SLC12A6
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Also known as KCC3AKCC3B
Summary
SLC12A6 (solute carrier family 12 member 6, HGNC:10914) is a protein-coding gene on chromosome 15q14, encoding Solute carrier family 12 member 6 (Q9UHW9). Mediates electroneutral potassium-chloride cotransport when activated by cell swelling.
This gene is a member of the K-Cl cotransporter (KCC) family. K-Cl cotransporters are integral membrane proteins that lower intracellular chloride concentrations below the electrochemical equilibrium potential. The proteins encoded by this gene are activated by cell swelling induced by hypotonic conditions. Alternate splicing results in multiple transcript variants encoding different isoforms. Mutations in this gene are associated with agenesis of the corpus callosum with peripheral neuropathy.
Source: NCBI Gene 9990 — RefSeq curated summary.
At a glance
- Gene–disease (curated): agenesis of the corpus callosum with peripheral neuropathy (Definitive, GenCC) — +1 more curated relationship
- GWAS associations: 1
- Clinical variants (ClinVar): 1,700 total — 63 pathogenic, 134 likely-pathogenic
- Phenotypes (HPO): 87
- MANE Select transcript:
NM_001365088
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:10914 |
| Approved symbol | SLC12A6 |
| Name | solute carrier family 12 member 6 |
| Location | 15q14 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KCC3A, KCC3B |
| Ensembl gene | ENSG00000140199 |
| Ensembl biotype | protein_coding |
| OMIM | 604878 |
| Entrez | 9990 |
Gene structure
Transcript identifiers
Ensembl transcripts: 21 — 13 protein_coding, 5 retained_intron, 3 nonsense_mediated_decay
ENST00000290209, ENST00000354181, ENST00000397702, ENST00000397707, ENST00000458406, ENST00000558589, ENST00000558667, ENST00000558950, ENST00000559076, ENST00000559236, ENST00000559441, ENST00000559484, ENST00000559523, ENST00000559664, ENST00000560023, ENST00000560164, ENST00000560611, ENST00000561080, ENST00000561120, ENST00000675289, ENST00000676379
RefSeq mRNA: 7 — MANE Select: NM_001365088
NM_001042494, NM_001042495, NM_001042496, NM_001042497, NM_001365088, NM_005135, NM_133647
CCDS: CCDS10036, CCDS42010, CCDS42011, CCDS42012, CCDS58352
Canonical transcript exons
ENST00000354181 — 26 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000941691 | 34245693 | 34245867 |
| ENSE00000941696 | 34240661 | 34240829 |
| ENSE00001108072 | 34241233 | 34241337 |
| ENSE00001108074 | 34250298 | 34250355 |
| ENSE00001108076 | 34250631 | 34250729 |
| ENSE00001108094 | 34245285 | 34245403 |
| ENSE00001210112 | 34250899 | 34251057 |
| ENSE00001210114 | 34252170 | 34252384 |
| ENSE00001210118 | 34254348 | 34254589 |
| ENSE00001210139 | 34257642 | 34257788 |
| ENSE00001687897 | 34255262 | 34255392 |
| ENSE00001785086 | 34256229 | 34256283 |
| ENSE00002555136 | 34336410 | 34336752 |
| ENSE00002562432 | 34337332 | 34337781 |
| ENSE00003491565 | 34236708 | 34236815 |
| ENSE00003508990 | 34242102 | 34242221 |
| ENSE00003511251 | 34235181 | 34235314 |
| ENSE00003522341 | 34238232 | 34238401 |
| ENSE00003567507 | 34258813 | 34258944 |
| ENSE00003571045 | 34238965 | 34239160 |
| ENSE00003575026 | 34275345 | 34275389 |
| ENSE00003635769 | 34243974 | 34244072 |
| ENSE00003643579 | 34236015 | 34236199 |
| ENSE00003660657 | 34237419 | 34237550 |
| ENSE00003680466 | 34260926 | 34261020 |
| ENSE00003894853 | 34229784 | 34233972 |
Expression profiles
Bgee: expression breadth ubiquitous, 274 present calls, max score 95.06.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 19.9371 / max 1519.8923, expressed in 1769 samples.
