sodium-dependent reabsorption of bile acids from the lumen of the small intestine.

This gene encodes a sodium/bile acid cotransporter. This transporter is the primary mechanism for uptake of intestinal bile acids by apical cells in the distal ileum. Bile acids are the catabolic product of cholesterol metabolism, so this protein is also critical for cholesterol homeostasis. Mutations in this gene cause primary bile acid malabsorption (PBAM); muatations in this gene may also be associated with other diseases of the liver and intestines, such as familial hypertriglyceridemia (FHTG).

Source: NCBI Gene 6555 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): bile acid malabsorption, primary, 1 (Limited, GenCC)
  • GWAS associations: 10
  • Clinical variants (ClinVar): 420 total — 1 pathogenic
  • Phenotypes (HPO): 8
  • Druggable target: yes — 9 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_000452

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:10906
Approved symbolSLC10A2
Namesolute carrier family 10 member 2
Location13q33.1
Locus typegene with protein product
StatusApproved
AliasesNTCP2, IBAT
Ensembl geneENSG00000125255
Ensembl biotypeprotein_coding
OMIM601295
Entrez6555

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 protein_coding

ENST00000245312

RefSeq mRNA: 1 — MANE Select: NM_000452 NM_000452

CCDS: CCDS9506

Canonical transcript exons

ENST00000245312 — 6 exons

ExonStartEnd
ENSE00000854028103065873103066417
ENSE00000854029103058264103058382
ENSE00000854031103051257103051432
ENSE00000854032103049289103049446
ENSE00000854033103043998103046260
ENSE00000998725103052620103052708

Expression profiles

Bgee: expression breadth broad, 49 present calls, max score 97.75.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0648 / max 71.0685, expressed in 14 samples.

FANTOM5 promoters (5 alternative TSS)

Promoter IDTPM avgSamples expressed
1381140.02687
1381160.01743
1381170.01194
1381130.00451
1381150.00421

Top tissues by expression

267 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
ileal mucosaUBERON:000033197.75gold quality
jejunal mucosaUBERON:000039986.92gold quality
duodenumUBERON:000211486.57gold quality
small intestine Peyer’s patchUBERON:000345485.86gold quality
nephron tubuleUBERON:000123185.68gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047385.28silver quality
small intestineUBERON:000210882.26gold quality
kidney epitheliumUBERON:000481981.21gold quality
renal glomerulusUBERON:000007477.89gold quality
metanephric glomerulusUBERON:000473677.79gold quality
kidneyUBERON:000211366.97gold quality
cortex of kidneyUBERON:000122566.91gold quality
jejunumUBERON:000211566.10gold quality
adult mammalian kidneyUBERON:000008265.34gold quality
metanephrosUBERON:000008162.54gold quality
type B pancreatic cellCL:000016962.31gold quality
cranial nerve IIUBERON:000094157.72silver quality
gall bladderUBERON:000211056.75gold quality
pancreatic ductal cellCL:000207956.47silver quality
sural nerveUBERON:001548855.33gold quality
primordial germ cell in gonadCL:0000670 ∩ UBERON:000099155.25silver quality
amniotic fluidUBERON:000017354.63silver quality
endothelial cellCL:000011554.53gold quality
epithelial cell of pancreasCL:000008352.51gold quality
renal medullaUBERON:000036252.43silver quality
deltoidUBERON:000147652.14gold quality
quadriceps femorisUBERON:000137750.48gold quality
frontal poleUBERON:000279550.41gold quality
middle frontal gyrusUBERON:000270250.30gold quality
paraflocculusUBERON:000535150.18gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-ANND-3yes3.27

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): AP1, CDX2, DNMT1, FOS, HNF1A, JUN, NR0B2, NR1H4, NR3C1, NR5A2, PPARA, RARA, TCFL5

miRNA regulators (miRDB)

101 targeting SLC10A2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-3163100.0077.238605
HSA-MIR-5011-5P100.0083.465820
HSA-MIR-4455100.0065.481587
HSA-MIR-1277-5P100.0073.955056
HSA-MIR-6833-3P100.0070.633197
HSA-MIR-190A-3P100.0080.355520
HSA-MIR-5692A100.0074.406850
HSA-MIR-1252-5P100.0069.802774
HSA-MIR-4768-5P100.0069.492861
HSA-MIR-607799.9968.042299
HSA-MIR-513B-5P99.9969.962150
HSA-MIR-548C-3P99.9974.017587
HSA-MIR-450099.9972.722367
HSA-MIR-223-3P99.9970.141140
HSA-MIR-453499.9966.581907
HSA-MIR-34A-5P99.9971.211784
HSA-MIR-449A99.9971.051776
HSA-MIR-569699.9872.364487
HSA-MIR-520D-5P99.9873.344883
HSA-MIR-524-5P99.9873.434882
HSA-MIR-302C-5P99.9772.563642
HSA-MIR-314899.9775.066478
HSA-MIR-60799.9773.625593
HSA-MIR-34C-5P99.9770.451577
HSA-MIR-449B-5P99.9770.261580
HSA-MIR-1250-3P99.9670.044038
HSA-MIR-4760-3P99.9370.502385
HSA-MIR-338-5P99.9272.342951
HSA-MIR-7-1-3P99.9171.534384
HSA-MIR-7-2-3P99.9171.404394

Literature-anchored findings (GeneRIF, showing 40)

