SLC10A6
gene geneOn this page
Also known as SOAT
Summary
SLC10A6 (solute carrier family 10 member 6, HGNC:30603) is a protein-coding gene on chromosome 4q21.3, encoding Sodium-dependent organic anion transporter (Q3KNW5). Transports sulfoconjugated steroid hormones from the extracellular compartment into the cytosol in a sodium-dependent manner without hydrolysis.
Predicted to enable bile acid:sodium symporter activity. Predicted to be involved in bile acid and bile salt transport. Predicted to be located in plasma membrane.
Source: NCBI Gene 345274 — RefSeq curated summary.
At a glance
- GWAS associations: 3
- Clinical variants (ClinVar): 56 total
- Druggable target: yes
- MANE Select transcript:
NM_197965
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:30603 |
| Approved symbol | SLC10A6 |
| Name | solute carrier family 10 member 6 |
| Location | 4q21.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | SOAT |
| Ensembl gene | ENSG00000145283 |
| Ensembl biotype | protein_coding |
| OMIM | 613366 |
| Entrez | 345274 |
Gene structure
Transcript identifiers
Ensembl transcripts: 2 — 1 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000273905, ENST00000505535
RefSeq mRNA: 1 — MANE Select: NM_197965
NM_197965
CCDS: CCDS3614
Canonical transcript exons
ENST00000273905 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000969767 | 86827993 | 86828168 |
| ENSE00001076784 | 86848739 | 86849384 |
| ENSE00001150015 | 86825420 | 86825577 |
| ENSE00001325051 | 86823468 | 86823902 |
| ENSE00003627586 | 86833306 | 86833424 |
| ENSE00003666355 | 86831792 | 86831880 |
Expression profiles
Bgee: expression breadth ubiquitous, 109 present calls, max score 82.03.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2199 / max 24.5561, expressed in 92 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 52988 | 0.0818 | 50 |
| 52985 | 0.0430 | 18 |
| 52986 | 0.0395 | 15 |
| 52987 | 0.0286 | 14 |
| 52984 | 0.0239 | 9 |
| 52983 | 0.0030 | 2 |
Top tissues by expression
122 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| skin of abdomen | UBERON:0001416 | 82.03 | gold quality |
| zone of skin | UBERON:0000014 | 81.50 | gold quality |
| skin of leg | UBERON:0001511 | 80.91 | gold quality |
| esophagus mucosa | UBERON:0002469 | 75.59 | gold quality |
| calcaneal tendon | UBERON:0003701 | 74.62 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 73.80 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 71.79 | gold quality |
| adipose tissue | UBERON:0001013 | 71.55 | gold quality |
| omental fat pad | UBERON:0010414 | 70.98 | gold quality |
| vagina | UBERON:0000996 | 70.04 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 66.37 | gold quality |
| esophagus | UBERON:0001043 | 65.98 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 64.07 | gold quality |
| left testis | UBERON:0004533 | 63.71 | gold quality |
| testis | UBERON:0000473 | 62.95 | gold quality |
| ectocervix | UBERON:0012249 | 62.17 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 61.79 | gold quality |
| islet of Langerhans | UBERON:0000006 | 61.35 | gold quality |
| tibial nerve | UBERON:0001323 | 61.31 | gold quality |
| right testis | UBERON:0004534 | 61.19 | gold quality |
| gall bladder | UBERON:0002110 | 60.82 | gold quality |
| muscle tissue | UBERON:0002385 | 60.74 | gold quality |
| uterine cervix | UBERON:0000002 | 60.67 | gold quality |
| gastrocnemius | UBERON:0001388 | 59.73 | gold quality |
| muscle of leg | UBERON:0001383 | 59.67 | gold quality |
| tonsil | UBERON:0002372 | 59.41 | gold quality |
| urinary bladder | UBERON:0001255 | 58.49 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 58.00 | gold quality |