FANTOM5 promoters (10 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 149231 | 6.2641 | 1446 |
| 149246 | 5.3492 | 1593 |
| 149242 | 2.0321 | 538 |
| 149243 | 1.7073 | 268 |
| 149241 | 1.5676 | 305 |
| 149247 | 1.4535 | 679 |
| 149236 | 0.8352 | 177 |
| 149239 | 0.4219 | 81 |
| 149240 | 0.2223 | 53 |
| 149237 | 0.0838 | 39 |
Top tissues by expression
291 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| esophagus squamous epithelium | UBERON:0006920 | 95.06 | gold quality |
| blood | UBERON:0000178 | 94.27 | gold quality |
| secondary oocyte | CL:0000655 | 93.55 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 93.24 | gold quality |
| sperm | CL:0000019 | 92.90 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 92.42 | gold quality |
| monocyte | CL:0000576 | 92.11 | gold quality |
| oral cavity | UBERON:0000167 | 92.07 | gold quality |
| gingiva | UBERON:0001828 | 92.02 | gold quality |
| pons | UBERON:0000988 | 91.90 | gold quality |
| gingival epithelium | UBERON:0001949 | 91.85 | gold quality |
| mononuclear cell | CL:0000842 | 91.60 | gold quality |
| leukocyte | CL:0000738 | 91.56 | gold quality |
| body of tongue | UBERON:0011876 | 91.54 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 91.49 | gold quality |
| upper leg skin | UBERON:0004262 | 91.37 | gold quality |
| superior surface of tongue | UBERON:0007371 | 91.20 | gold quality |
| jejunal mucosa | UBERON:0000399 | 91.14 | gold quality |
| bone element | UBERON:0001474 | 90.93 | gold quality |
| adult organism | UBERON:0007023 | 90.88 | gold quality |
| amniotic fluid | UBERON:0000173 | 90.87 | gold quality |
| bone marrow | UBERON:0002371 | 90.82 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 90.79 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 90.70 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 90.66 | gold quality |
| visceral pleura | UBERON:0002401 | 90.64 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 90.62 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 90.54 | gold quality |
| lower lobe of lung | UBERON:0008949 | 90.38 | gold quality |
| esophagus mucosa | UBERON:0002469 | 90.36 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 7.05 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
166 targeting SLC12A6, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4713-3P | 100.00 | 65.92 | 505 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-3185 | 99.99 | 68.12 | 1959 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-4745-5P | 99.98 | 65.95 | 1028 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-6888-3P | 99.97 | 65.95 | 1170 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-146A-5P | 99.96 | 68.93 | 988 |
| HSA-MIR-146B-5P | 99.96 | 69.13 | 977 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
Literature-anchored findings (GeneRIF, showing 28)
- human osteoblasts express functional K-Cl cotransporters in their cell membrane that seem to be able to induce the indirect activation of volume-sensitive Cl- channels by KCl through an increase in the intracellular ions, water influx and cell swelling. (PMID:12637262)
- all of the CCCs examined (NKCC1, NKCC2, KCC1, KCC3, and KCC4) can promote NH4(+) translocation, presumably through binding of the ion at the K(+) site (PMID:12657561)
- KCC activation by IGF-1 plays an important role in IGF-1 signaling to promote growth and spread of gynecological cancers. (PMID:15262997)
- Not only truncating but also missense mutations of the KCC3 gene are associated with Andermann syndrome. (PMID:16606917)
- Among patients with early-stage node-negative breast cancer, disease-free survival (DFS) and overall survival (OS) curves were significantly different based on IGF-1 and KCC expression. (PMID:17133354)
- KCC3 mutations in exon 22 constitute a recurrent mutation site for hereditary motor and sensory neuropathy with agenesis of the corpus callosum (HMSN/ACC), regardless of ethnic origin. (PMID:17893295)
- KCC3 down-regulates E-cadherin/beta-catenin complex formation by inhibiting transcription of E-cadherin gene and accelerating proteosome-dependent degradation of beta-catenin protein (PMID:18006853)