  • There was no apparent correlation between the SLC10A2 polymorphisms and bile acid production or turnover in familial hypertriglyceridemia patients. (PMID:11742882)
  • reglation of the ASBT gene by PPARalpha (PMID:12055195)
  • role in transport of bile acids in multidrug-resistance-protein 3-overexpressing cells (PMID:12220224)
  • Positively regulated by retinoic acid. Bile acids induce negative feedback regulation of human ASBT via farnesoid X-receptor-mediated, short heterodimer partner-dependent effect upon retinoic acid receptor/retinoid X receptor activation of ASBT. (PMID:15239098)
  • SLC10A2 expression is regulated by the ubiquitin-proteasome pathway (PMID:15304498)
  • On the basis of seven transmembrane topology, a three-dimensional model of ASBT is built. The model agrees with available data for pathological mutation P290S because the mutant model after in silico mutagenesis loses the ability to bind bile acids. (PMID:15350125)
  • BIle acid-methanethiosulfonyl can serve as novel and powerful tools to probe the role of endogenous as well as engineered Cys residues in the bile acid binding region(s) of hASBT. (PMID:15952798)
  • current data provide the first evidence that I-BABP is functionally associated with FXR and IBAT in the nucleus and on the membrane, respectively, stimulating FXR transcriptional activity and the conjugated bile acid uptake mediated by IBAT in the ileum (PMID:16230354)
  • ASBT and ILBP protein were 48% and 67% lower in normal weight gallstone carriers than in controls (P < 0.05); similar differences were found for mRNA expression levels. (PMID:16237211)
  • this study determines a 7TM topology for hASBT and refutes the previously proposed 9TM model (PMID:16411770)
  • hASBT-mediated prodrug targeting is discussed, including QSAR, in vitro models for hASBT assay, and the current progress in utilizing hASBT as a drug delivery target. (PMID:16749855)
  • Although the presence of a single negative charge was not essential for interaction with hASBT, monoanionic conjugates are favored for hASBT-mediated transport compared to cationic and zwitterionic conjugates. (PMID:16749860)
  • These data suggest that transmembrane segment 7 (TM7) plays a dominant role in the hASBT translocation process. (PMID:16899538)
  • One or more constituents of human serum stimulate ASBT gene expression largely via the down-stream AP-1 response element. (PMID:17942302)
  • Extracellular loop 3 amino acids are essential for human ASBT activity as primary substrate interaction points using long-range electrostatic attractive forces. (PMID:18028035)
  • cholesterol content of lipid rafts is essential for the optimal activity of ASBT (PMID:18063707)
  • involvement of transmembrane domain 4 (TM4) of hASBT in forming the putative translocation pathway. TM4 has distinct helical face that contains residues critical for transport & conformational stability. (PMID:18311924)
  • analysis of how conserved aspartic acid residues lining the extracellular loop 1 of sodium-coupled bile acid transporter ASBT interact with Na+ and 7alpha-OH moieties on the ligand cholestane skeleton (PMID:18508772)
  • Common variants of the SLC10A2 gene are not associated with sporadic or familial colorectal cancer (PMID:18644122)
  • dysfunction, and impaired adaptive responses of several of the bile acid transporters, e.g. BSEP and ASBT, results in liver and intestinal disease (PMID:18668439)
  • Cyclic AMP-mediated phosphoinositide-3-kinase{ISBT)-independent activation of Rab4 facilitates Ntcp translocation in a hepatoma cell line. (PMID:18688880)
  • haplotype carriers with the minor allele exhibited significant reduced ileal SLC10A2 expression on mRNA levels (2.6-fold, P = 0.0009) and protein levels (2.4-fold, P = 0.0157) (PMID:19184108)
  • Integration of results for transmembrane (TM)3 and TM7 cysteine mutants suggests a putative scenario to describe substrate entry and exit into the ASBT permeation pathway during translocation mechanisms. (PMID:19653651)
  • SLC10A2 is a novel susceptibility gene for cholelithiasis in humans (PMID:19823678)
  • Data demonstrate a novel role of lipid rafts in the modulation of ASBT function by the dietary component EGCG, which may underlie the hypocholesterolemic effects of green tea. (PMID:20056894)
  • Results show that bile acid conjugates are potential prolonged release prodrugs with binding affinity for ASBT. (PMID:20600720)
  • These data confirm that bile acids and upregulation of ASBT play a crucial role in NEC pathogenesis and suggest that inhibition of ASBT could be utilized as a therapeutic modality against this disease. (PMID:20616306)
  • the essential role of ASBT in the uptake of bile acids, by which the enterohepatic recirculation of bile acids is maintained (PMID:21341987)
  • The beneficial effect of rifampicin in cholestasis is associated with an increase in DME expression involved in toxic, bile acid and cholesterol metabolism, as well as a reduction in the bile acid importing system in hepatocytes. (PMID:21526375)
  • data demonstrate that TM1 plays a pivotal role in ASBT function and stability, thereby providing further insight in its dynamic transport mechanism (PMID:21646357)
  • Presence of multiple functionally relevant variants in SLC10A2 that may influence bile acid homeostasis and physiology. (PMID:21649730)
  • The human ASBT promoter was activated transcriptionally by CDX1 and CDX2. (PMID:22016432)
  • There was no significant association of rs9514089 with gallstone risk, serum lipid parameters and BMI in the Sorbs and in the meta-analysis of all three cohorts. [meta-analysis] (PMID:22093174)
  • This study provided novel evidence for the alterations in the activity of ASBT by enteropathogenic Escherichia coli infection. (PMID:22403793)
  • ASBT evolved from the earliest vertebrates by gaining affinity for modern bile salts while retaining affinity for older bile salts (PMID:22669917)
  • Transmembrane domain II of the human bile acid transporter SLC10A2 coordinates sodium translocation. (PMID:24045943)
  • It was conclude that regulation of ASBT expression by resveratrol (RSV) may have clinical relevance with regard to the observed cholesterol-lowering effects of RSV. (PMID:24498857)
  • Data indicate that the lipid flippase (ATP8B1)-transmembrane protein 30A (CDC50A) heterodimer is essential for the apical localization of sodium-dependent bile acid transporter (SLC10A2/ASBT) in Caco-2 cells. (PMID:25239307)
  • The p.Ser267Phe NTCP variant is significantly associated with resistance to chronic hepatitis B and a lower incidence of acute-on-chronic liver failure. Our results support that NTCP is a cellular receptor for HBV in human infection (PMID:25418280)
  • Results unravel novel roles for N-glycosylation of ASBT and suggest that high levels of glucose alter the composition of the glycan and may contribute to the increase in ASBT function in diabetes mellitus. (PMID:25855079)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
danio_rerioslc10a2ENSDARG00000014916
mus_musculusSlc10a2ENSMUSG00000023073
rattus_norvegicusSlc10a2ENSRNOG00000037753

Paralogs (5): SLC10A1 (ENSG00000100652), SLC10A3 (ENSG00000126903), SLC10A4 (ENSG00000145248), SLC10A6 (ENSG00000145283), SLC10A5 (ENSG00000253598)

Protein

Protein identifiers

Ileal sodium/bile acid cotransporterQ12908 (reviewed: Q12908)

Alternative names: Apical sodium-dependent bile acid transporter, Ileal Na(+)/bile acid cotransporter, Ileal sodium-dependent bile acid transporter, Na(+)-dependent ileal bile acid transporter, Sodium/taurocholate cotransporting polypeptide, ileal, Solute carrier family 10 member 2

All UniProt accessions (1): Q12908

UniProt curated annotations — full annotation on UniProt →

Function. Plays a critical role in the sodium-dependent reabsorption of bile acids from the lumen of the small intestine. Transports various bile acids, unconjugated or conjugated, such as cholate and taurocholate. Also responsible for bile acid transport in the renal proximal tubules, a salvage mechanism that helps conserve bile acids. Works collaboratively with the Na(+)-taurocholate cotransporting polypeptide (NTCP), the organic solute transporter (OST), and the bile salt export pump (BSEP), to ensure efficacious biological recycling of bile acids during enterohepatic circulation.

Subunit / interactions. Monomer and homodimer.

Subcellular location. Membrane.

Tissue specificity. Mainly expressed in ileum and kidney, lower expression in cecum.

Disease relevance. Bile acid malabsorption, primary, 1 (PBAM1) [MIM:613291] An autosomal recessive intestinal disorder associated with chronic watery diarrhea, excess fecal bile acids, steatorrhea and interruption of the enterohepatic circulation of bile acids. The disease is caused by variants affecting the gene represented in this entry.