| minor salivary gland | UBERON:0001830 | 57.88 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 56.70 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 3.11 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
11 targeting SLC10A6, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-515-5P | 99.92 | 69.82 | 2343 |
| HSA-MIR-519E-5P | 99.92 | 69.62 | 2358 |
| HSA-MIR-345-3P | 99.89 | 70.23 | 1421 |
| HSA-MIR-670-5P | 99.67 | 69.94 | 1565 |
| HSA-MIR-519D-5P | 99.41 | 69.30 | 2057 |
| HSA-MIR-361-3P | 99.19 | 66.45 | 1381 |
| HSA-MIR-181A-2-3P | 98.91 | 67.60 | 1168 |
| HSA-MIR-3190-5P | 98.87 | 64.89 | 1345 |
| HSA-MIR-7113-3P | 98.75 | 65.71 | 1120 |
| HSA-MIR-193A-3P | 98.59 | 66.36 | 769 |
| HSA-MIR-193B-3P | 98.59 | 66.62 | 748 |
Literature-anchored findings (GeneRIF, showing 3)
- SOAT genetic variants L44P, Q75R, P107L, G109S, S112F, N113K, S133F, G241D, G263E, G294R, and Y308N showed no transport activity for dehydroepiandrosterone sulfate at all. In the case of P107L, G241D, G263E, and Y308N, this was most likely due to significantly reduced expression in the plasma membrane. (PMID:28893621)
- SOAT-L204F polymorphism was found in men with normal spermatogenesis and with hypospermatogenesisSOAT-L204F polymorphism showed impaired membrane expression.The SOAT-L204F polymorphism showed reduced transport activity for dehydroepiandrosterone sulfate. (PMID:28951225)
- SOAT substrates from the group of sulfated steroids are characterized by a planar and lipophilic steroid backbone in trans-trans-trans conformation of the rings and a negatively charged mono-sulfate group at positions 3’ or 17’ with flexibility for alpha- or beta- orientation. Furthermore, 5alpha-reduction, 16alpha-hydroxylation, and 17alpha-hydroxylation are acceptable for SOAT substrate recognition, whereas addition … (PMID:28951227)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Slc10a6 | ENSMUSG00000029321 |
| rattus_norvegicus | Slc10a6 | ENSRNOG00000002057 |
Paralogs (5): SLC10A1 (ENSG00000100652), SLC10A2 (ENSG00000125255), SLC10A3 (ENSG00000126903), SLC10A4 (ENSG00000145248), SLC10A5 (ENSG00000253598)
Protein
Protein identifiers
Sodium-dependent organic anion transporter — Q3KNW5 (reviewed: Q3KNW5)
Alternative names: Solute carrier family 10 member 6
All UniProt accessions (1): Q3KNW5
UniProt curated annotations — full annotation on UniProt →
Function. Transports sulfoconjugated steroid hormones from the extracellular compartment into the cytosol in a sodium-dependent manner without hydrolysis. Steroid sulfate hormones are commonly considered to be biologically inactive metabolites, that may be activated by steroid sulfatases into free steroids. May play an important role by delivering sulfoconjugated steroids to specific target cells in reproductive organs. May play a role transporting the estriol precursor 16alpha-hydroxydehydroepiandrosterone 3-sulfate (16a-OH-DHEAS) at the fetal blood vessel endothelium. Can also transport other sulfoconjugated molecules such as taurolithocholic acid-3-sulfate and sulfoconjugated pyrenes.
Subcellular location. Membrane.
Tissue specificity. Highly expressed in testis, placenta and pancreas. Moderately expressed in heart, lung and mammary gland. Weakly expressed in brain, colon, kidney, liver, ovary, prostate, small intestine, spleen and thymus.
Post-translational modifications. Glycosylated.
Miscellaneous. In humans, 3-beta-sulfooxy-androst-5-en-17-one (DHEAS) is the most abundant circulating steroid sulfate in the human body, it is mainly synthesized from adrenal glands and gonads, whereas rats and mice have low circulating concentrations of DHEAS in the periphery as they can only produce DHEAS in their gonads.
Similarity. Belongs to the bile acid:sodium symporter (BASS) (TC 2.A.28) family.