Similarity. Belongs to the bile acid:sodium symporter (BASS) (TC 2.A.28) family.

RefSeq proteins (1): NP_000443* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR002657BilAc:Na_symport/Acr3Family
IPR004710Bilac:Na_transptFamily
IPR038770Na+/solute_symporter_sfHomologous_superfamily

Pfam: PF01758

Catalyzed reactions (Rhea), 9 shown:

  • tauroallocholate(out) + 2 Na(+)(out) = tauroallocholate(in) + 2 Na(+)(in) (RHEA:51840)
  • taurocholate(out) + 2 Na(+)(out) = taurocholate(in) + 2 Na(+)(in) (RHEA:71875)
  • cholate(out) + 2 Na(+)(out) = cholate(in) + 2 Na(+)(in) (RHEA:71911)
  • tauronorcholate(out) + 2 Na(+)(out) = tauronorcholate(in) + 2 Na(+)(in) (RHEA:71915)
  • taurochenodeoxycholate(out) + 2 Na(+)(out) = taurochenodeoxycholate(in) + 2 Na(+)(in) (RHEA:71923)
  • tauroursodeoxycholate(out) + 2 Na(+)(out) = tauroursodeoxycholate(in) + 2 Na(+)(in) (RHEA:71927)
  • glycocholate(out) + 2 Na(+)(out) = glycocholate(in) + 2 Na(+)(in) (RHEA:71935)
  • taurodeoxycholate(out) + 2 Na(+)(out) = taurodeoxycholate(in) + 2 Na(+)(in) (RHEA:72087)
  • tauro-beta-muricholate(out) + 2 Na(+)(out) = tauro-beta-muricholate(in) + 2 Na(+)(in) (RHEA:72179)

UniProt features (29 total): topological domain 8, transmembrane region 7, sequence variant 6, mutagenesis site 2, chain 1, region of interest 1, compositionally biased region 1, site 1, modified residue 1, glycosylation site 1

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q12908-F182.880.51

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (1): 328 (not glycosylated)

Post-translational modifications (1): 335

Glycosylation sites (1): 10

Mutagenesis-validated functional residues (2):

PositionPhenotype
10abolishes glycosylation.
328no effect on glycosylation.

Function

Pathways and Gene Ontology

Reactome pathways

1 pathways

IDPathway
R-HSA-159418Recycling of bile acids and salts

MSigDB gene sets: 142 (showing top): MODULE_162, GOBP_MONOATOMIC_CATION_TRANSPORT, GOBP_ORGANIC_ACID_TRANSPORT, GOBP_ORGANIC_HYDROXY_COMPOUND_TRANSPORT, MODULE_368, GATA6_01, BROWNE_HCMV_INFECTION_14HR_DN, GOBP_ORGANIC_ANION_TRANSPORT, MODULE_71, GOBP_BILE_ACID_AND_BILE_SALT_TRANSPORT, TGANTCA_AP1_C, GOBP_MONOCARBOXYLIC_ACID_TRANSPORT, GOCC_APICAL_PLASMA_MEMBRANE, AACTTT_UNKNOWN, RFX1_02

GO Biological Process (6): response to bacterium (GO:0009617), bile acid and bile salt transport (GO:0015721), monoatomic ion transport (GO:0006811), sodium ion transport (GO:0006814), lipid transport (GO:0006869), transmembrane transport (GO:0055085)

GO Molecular Function (3): bile acid:sodium symporter activity (GO:0008508), protein binding (GO:0005515), symporter activity (GO:0015293)

GO Cellular Component (4): plasma membrane (GO:0005886), microvillus (GO:0005902), apical plasma membrane (GO:0016324), membrane (GO:0016020)

Reactome top-level categories

Rollup of top-1 pathways:

CategoryPathways
Bile acid and bile salt metabolism1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
transport3
response to other organism1
lipid transport1
monocarboxylic acid transport1
organic hydroxy compound transport1
metal ion transport1
lipid localization1
cellular process1
organic acid:sodium symporter activity1
bile acid transmembrane transporter activity1
secondary active monocarboxylate transmembrane transporter activity1
binding1
secondary active transmembrane transporter activity1
membrane1
cell periphery1
actin filament bundle1
actin-based cell projection1
apical part of cell1
plasma membrane region1
cellular anatomical structure1

Protein interactions and networks

STRING

1166 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
SLC10A2FABP6P51161916
SLC10A2NR1H4Q96RI1903
SLC10A2SLC51AQ86UW1881
SLC10A2CYP7A1P22680867
SLC10A2ATP6V0CP27449857
SLC10A2ABCB4P21439848
SLC10A2SLCO1A2P46721823
SLC10A2NR0B2Q15466819
SLC10A2SLC51BQ86UW2818
SLC10A2ABCB11O95342802
SLC10A2PPARAQ07869751
SLC10A2GPBAR1Q8TDU6732
SLC10A2CYP8B1Q9UNU6719
SLC10A2SLC5A1P13866685
SLC10A2FGF19O95750671

IntAct

35 interactions, top by confidence:

ABTypeScore
SLC10A2NRMpsi-mi:“MI:0915”(physical association)0.560
UPK1BSLC10A2psi-mi:“MI:0915”(physical association)0.560
EFNA5SLC10A2psi-mi:“MI:0915”(physical association)0.560
SLC10A2TTMPpsi-mi:“MI:0915”(physical association)0.560
SLC10A2TMEM222psi-mi:“MI:0915”(physical association)0.560
SLC10A2TEX264psi-mi:“MI:0915”(physical association)0.560
IFITM3SLC10A2psi-mi:“MI:0915”(physical association)0.560
SLC10A2CCL4L1psi-mi:“MI:0915”(physical association)0.560
SLC10A2CTXN3psi-mi:“MI:0915”(physical association)0.560
SLC10A2PSENENpsi-mi:“MI:0915”(physical association)0.560
SLC10A2CLPTM1psi-mi:“MI:0915”(physical association)0.560
SLC10A2PPIEpsi-mi:“MI:0915”(physical association)0.400
SLC10A2CLGNpsi-mi:“MI:0914”(association)0.350
SLC10A3CPDpsi-mi:“MI:0914”(association)0.350
NRMSLC10A2psi-mi:“MI:0915”(physical association)0.000
UPK1BSLC10A2psi-mi:“MI:0915”(physical association)0.000
EFNA5SLC10A2psi-mi:“MI:0915”(physical association)0.000
TTMPSLC10A2psi-mi:“MI:0915”(physical association)0.000
TEX264SLC10A2psi-mi:“MI:0915”(physical association)0.000
CCL4L1SLC10A2psi-mi:“MI:0915”(physical association)0.000
CTXN3SLC10A2psi-mi:“MI:0915”(physical association)0.000
PSENENSLC10A2psi-mi:“MI:0915”(physical association)0.000
TMEM222SLC10A2psi-mi:“MI:0915”(physical association)0.000
IFITM3SLC10A2psi-mi:“MI:0915”(physical association)0.000