RefSeq proteins (1): NP_932069* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002657 | BilAc:Na_symport/Acr3 | Family |
| IPR004710 | Bilac:Na_transpt | Family |
| IPR038770 | Na+/solute_symporter_sf | Homologous_superfamily |
Pfam: PF01758
Catalyzed reactions (Rhea), 12 shown:
- estrone 3-sulfate(out) + 2 Na(+)(out) = estrone 3-sulfate(in) + 2 Na(+)(in) (RHEA:71083)
- 17beta-estradiol 3-sulfate(out) + 2 Na(+)(out) = 17beta-estradiol 3-sulfate(in) + 2 Na(+)(in) (RHEA:71087)
- dehydroepiandrosterone 3-sulfate(out) + 2 Na(+)(out) = dehydroepiandrosterone 3-sulfate(in) + 2 Na(+)(in) (RHEA:71091)
- pregnenolone sulfate(out) + 2 Na(+)(out) = pregnenolone sulfate(in) + 2 Na(+)(in) (RHEA:71095)
- androst-5-ene-diol 3-sulfate(out) + 2 Na(+)(out) = androst-5-ene-diol 3-sulfate(in) + 2 Na(+)(in) (RHEA:71099)
- taurolithocholate 3-sulfate(out) + 2 Na(+)(out) = taurolithocholate 3-sulfate(in) + 2 Na(+)(in) (RHEA:71275)
- androsterone 3alpha-sulfate(out) + 2 Na(+)(out) = androsterone 3alpha-sulfate(in) + 2 Na(+)(in) (RHEA:71351)
- 5alpha-dihydrotestosterone sulfate(out) + 2 Na(+)(out) = 5alpha-dihydrotestosterone sulfate(in) + 2 Na(+)(in) (RHEA:71355)
- 17beta-estradiol 17-sulfate(out) + 2 Na(+)(out) = 17beta-estradiol 17-sulfate(in) + 2 Na(+)(in) (RHEA:71359)
- 17alpha-hydroxypregnenolone 3-sulfate(out) + 2 Na(+)(out) = 17alpha-hydroxypregnenolone 3-sulfate(in) + 2 Na(+)(in) (RHEA:71363)
- epiandrosterone 3-sulfate(out) + 2 Na(+)(out) = epiandrosterone 3-sulfate(in) + 2 Na(+)(in) (RHEA:71367)
- epitestosterone 17-sulfate(out) + 2 Na(+)(out) = epitestosterone 17-sulfate(in) + 2 Na(+)(in) (RHEA:71371)
UniProt features (24 total): topological domain 10, transmembrane region 9, glycosylation site 2, sequence variant 2, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q3KNW5-F1 | 77.94 | 0.48 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Glycosylation sites (2): 4, 157
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-9958517 | SLC-mediated bile acid transport |
| R-HSA-425366 | |
| R-HSA-382551 | Transport of small molecules |
| R-HSA-425407 | SLC-mediated transmembrane transport |
MSigDB gene sets: 75 (showing top):
GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_UP, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GOBP_MONOATOMIC_CATION_TRANSPORT, GOBP_ORGANIC_ACID_TRANSPORT, GOBP_ORGANIC_HYDROXY_COMPOUND_TRANSPORT, GOBP_ORGANIC_ANION_TRANSPORT, GOBP_BILE_ACID_AND_BILE_SALT_TRANSPORT, GOBP_MONOCARBOXYLIC_ACID_TRANSPORT, GOBP_LIPID_LOCALIZATION, GOBP_TRANSMEMBRANE_TRANSPORT, GOBP_SODIUM_ION_TRANSPORT, HAN_JNK_SINGALING_DN, chr4q21, GOMF_LIPID_TRANSPORTER_ACTIVITY, GOMF_METAL_ION_TRANSMEMBRANE_TRANSPORTER_ACTIVITY
GO Biological Process (6): bile acid and bile salt transport (GO:0015721), sodium-dependent organic anion transport (GO:0043251), transmembrane transport (GO:0055085), monoatomic ion transport (GO:0006811), sodium ion transport (GO:0006814), lipid transport (GO:0006869)
GO Molecular Function (4): bile acid:sodium symporter activity (GO:0008508), obsolete sodium-dependent organic anion transmembrane transporter activity (GO:0043250), protein binding (GO:0005515), symporter activity (GO:0015293)
GO Cellular Component (2): plasma membrane (GO:0005886), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| SLC-mediated transport of organic anions | 1 |
| Transport of small molecules | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| transport | 3 |
| lipid transport | 1 |
| monocarboxylic acid transport | 1 |