BioGRID (31): PPIE (Affinity Capture-MS), SLC10A2 (Two-hybrid), SLC10A2 (Two-hybrid), NRM (Two-hybrid), IFITM3 (Two-hybrid), TEX264 (Two-hybrid), EFNA5 (Two-hybrid), TMEM222 (Two-hybrid), PSENEN (Two-hybrid), CTXN3 (Two-hybrid), CCL4L2 (Two-hybrid), CLPTM1 (Affinity Capture-MS), ACSL6 (Affinity Capture-MS), CLGN (Affinity Capture-MS), CLPTM1 (Affinity Capture-MS)

ESM2 similar proteins: A0A2K2BF92, A0A6P3HVI0, A1L1W9, A2VDL4, A4IHB9, A6QP84, B0JZE1, O35874, P49281, P49282, P53985, P53986, P53987, P53988, P70172, Q03064, Q0IHM1, Q0VA82, Q12908, Q28727, Q2XWK0, Q3KNW5, Q3MHW6, Q3U9N9, Q3UEZ8, Q495M3, Q5BKR2, Q5M7K3, Q5PT56, Q5R6B8, Q5U3U7, Q60414, Q62633, Q63344, Q6DEJ6, Q6GPQ3, Q6NT16, Q6PF45, Q6YBV0, Q70EX6

Diamond homologs: A6QP84, O08705, P09131, P26435, P70172, Q12908, Q14973, Q28727, Q3KNW5, Q3UEZ8, Q4JLT5, Q5PT55, Q5PT56, Q60414, Q62633, Q70EX6, Q7XVB3, Q96EP9, Q9CXB2, P21129, Q0V8N6, Q93YR2, B8BDK4, F4JPW1, O34524, Q1EBV7, Q5VRB2, Q650U0, Q6K739, Q8VYY4, Q8ZKL0, Q5PT54, Q8RXE8

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

420 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic1
Likely pathogenic0
Uncertain significance270
Likely benign99
Benign14

Top pathogenic / likely-pathogenic (1)

Variant IDHGVSClassification
8242NM_000452.3(SLC10A2):c.584_585+1invPathogenic

SpliceAI

565 predictions. Top by Δscore:

VariantEffectΔscore
13:103046256:ATAAA:Aacceptor_gain1.0000
13:103046257:TAAA:Tacceptor_gain1.0000
13:103046258:AAA:Aacceptor_gain1.0000
13:103046258:AAAC:Aacceptor_loss1.0000
13:103046259:AA:Aacceptor_gain1.0000
13:103046260:ACTAG:Aacceptor_loss1.0000
13:103046261:C:CCacceptor_gain1.0000
13:103046261:C:Tacceptor_loss1.0000
13:103047940:AGG:Adonor_gain1.0000
13:103047957:T:TAdonor_gain1.0000
13:103049282:T:TAdonor_gain1.0000
13:103049287:A:ACdonor_gain1.0000
13:103049287:ACAT:Adonor_gain1.0000
13:103049288:C:CCdonor_gain1.0000
13:103049288:CAT:Cdonor_gain1.0000
13:103049288:CATC:Cdonor_gain1.0000
13:103049290:T:TAdonor_gain1.0000
13:103049447:C:CAacceptor_loss1.0000
13:103049448:T:Aacceptor_loss1.0000
13:103051429:CAAT:Cacceptor_gain1.0000
13:103049283:CCTTA:Cdonor_loss0.9900
13:103049284:CTT:Cdonor_loss0.9900
13:103049285:TTA:Tdonor_loss0.9900
13:103049286:T:TCdonor_loss0.9900
13:103049287:ACATC:Adonor_gain0.9900
13:103049288:CA:Cdonor_gain0.9900
13:103049288:CATCC:Cdonor_gain0.9900
13:103049353:G:GTdonor_gain0.9900
13:103049442:GGCAC:Gacceptor_gain0.9900
13:103049444:CAC:Cacceptor_gain0.9900

AlphaMissense

2279 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
13:103052669:C:TG179E0.999
13:103049410:G:CN266K0.998
13:103049410:G:TN266K0.998
13:103051297:C:AG241W0.998
13:103052681:G:CP175R0.998
13:103052681:G:TP175H0.998
13:103066022:A:CF76L0.998
13:103066022:A:TF76L0.998
13:103066024:A:GF76L0.998
13:103049420:C:TG263E0.997
13:103049421:C:AG263W0.997
13:103051330:C:GG230R0.997
13:103051330:C:TG230R0.997
13:103052699:A:GL169P0.997
13:103065876:A:GL125P0.997
13:103065915:G:AS112F0.997
13:103065932:G:CC106W0.997
13:103066030:A:GC74R0.997
13:103066102:C:GG50R0.997
13:103066102:C:TG50R0.997
13:103049374:G:CF278L0.996
13:103049374:G:TF278L0.996
13:103049376:A:GF278L0.996
13:103049398:A:CC270W0.996
13:103049435:A:TV258D0.996
13:103051296:C:TG241E0.996
13:103051297:C:GG241R0.996
13:103051297:C:TG241R0.996
13:103051308:C:TG237D0.996
13:103051416:C:TG201D0.996

dbSNP variants (sampled 300 via entrez): RS1000040762 (13:103058607 C>T), RS1000277399 (13:103050631 A>C), RS1000343391 (13:103061812 A>C), RS1000375212 (13:103054595 C>A,T), RS1000491346 (13:103054779 T>C), RS1000564277 (13:103049744 C>T), RS1000582070 (13:103050447 C>T), RS1000627387 (13:103044739 G>C), RS1000649649 (13:103059649 G>A), RS1000702808 (13:103065539 C>T), RS1001000579 (13:103059941 G>A), RS1001014772 (13:103045257 C>T), RS1001249775 (13:103064674 T>C), RS1001360084 (13:103060763 T>G), RS1001675457 (13:103043646 T>C)

Disease associations

OMIM: gene MIM:601295 | disease phenotypes: MIM:613291

GenCC curated gene-disease

DiseaseClassificationInheritance
bile acid malabsorption, primary, 1LimitedAutosomal recessive

Mondo (1): bile acid malabsorption, primary, 1 (MONDO:0013214)

Orphanet (1): NON RARE IN EUROPE: Primary bile acid malabsorption (Orphanet:449262)

HPO phenotypes

8 total (8 of 8 shown, HPO-id order):

HPOTerm
HP:0000007Autosomal recessive inheritance
HP:0001508Failure to thrive
HP:0001510Growth delay
HP:0002028Chronic diarrhea
HP:0002570Steatorrhea
HP:0002630Fat malabsorption
HP:0003623Neonatal onset
HP:0034043Increased fecal bile acid

GWAS associations

10 associations (top):

StudyTraitp-value
GCST001179_12Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)4.000000e-07
GCST001672_4Esophageal cancer (alcohol interaction)5.000000e-08
GCST002337_9Amyotrophic lateral sclerosis (sporadic)6.000000e-06
GCST003815_99Late-onset Alzheimer’s disease5.000000e-08
GCST004068_41Venous thromboembolism adjusted for sickle cell variant rs77121243-T5.000000e-06
GCST006295_3Response to quetiapine in schizophrenia1.000000e-06
GCST007209_3Gallstone disease2.000000e-12
GCST009391_1253Metabolite levels2.000000e-06
GCST009568_2epithelial cell adhesion molecule levels1.000000e-15
GCST012020_143Serum metabolite levels4.000000e-12

EFO canonical traits (4, from GWAS)

EFO IDTrait name
EFO:0006809docosapentaenoic acid measurement
EFO:1001870late-onset Alzheimers disease
EFO:0004761uric acid measurement
EFO:0010574epithelial cell adhesion molecule measurement

MeSH disease descriptors (1)

DescriptorNameTree numbers
C567652Bile Acid Malabsorption, Primary (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL2778 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

9 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 290,852 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL1551URSODIOL422,553
CHEMBL160CYCLOSPORINE4168,247
CHEMBL17879MARALIXIBAT CHLORIDE4120
CHEMBL240597CHENODIOL424,403
CHEMBL272427TAURURSODIOL44,753
CHEMBL363392MARALIXIBAT4205
CHEMBL406393DEOXYCHOLIC ACID463,215
CHEMBL2387408LINERIXIBAT3373
CHEMBL412272TAURODEOXYCHOLIC ACID26,983

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB clinical annotations

3 annotations.

VariantTypeLevelDrugsPhenotypes
rs2301159Toxicity3docetaxel;thalidomideProstatic Neoplasms
rs7319981Toxicity4anthracyclines and related substancesNeoplasms
rs9514091Toxicity4anthracyclines and related substancesNeoplasms

PharmGKB variants

3 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs2301159SLC10A231.501docetaxel;thalidomide
rs7319981SLC10A24-1.251anthracyclines and related substances
rs9514091SLC10A24-1.501anthracyclines and related substances

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: transporter — SLC10 family of sodium-bile acid co-transporters

Most potent curated ligand interactions (5 total), top 5:

LigandActionAffinityParameter
odevixibatInhibition9.8pIC50
maralixibatInhibition9.55pIC50
elobixibatInhibition8.92pIC50
SC-435Inhibition8.82pIC50
264W94Inhibition7.32pIC50

Binding affinities (BindingDB)