| organic hydroxy compound transport | 1 |
| transmembrane transport | 1 |
| cellular process | 1 |
| metal ion transport | 1 |
| lipid localization | 1 |
| organic acid:sodium symporter activity | 1 |
| bile acid transmembrane transporter activity | 1 |
| secondary active monocarboxylate transmembrane transporter activity | 1 |
| binding | 1 |
| secondary active transmembrane transporter activity | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
680 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SLC10A6 | SLC10A7 | Q0GE19 | 738 |
| SLC10A6 | SLC22A9 | Q8IVM8 | 491 |
| SLC10A6 | B3GNT5 | Q9BYG0 | 489 |
| SLC10A6 | SLC22A11 | Q9NSA0 | 465 |
| SLC10A6 | STS | P08842 | 441 |
| SLC10A6 | SLCO2B1 | O94956 | 418 |
| SLC10A6 | EMP1 | P54849 | 412 |
| SLC10A6 | TM4SF1 | P30408 | 401 |
| SLC10A6 | AMIGO2 | Q86SJ2 | 383 |
| SLC10A6 | SLCO4A1 | Q96BD0 | 379 |
| SLC10A6 | CLCF1 | Q9UBD9 | 376 |
| SLC10A6 | SLCO1A2 | P46721 | 368 |
| SLC10A6 | SLCO3A1 | Q9UIG8 | 364 |
| SLC10A6 | SLC51B | Q86UW2 | 353 |
| SLC10A6 | SLCO1C1 | Q9NYB5 | 349 |
IntAct
443 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MS4A1 | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PEX16 | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SFT2D2 | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TREX1 | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CYB5R3 | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SNORC | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HTATIP2 | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SYNGR1 | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TMEM14C | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TSPAN2 | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SLC10A6 | GPT2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| TMEM242 | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.000 |
| TMEM50B | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.000 |
| GLB1 | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.000 |
| SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.000 | |
| SLC30A3 | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.000 |
| OSMR | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.000 |
| TMEM234 | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.000 |
| GJB6 | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.000 |
| TMEM60 | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.000 |
| ITGAM | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.000 |
| SLC7A1 | SLC10A6 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (189): SLC10A6 (Two-hybrid), SLC10A6 (Two-hybrid), SLC10A6 (Two-hybrid), SLC10A6 (Two-hybrid), SLC10A6 (Two-hybrid), SLC10A6 (Two-hybrid), SLC10A6 (Two-hybrid), SLC10A6 (Two-hybrid), SLC10A6 (Two-hybrid), SLC10A6 (Two-hybrid), SLC10A6 (Two-hybrid), SLC10A6 (Two-hybrid), SLC10A6 (Two-hybrid), SLC10A6 (Two-hybrid), SLC10A6 (Two-hybrid)
ESM2 similar proteins: A0AV02, A2AWR3, A2VCW5, A4QN56, A6QP84, B2RXV4, D4A7H1, F7B113, G8XYX6, O08705, O70324, P09131, P19634, P21129, P23791, P26431, P26434, P26435, P36021, P48761, P48762, P97751, Q0V8N6, Q14973, Q28036, Q3KNW5, Q3UEZ8, Q4JLT5, Q5PT54, Q5PT56, Q5R9A7, Q61165, Q70EX6, Q71RS6, Q7Z3F1, Q8BFW9, Q8BLV3, Q8BUE1, Q8BZ00, Q8C261
Diamond homologs: A6QP84, O08705, P09131, P26435, P70172, Q12908, Q14973, Q28727, Q3KNW5, Q3UEZ8, Q4JLT5, Q5PT55, Q5PT56, Q60414, Q62633, Q70EX6, Q7XVB3, Q96EP9, Q9CXB2, P21129, Q0V8N6, Q93YR2, B8BDK4, F4JPW1, O34524, Q1EBV7, Q5VRB2, Q650U0, Q6K739, Q8VYY4, Q8ZKL0, Q5PT54, Q8RXE8