82 measured of 83 human assays (83 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
(2S,3R)-2-[[(2R)-2-[[2-[(3,3-dibutyl-7-methylsulfanyl-1,1-dioxo-5-phenyl-2,4-dihydro-1lambda6,2,5-benzothiadiazepin-8-yl)oxy]acetyl]amino]-2-(4-hydroxyphenyl)acetyl]amino]-3-hydroxybutanoic acidIC500.11 nMUS-9694018: IBAT inhibitors for the treatment of liver disease
(2S)-2-[[(2R)-2-[[2-[(3,3-dibutyl-7-methylsulfanyl-1,1-dioxo-5-phenyl-2,4-dihydro-1lambda6,2,5-benzothiadiazepin-8-yl)oxy]acetyl]amino]-2-(4-hydroxyphenyl)acetyl]amino]-3-methylbutanoic acidIC500.13 nMUS-9694018: IBAT inhibitors for the treatment of liver disease
(2S)-2-[[(2R)-2-[[2-[(3-butyl-7-methylsulfanyl-1,1-dioxo-5-phenyl-3-propyl-2,4-dihydro-1lambda6,5-benzothiazepin-8-yl)oxy]acetyl]amino]-2-(4-hydroxyphenyl)acetyl]amino]butanoic acidIC500.15 nMUS-9694018: IBAT inhibitors for the treatment of liver disease
OdevixibatIC500.16 nMUS-9694018: IBAT inhibitors for the treatment of liver disease
(2S)-2-[[(2R)-2-[[2-[(3,3-dibutyl-7-methylsulfanyl-1,1-dioxo-5-phenyl-2,4-dihydro-1lambda6,2,5-benzothiadiazepin-8-yl)oxy]acetyl]amino]-2-phenylacetyl]amino]butanoic acidIC500.18 nMUS-9694018: IBAT inhibitors for the treatment of liver disease
(2S)-2-[[(2R)-2-[[2-[(3,3-dibutyl-7-methylsulfanyl-1,1-dioxo-5-phenyl-2,4-dihydro-1lambda6,2,5-benzothiadiazepin-8-yl)oxy]acetyl]amino]-2-phenylacetyl]amino]propanoic acidIC500.2 nMUS-9694018: IBAT inhibitors for the treatment of liver disease
(2S)-2-[[(2R)-2-[[2-[(3,3-dibutyl-7-methylsulfanyl-1,1-dioxo-5-phenyl-2,4-dihydro-1lambda6,2,5-benzothiadiazepin-8-yl)oxy]acetyl]amino]-2-(4-hydroxyphenyl)acetyl]amino]propanoic acidIC500.3 nMUS-9694018: IBAT inhibitors for the treatment of liver disease
(2R)-2-[[(2R)-2-[[2-[(3,3-dibutyl-7-methylsulfanyl-1,1-dioxo-5-phenyl-2,4-dihydro-1lambda6,2,5-benzothiadiazepin-8-yl)oxy]acetyl]amino]-2-phenylacetyl]amino]-3-methylsulfanylpropanoic acidIC500.35 nMUS-9694018: IBAT inhibitors for the treatment of liver disease
(2S)-2-[[(2R)-2-[[2-[(3,3-dibutyl-7-methylsulfanyl-1,1-dioxo-5-phenyl-2,4-dihydro-1lambda6,2,5-benzothiadiazepin-8-yl)oxy]acetyl]amino]-2-phenylacetyl]amino]-3-methylbutanoic acidIC500.36 nMUS-9694018: IBAT inhibitors for the treatment of liver disease
2-[[(2R)-2-[[2-[(3,3-dibutyl-7-methylsulfanyl-1,1-dioxo-5-phenyl-2,4-dihydro-1lambda6,2,5-benzothiadiazepin-8-yl)oxy]acetyl]amino]-2-phenylacetyl]amino]acetic acidIC500.45 nMUS-9694018: IBAT inhibitors for the treatment of liver disease
2-[[(3R,5R)-3-butyl-7-(dimethylamino)-3-ethyl-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]methylamino]acetic acidIC501 nMUS-9040518: Chemical compounds
2-[[(2R)-2-[[2-[(3,3-dibutyl-7-methylsulfanyl-1,1-dioxo-5-phenyl-2,4-dihydro-1lambda6,5-benzothiazepin-8-yl)oxy]acetyl]amino]-2-phenylacetyl]amino]acetic acidIC501.2 nMUS-9694018: IBAT inhibitors for the treatment of liver disease
BDBM50434848IC502 nMUS-9040518: Chemical compounds
2-[[(3R,5R)-3-butyl-3-ethyl-4-hydroxy-7-methoxy-1,1-dioxo-5-phenyl-2,5-dihydro-1lambda6,4-benzothiazepin-8-yl]methylamino]acetic acidIC502 nMUS-9040518: Chemical compounds
2-[[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepine-8-carbonyl]amino]ethanesulfonic acidIC502 nMUS-9040518: Chemical compounds
(E)-3-[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]prop-2-enoic acidIC503 nMUS-9040518: Chemical compounds
[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]methanesulfonic acidIC504 nMUS-9040518: Chemical compounds
3-[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]propane-1-sulfonic acidIC504 nMUS-9040518: Chemical compounds
2-[[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]methylamino]acetic acidIC506 nMUS-9040518: Chemical compounds
2-[[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]methylamino]-2-oxoacetic acidIC506 nMUS-9040518: Chemical compounds
2-[[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]methylamino]-2-oxoethanesulfonic acidIC509 nMUS-9040518: Chemical compounds
[[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepine-8-carbonyl]amino]methanesulfonic acidIC5011 nMUS-9040518: Chemical compounds
(2S)-2-[[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]methylamino]-4-methylsulfonylbutanoic acidIC5013 nMUS-9040518: Chemical compounds
3-[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]propanoic acidIC5017 nMUS-9040518: Chemical compounds
2-[[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]methyl-hydroxyamino]acetic acidIC5017 nMUS-9040518: Chemical compounds
3-[[(3R,5R)-3-butyl-7-(dimethylamino)-3-ethyl-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]methylamino]pentanedioic acidIC5019 nMUS-9040518: Chemical compounds
3-[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]-N-methylsulfonylpropanamideIC5020 nMUS-9040518: Chemical compounds
2-[(3,3-dibutyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl)methylamino]acetic acidIC5021 nMUS-9040518: Chemical compounds
[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]methylphosphonic acidIC5023 nMUS-9040518: Chemical compounds
3-[[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepine-8-carbonyl]amino]-2,2-dimethylpropanoic acidIC5032 nMUS-9040518: Chemical compounds
2-[[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]methyl-methylamino]acetic acidIC5041 nMUS-9040518: Chemical compounds
BDBM50434858IC5043 nMUS-9040518: Chemical compounds
(2S)-2-[[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]methylamino]propanoic acidIC5047 nMUS-9040518: Chemical compounds
3-[[(3R,5R)-3-butyl-3-ethyl-4-hydroxy-7-methoxy-1,1-dioxo-5-phenyl-2,5-dihydro-1lambda6,4-benzothiazepin-8-yl]methylamino]pentanedioic acidIC5051 nMUS-9040518: Chemical compounds
3-[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]propylphosphonic acidIC5051 nMUS-9040518: Chemical compounds
2-[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]ethylphosphonic acidIC5051 nMUS-9040518: Chemical compounds
(3,3-dibutyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl)methylphosphonic acidIC5052 nMUS-9040518: Chemical compounds
2-[[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]methylamino]ethanesulfonic acidIC5054 nMUS-9040518: Chemical compounds
(2R)-2-[[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]methylamino]propanoic acidIC5055 nMUS-9040518: Chemical compounds
(2S)-2-[[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]methylamino]-3-hydroxypropanoic acidIC5059 nMUS-9040518: Chemical compounds
(2R)-2-amino-3-[[(2R)-2-[[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]methylamino]-2-carboxyethyl]disulfanyl]propanoic acidIC5067 nMUS-9040518: Chemical compounds
3-[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]-N-hydroxypropanamideIC5068 nMUS-9040518: Chemical compounds
(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepine-8-carboxamideIC5073 nMUS-9040518: Chemical compounds
4-[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]butanamideIC5073 nMUS-9040518: Chemical compounds
BDBM50434845IC50100 nMUS-9040518: Chemical compounds
1-[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]ethanoneIC50100 nMUS-9040518: Chemical compounds
[(3R,5R)-3-butyl-3-ethyl-4-hydroxy-7-methoxy-1,1-dioxo-5-phenyl-2,5-dihydro-1lambda6,4-benzothiazepin-8-yl]methylphosphonic acidIC50124 nMUS-9040518: Chemical compounds
3-[[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]methylamino]-3-oxopropane-1-sulfonic acidIC50128 nMUS-9040518: Chemical compounds
[(E)-2-[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]ethenyl]phosphonic acidIC50131 nMUS-9040518: Chemical compounds
2-[[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]methyl-(carboxymethyl)amino]acetic acidIC50145 nMUS-9040518: Chemical compounds

ChEMBL bioactivities

300 potent at pChembl≥5 of 346 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
9.55IC500.28nMMARALIXIBAT
9.52IC500.3nMCHEMBL370103
9.30IC500.5nMCHEMBL364676
9.12IC500.76nMCHEMBL555246
9.12IC500.75nMCHEMBL194685
9.00IC501nMCHEMBL372080
9.00IC501nMCHEMBL195012
9.00IC501nMCHEMBL3658914
8.80IC501.6nMCHEMBL332974
8.70IC502nMCHEMBL2387421
8.70IC502nMCHEMBL2387520
8.70IC502nMCHEMBL197508
8.70IC502nMCHEMBL540126
8.70IC502nMCHEMBL555022
8.70IC502nMCHEMBL372324
8.70IC502nMCHEMBL193847
8.70IC502nMCHEMBL372275
8.70IC502nMCHEMBL3959109
8.70IC502nMCHEMBL3658886
8.70IC502nMCHEMBL3658901
8.66IC502.2nMCHEMBL194461
8.64IC502.3nMCHEMBL196032
8.62IC502.4nMCHEMBL3956446
8.52IC503nMCHEMBL555024
8.52IC503nMCHEMBL611748
8.52IC503nMCHEMBL3658876
8.52IC503nMCHEMBL332973
8.46IC503.5nMCHEMBL3907170
8.44IC503.6nMCHEMBL196459
8.43IC503.7nMCHEMBL426152
8.40IC504nMCHEMBL2387397
8.40IC504nMCHEMBL2387522
8.40IC504nMCHEMBL2387521
8.40IC504nMCHEMBL2387527
8.40IC504nMCHEMBL194420
8.40IC504nMCHEMBL380601
8.40IC504nMCHEMBL196029
8.40IC504nMCHEMBL193439
8.40IC504nMCHEMBL3658874
8.36IC504.4nMCHEMBL3945133
8.35IC504.5nMCHEMBL197311
8.30IC505nMCHEMBL196475
8.30IC505nMCHEMBL194792
8.30IC505nMCHEMBL197639
8.24IC505.7nMCHEMBL540128
8.22IC506nMCHEMBL2387510
8.22IC506nMCHEMBL196280
8.22IC506nMCHEMBL3658888
8.22IC506nMCHEMBL3658910
8.22IC506nMCHEMBL122498

PubChem BioAssay actives

220 with measured affinity, of 337 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
2-[[2-[3-[(4R,5R)-3,3-dibutyl-7-(dimethylamino)-4-hydroxy-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-5-yl]anilino]acetyl]amino]acetic acid255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0003uM
Maralixibat1954580: Inhibition of human IBATic500.0003uM
(4R,5R)-5-[4-[5-(4-aza-1-azoniabicyclo[2.2.2]octan-1-yl)pentoxy]phenyl]-3,3-dibutyl-7-(dimethylamino)-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0005uM
[5-[3-[(4R,5R)-3,3-dibutyl-7-(dimethylamino)-4-hydroxy-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-5-yl]anilino]-5-oxopentyl]-triethylazanium bromide255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0008uM
(4R,5R)-3,3-dibutyl-7-(dimethylamino)-5-[4-[(1-methylpyridin-1-ium-4-yl)methoxy]phenyl]-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0008uM
(4R,5R)-3,3-dibutyl-7-(dimethylamino)-1,1-dioxo-5-[4-[[4-(pyridin-1-ium-1-ylmethyl)phenyl]methoxy]phenyl]-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0010uM
(4R,5R)-5-[4-[4-(4-aza-1-azoniabicyclo[2.2.2]octan-1-yl)butoxy]phenyl]-3,3-dibutyl-7-(dimethylamino)-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0010uM
[5-[3-[(4R,5R)-3,3-dibutyl-7-(dimethylamino)-4-hydroxy-1,1-dioxo-4,5-dihydro-2H-1lambda6,2-benzothiazepin-5-yl]anilino]-5-oxopentyl]-triethylazanium;2,2,2-trifluoroacetate38743: In vitro inhibitory activity against uptake of [14C]taurocholate in baby hamster kidney cells transfected with cDNA from human Apical Sodium-Codependent Bile Acid Transporteric500.0016uM
(4R,5R)-3,3-dibutyl-7-(dimethylamino)-9-methoxy-5-(4-methoxyphenyl)-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255078: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in Baby hamster cells expressing human IBATic500.0020uM
5-[4-[(4R,5R)-3,3-dibutyl-7-(dimethylamino)-4-hydroxy-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-5-yl]phenoxy]pentyl-triethylazanium bromide255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0020uM
5-[3-[(4R,5R)-3,3-dibutyl-7-(dimethylamino)-4-hydroxy-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-5-yl]phenoxy]pentyl-triethylazanium bromide255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0020uM
4-[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]butanoic acid750716: Inhibition of human ASBT expressed in HEK293 cells assessed as inhibition of [3H]-taurocholate uptake after 90 mins by scintillation counting analysisic500.0020uM
2-[[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepine-8-carbonyl]amino]ethanesulfonic acid750716: Inhibition of human ASBT expressed in HEK293 cells assessed as inhibition of [3H]-taurocholate uptake after 90 mins by scintillation counting analysisic500.0020uM
(4R,5R)-3,3-dibutyl-7-(dimethylamino)-5-[3-[(1-methylpyridin-1-ium-4-yl)amino]phenyl]-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0020uM
(4R,5R)-5-(3-aminophenyl)-3,3-dibutyl-7-(dimethylamino)-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0020uM
2-[carboxymethyl-[[4-[[4-[(4R,5R)-3,3-dibutyl-7-(dimethylamino)-4-hydroxy-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-5-yl]phenoxy]methyl]phenyl]methyl]amino]acetic acid255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0020uM
(4R,5R)-3,3-dibutyl-7-(dimethylamino)-5-(4-hydroxyphenyl)-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0022uM
2-[carboxymethyl-[5-[4-[(4R,5R)-3,3-dibutyl-7-(dimethylamino)-4-hydroxy-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-5-yl]phenoxy]pentyl]amino]acetic acid255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0023uM
(4R,5R)-3,3-dibutyl-7-(dimethylamino)-5-[3-fluoro-4-[2-[2-[2-(4,8,11-trimethyl-1,4,8,11-tetrazacyclotetradec-1-yl)ethoxy]ethoxy]ethoxy]phenyl]-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0030uM
2-[2-[2-[4-[(4R,5R)-3,3-dibutyl-7-(dimethylamino)-4-hydroxy-1,1-dioxo-4,5-dihydro-2H-1lambda6,2-benzothiazepin-5-yl]phenoxy]ethoxy]ethoxy]ethyl-triethylazanium iodide38743: In vitro inhibitory activity against uptake of [14C]taurocholate in baby hamster kidney cells transfected with cDNA from human Apical Sodium-Codependent Bile Acid Transporteric500.0030uM
2-[2-[2-[4-[(4R,5R)-3,3-dibutyl-7-(dimethylamino)-4-hydroxy-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-5-yl]phenoxy]ethoxy]ethoxy]ethyl-triethylazanium bromide255078: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in Baby hamster cells expressing human IBATic500.0030uM
(4R,5R)-3,3-dibutyl-7-(dimethylamino)-5-(3-fluoro-4-methoxyphenyl)-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0036uM
[3-[(4R,5R)-3,3-dibutyl-7-(dimethylamino)-4-hydroxy-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-5-yl]phenyl]methanesulfonic acid255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0037uM
2-[carboxymethyl-[[6-[[4-[(4R,5R)-3,3-dibutyl-7-(dimethylamino)-4-hydroxy-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-5-yl]phenoxy]methyl]-2-pyridinyl]methyl]amino]acetic acid255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0040uM
2-[2-[2-[4-[(4R,5R)-3,3-dibutyl-7-(dimethylamino)-4-hydroxy-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-5-yl]phenoxy]ethoxy]ethoxy]ethyl-trimethylazanium255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0040uM
(4R,5R)-5-[4-[2-[2-[2-(4-aza-1-azoniabicyclo[2.2.2]octan-1-yl)ethoxy]ethoxy]ethoxy]phenyl]-3,3-dibutyl-7-(dimethylamino)-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0040uM
2-[[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]methylamino]acetic acid750716: Inhibition of human ASBT expressed in HEK293 cells assessed as inhibition of [3H]-taurocholate uptake after 90 mins by scintillation counting analysisic500.0040uM
[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]methanesulfonic acid750716: Inhibition of human ASBT expressed in HEK293 cells assessed as inhibition of [3H]-taurocholate uptake after 90 mins by scintillation counting analysisic500.0040uM
2-[[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]oxy]ethanesulfonic acid750716: Inhibition of human ASBT expressed in HEK293 cells assessed as inhibition of [3H]-taurocholate uptake after 90 mins by scintillation counting analysisic500.0040uM
3-[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]propane-1-sulfonic acid750716: Inhibition of human ASBT expressed in HEK293 cells assessed as inhibition of [3H]-taurocholate uptake after 90 mins by scintillation counting analysisic500.0040uM
(4R,5R)-5-[4-[3-(4-aza-1-azoniabicyclo[2.2.2]octan-1-yl)propoxy]phenyl]-3,3-dibutyl-7-(dimethylamino)-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0040uM
(4R,5R)-3,3-dibutyl-7-(dimethylamino)-5-[3-(hydroxymethyl)phenyl]-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0045uM
(4R,5R)-3,3-dibutyl-7-(dimethylamino)-1,1-dioxo-5-thiophen-3-yl-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0050uM
(4R,5S)-3,3-dibutyl-7-(dimethylamino)-1,1-dioxo-5-pyridin-2-yl-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0050uM
(3S,4R,5R)-3-butyl-7-(dimethylamino)-3-ethyl-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255078: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in Baby hamster cells expressing human IBATic500.0050uM
2-[2-[4-[(4R,5R)-3,3-dibutyl-7-(dimethylamino)-4-hydroxy-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-5-yl]phenoxy]ethoxy]ethyl-triethylazanium bromide255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0057uM
(4R,5R)-3,3-dibutyl-7-(dimethylamino)-5-[4-[(1-ethylpyridin-1-ium-4-yl)methoxy]phenyl]-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0060uM
(4R,5R)-5-(3-aminophenyl)-3,3-dibutyl-7-(dimethylamino)-1,1-dioxo-4,5-dihydro-2H-1lambda6,2-benzothiazepin-4-ol38743: In vitro inhibitory activity against uptake of [14C]taurocholate in baby hamster kidney cells transfected with cDNA from human Apical Sodium-Codependent Bile Acid Transporteric500.0060uM
2-[[(3R,5R)-3-butyl-3-ethyl-7-methoxy-1,1-dioxo-5-phenyl-4,5-dihydro-2H-1lambda6,4-benzothiazepin-8-yl]methylamino]-2-oxoacetic acid750716: Inhibition of human ASBT expressed in HEK293 cells assessed as inhibition of [3H]-taurocholate uptake after 90 mins by scintillation counting analysisic500.0060uM
(4R,5R)-3,3-dibutyl-7-(dimethylamino)-5-(4-methoxyphenyl)-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0068uM
methyl 3-[(4R,5R)-3,3-dibutyl-7-(dimethylamino)-4-hydroxy-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-5-yl]benzoate255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0070uM
2-[3-[(4R,5R)-3,3-dibutyl-7-(dimethylamino)-4-hydroxy-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-5-yl]phenoxy]ethyl-triethylazanium bromide255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0070uM
(4R,5R)-3,3-dibutyl-7-(dimethylamino)-5-(3-hydroxyphenyl)-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0073uM
(4R,5R)-3,3-dibutyl-7-(dimethylamino)-1,1-dioxo-5-pyridin-3-yl-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0075uM
(4R,5R)-3,3-dibutyl-7-(dimethylamino)-1,1-dioxo-5-[3-(pyridin-1-ium-1-ylmethyl)phenyl]-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0075uM
(4R,5R)-3,3-dibutyl-7-(dimethylamino)-1,1-dioxo-5-pyridin-4-yl-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0080uM
(4R,5R)-3,3-dibutyl-7-(dimethylamino)-5-(4-hydroxyphenyl)-1,1-dioxo-4,5-dihydro-2H-1lambda6,2-benzothiazepin-4-ol38743: In vitro inhibitory activity against uptake of [14C]taurocholate in baby hamster kidney cells transfected with cDNA from human Apical Sodium-Codependent Bile Acid Transporteric500.0080uM
(4R,5R)-5-[4-[2-[2-(4-aza-1-azoniabicyclo[2.2.2]octan-1-yl)ethoxy]ethoxy]phenyl]-3,3-dibutyl-7-(dimethylamino)-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0085uM
5-[4-[(4R,5R)-3,3-dibutyl-7-(dimethylamino)-4-hydroxy-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-5-yl]phenoxy]pentanoic acid255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0085uM
(4R,5R)-5-[4-[2-[2-[2-[bis(2-hydroxyethyl)amino]ethoxy]ethoxy]ethoxy]phenyl]-3,3-dibutyl-7-(dimethylamino)-1,1-dioxo-4,5-dihydro-2H-1lambda6-benzothiepin-4-ol255086: In vitro inhibition of ASBT mediated uptake of [14C]taurocholate (5 uM) in baby hamster cells expressing human IBATic500.0090uM