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
56 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 48 |
| Likely benign | 6 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
849 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 4:86823901:TG:T | acceptor_gain | 1.0000 |
| 4:86823903:C:CC | acceptor_gain | 1.0000 |
| 4:86831787:CTCA:C | donor_loss | 1.0000 |
| 4:86831788:TCACC:T | donor_loss | 1.0000 |
| 4:86831789:CAC:C | donor_loss | 1.0000 |
| 4:86831790:A:C | donor_loss | 1.0000 |
| 4:86831791:C:CA | donor_loss | 1.0000 |
| 4:86831878:TTC:T | acceptor_gain | 1.0000 |
| 4:86831879:TCC:T | acceptor_loss | 1.0000 |
| 4:86831881:CTAAA:C | acceptor_loss | 1.0000 |
| 4:86831882:T:C | acceptor_loss | 1.0000 |
| 4:86833346:CCAGG:C | donor_gain | 1.0000 |
| 4:86833425:C:CC | acceptor_gain | 1.0000 |
| 4:86823898:ATATG:A | acceptor_gain | 0.9900 |
| 4:86823899:TATG:T | acceptor_gain | 0.9900 |
| 4:86823900:ATG:A | acceptor_gain | 0.9900 |
| 4:86823907:G:C | acceptor_gain | 0.9900 |
| 4:86823907:G:GC | acceptor_gain | 0.9900 |
| 4:86823910:T:C | acceptor_gain | 0.9900 |
| 4:86825415:CCCA:C | donor_loss | 0.9900 |
| 4:86825416:CCAC:C | donor_loss | 0.9900 |
| 4:86825417:CACC:C | donor_loss | 0.9900 |
| 4:86825419:C:G | donor_loss | 0.9900 |
| 4:86825576:ACCTA:A | acceptor_loss | 0.9900 |
| 4:86825578:CTAC:C | acceptor_loss | 0.9900 |
| 4:86825582:C:CT | acceptor_gain | 0.9900 |
| 4:86825697:ATT:A | donor_gain | 0.9900 |
| 4:86831786:ACTC:A | donor_loss | 0.9900 |
| 4:86831881:C:CC | acceptor_gain | 0.9900 |
| 4:86833302:AGAC:A | donor_loss | 0.9900 |
AlphaMissense
2457 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 4:86825541:A:C | N266K | 0.988 |
| 4:86825541:A:T | N266K | 0.988 |
| 4:86828064:A:C | S230R | 0.986 |
| 4:86828064:A:T | S230R | 0.986 |
| 4:86828066:T:G | S230R | 0.986 |
| 4:86848806:C:G | G104R | 0.985 |
| 4:86828020:G:T | A245E | 0.983 |
| 4:86848742:A:G | L125P | 0.981 |
| 4:86831841:C:T | G179D | 0.980 |
| 4:86848888:A:C | F76L | 0.980 |
| 4:86848888:A:T | F76L | 0.980 |
| 4:86848890:A:G | F76L | 0.980 |
| 4:86833418:A:C | S128R | 0.979 |
| 4:86833418:A:T | S128R | 0.979 |
| 4:86833420:T:G | S128R | 0.979 |
| 4:86848896:A:G | C74R | 0.979 |
| 4:86828032:C:T | G241D | 0.978 |
| 4:86828044:C:T | G237D | 0.978 |
| 4:86848800:A:G | C106R | 0.978 |
| 4:86833408:A:G | C132R | 0.977 |
| 4:86848781:G:A | S112F | 0.976 |
| 4:86833392:G:T | A137D | 0.975 |
| 4:86848798:G:C | C106W | 0.974 |
| 4:86848803:A:G | C105R | 0.974 |
| 4:86848781:G:T | S112Y | 0.972 |
| 4:86848805:C:T | G104D | 0.970 |
| 4:86825531:A:G | C270R | 0.968 |
| 4:86848754:C:T | G121E | 0.968 |
| 4:86828033:C:G | G241R | 0.967 |
| 4:86848868:G:T | A83D | 0.967 |
dbSNP variants (sampled 300 via entrez): RS1000077124 (4:86836617 C>T), RS1000147274 (4:86835212 T>C), RS1000178970 (4:86834892 G>A), RS1000449434 (4:86836933 T>C,G), RS1000716360 (4:86830033 C>T), RS1000775773 (4:86842875 T>A,C), RS1000785760 (4:86828103 T>C,G), RS1000837797 (4:86849621 A>G), RS1000881301 (4:86844830 A>T), RS1000909822 (4:86824719 G>A,T), RS1000995492 (4:86844082 G>A), RS1001022835 (4:86831488 G>A,C), RS1001086612 (4:86830416 T>A), RS1001183535 (4:86833331 A>G), RS1001299993 (4:86840306 ACTT>A)
Disease associations
OMIM: gene MIM:613366 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001604_1 | Insulin-related traits | 8.000000e-06 |
| GCST003476_4 | Eyebrow thickness | 2.000000e-06 |