CTD chemical–gene interactions

34 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
deoxynivalenoldecreases expression, decreases reaction2
Benzo(a)pyreneaffects methylation, increases expression2
Chenodeoxycholic Aciddecreases reaction, increases transport, increases uptake2
Taurocholic Acidincreases uptake, decreases reaction, increases transport2
betulinaffects reaction, increases uptake1
perfluorooctanoic acidaffects methylation1
glycoursodeoxycholic aciddecreases reaction, increases uptake1
ursodoxicoltaurineincreases uptake, decreases reaction1
cholylsarcosineincreases uptake, decreases reaction1
lactacystindecreases expression, decreases reaction1
benzyloxycarbonylleucyl-leucyl-leucine aldehydedecreases expression, decreases reaction1
perfluorooctane sulfonic acidincreases transport1
SB 203580decreases expression, decreases reaction1
2-palmitoylglycerolincreases expression1
GW 4064decreases expression, decreases reaction1
LDN 57444decreases expression, decreases reaction1
Resveratroldecreases expression, decreases reaction, decreases activity1
Troglitazonedecreases reaction, increases uptake1
Betulinic Acidaffects reaction, increases uptake1
Bile Acids and Saltsaffects transport1
Calcitriolincreases expression1
Deoxycholic Acidincreases uptake, decreases reaction1
Erythrosinedecreases reaction, increases uptake1
Glycochenodeoxycholic Aciddecreases reaction, increases uptake1
Glycocholic Acidincreases uptake, decreases reaction1
Glycodeoxycholic Aciddecreases reaction, increases uptake1
Indocyanine Greenincreases uptake1
Sodiumdecreases reaction, increases uptake1
Sulfobromophthaleindecreases reaction, increases uptake1
Taurochenodeoxycholic Acidincreases uptake, decreases reaction1

ChEMBL screening assays

47 unique, capped per target: 28 binding, 19 functional

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1177270BindingInhibition of human ASBT expressed in MDCK cells assessed as inhibition of [3H]taurocholic acid uptake after 10 mins by liquid scintillation countingMolecular switch controlling the binding of anionic bile acid conjugates to human apical sodium-dependent bile acid transporter. — J Med Chem
CHEMBL2075351FunctionalTP_TRANSPORTER: uptake in ASBT-expressing HEK293 cellsIdentification of a region of the ileal-type sodium/bile acid cotransporter interacting with a competitive bile acid transport inhibitor. — Biochemistry

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.