| GCST010002_10 | Refractive error | 7.000000e-12 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6196094 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: transporter — SLC10 family of sodium-bile acid co-transporters
ChEMBL bioactivities
19 potent at pChembl≥5 of 44 total, top 19 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.22 | IC50 | 600 | nM | CHEMBL6150871 |
| 6.10 | IC50 | 800 | nM | CHEMBL1904920 |
| 6.05 | IC50 | 900 | nM | CHEMBL6149027 |
| 5.89 | IC50 | 1300 | nM | CHEMBL6144592 |
| 5.85 | IC50 | 1400 | nM | CHEMBL6144675 |
| 5.80 | IC50 | 1600 | nM | CHEMBL6134703 |
| 5.72 | IC50 | 1900 | nM | CHEMBL6161671 |
| 5.62 | IC50 | 2400 | nM | CHEMBL6120337 |
| 5.58 | IC50 | 2600 | nM | CHEMBL6133507 |
| 5.46 | IC50 | 3500 | nM | CHEMBL6146969 |
| 5.41 | IC50 | 3900 | nM | CHEMBL6133103 |
| 5.40 | IC50 | 4000 | nM | CHEMBL1885381 |
| 5.36 | IC50 | 4400 | nM | CHEMBL6160813 |
| 5.31 | IC50 | 4900 | nM | CHEMBL6169185 |
| 5.26 | IC50 | 5500 | nM | CHEMBL6168688 |
| 5.20 | IC50 | 6300 | nM | CHEMBL6161134 |
| 5.19 | IC50 | 6400 | nM | CHEMBL6151090 |
| 5.15 | IC50 | 7100 | nM | CHEMBL1631661 |
| 5.08 | IC50 | 8300 | nM | CHEMBL6152191 |
CTD chemical–gene interactions
25 total (human), top 25 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| estrone sulfate | increases response to substance, increases uptake, increases reaction, decreases reaction, increases transport | 3 |
| Sodium | increases reaction, decreases reaction, increases uptake | 2 |
| betulin | affects reaction, increases uptake, decreases reaction | 1 |
| daidzein | increases transport, decreases reaction | 1 |
| arsenite | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| pregnenolone sulfate | increases uptake, decreases reaction | 1 |
| methylarsine oxide | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| lupenone | affects reaction, increases uptake | 1 |
| theaflavin-3,3’-digallate | affects expression | 1 |
| Troglitazone | decreases reaction, increases uptake | 1 |
| Irbesartan | decreases reaction, increases uptake | 1 |
| Betulinic Acid | affects reaction, increases uptake, decreases reaction | 1 |
| Arsenicals | increases expression | 1 |
| Benzo(a)pyrene | affects methylation, increases methylation | 1 |
| Erythrosine | decreases reaction, increases uptake | 1 |
| Sulfobromophthalein | decreases reaction, increases uptake | 1 |
| Taurocholic Acid | affects reaction, increases uptake | 1 |
| Taurolithocholic Acid | affects reaction, increases uptake, decreases reaction | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Cyclosporine | decreases reaction, increases uptake | 1 |
| Aflatoxin B1 | decreases methylation | 1 |
| Dehydroepiandrosterone Sulfate | affects reaction, increases uptake, decreases reaction | 1 |
| Losartan | decreases reaction, increases uptake | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL6094301 | Binding | Inhibition of C-terminal GFP-fused human SOAT transfected in Flp-In-T-REx-HEK293 cells assessed as inhibition of [3H]DHEAS transport preincubated for 5 mins followed by [3H]DHEAS addition and measured after 10 mins by liquid scintillation c | Structure-Activity Relationships and Target Selectivity of Phenylsulfonylamino-Benzanilide Inhibitors Based on S1647 at the SLC10 Carriers ASBT, NTCP, and SOAT. — J Med Chem |
Cellosaurus cell lines
2 cell lines: 2 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D4V6 | LS180-SLC10A6-KO-c3 | Cancer cell line | Female |
| CVCL_D4V7 | LS180-SLC10A6-KO-c8 | Cancer cell line | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.