- study provides evidence that the upstream SLC12A6 G/A promoter SNP is functional not only by changing the DNA primary structure but also by influencing the allelic epigenotype and consequently by influencing the chromatin organization (PMID:18536702)
- Using a yeast 2-hybrid it was discovered that the C-terminal domain of KCC3, that is lost in most hereditary motor and sensory neuropathy with agenesis of the corpus callosum-causing mutations, directly interacts with brain-specific creatine kinase. (PMID:18566107)
- Study identified two sites in KCC3 that are rapidly dephosphorylated in hypotonic conditions in cultured cells and human red blood cells in parallel with increased transport activity. (PMID:19665974)
- mutations of the KCC3 gene may result in non-syndromic childhood onset of demyelinating hereditary motor and sensory neuropathy (PMID:20020398)
- The Wnk3 protein isoforms have a similar effect on SLC12 cotransporters. NKCC1/2 and NCC were inhibited, even in hypertonicity, while KCCs were activated, even in isotonic conditions. (PMID:21613606)
- mis-trafficking of mutant protein is an important pathophysiological feature of HMSN/ACC causative KCC3 mutations. (PMID:21628467)
- KCC3 is the dominant isoform in erythrocytes, with variable expression of KCC1 and KCC4 that could result in modulation of KCC activity (PMID:21733850)
- Neuropathic features of hereditary motor and sensory neuropathy/agenesis of corpus callosum in transgenic mouse lines are predominantly due to a neuronal KCC3 deficit, while the auditory impairment is due to loss of non-neuronal KCC3 expression. (PMID:22423107)
- serine residue 96 of human KCC3 is a third site that has to be dephosphorylated for full activation of the cotransporter during hypotonicity. (PMID:24043619)
- SLC12A6 has been shown to be causative in Andermann Syndrome. (PMID:24341143)
- SPAK may promote KCC3-mediated cervix tumor aggressiveness via the NF-kappaB/p38 MAPK/MMP2 axis. (PMID:24655550)
- These results suggest that the expression of KCC3 in ESCC may affect cellular invasion and be related to a worse prognosis in patients with ESCC. (PMID:25110711)
- Neurodegenerative deficits in hereditary motor and sensory neuropathy associated with agenesis of the corpus callosum are primarily caused by an axonopathy superimposed upon abnormal development, affecting peripheral but also central nervous system axons, all ultimately because of a genetic defect in the axonal cotransporter KCC3. (PMID:27230413)
- These results suggest that the function of the peripheral nervous system depends on finely tuned, kinase-regulated KCC3 activity and implicate abnormal cell volume homeostasis as a previously unreported mechanism of axonal degeneration. (PMID:27485015)
- we present the first Mexican patients with hereditary motor and sensory neuropathy with agenesis of the corpus callosum and a novel heterozygous frameshift variant, c.2097du p or p.(Trp700Leufs*19) of the SLC12A6 gene (PMID:30038111)
- AS may also occur in the Roma population with a new mutation being found: frameshift mutation c.2604delT in the exon 20 of the SLC12A6 gene. Roma patients with probable AS should be primarily tested for this mutation. (PMID:30868738)
- SLC12A ion transporter mutations in sporadic and familial human congenital hydrocephalus. (PMID:31393094)
- De novo variants in SLC12A6 cause sporadic early-onset progressive sensorimotor neuropathy. (PMID:31439721)
- ZnR/GPR39 controls cell migration by orchestrating recruitment of KCC3 into protrusions, re-organization of actin and activation of MMP. (PMID:33465674)
- Novel heterozygous variants of SLC12A6 in Japanese families with Charcot-Marie-Tooth disease. (PMID:35733399)
- Late-onset sensory-motor axonal neuropathy, a novel SLC12A6-related phenotype. (PMID:36542484)
Cross-species orthologs
9 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | slc12a6 | ENSDARG00000105485 |
| mus_musculus | Slc12a6 | ENSMUSG00000027130 |
| rattus_norvegicus | Slc12a6 | ENSRNOG00000005196 |
| drosophila_melanogaster | CG10413 | FBGN0032689 |
| drosophila_melanogaster | Ncc69 | FBGN0036279 |
| drosophila_melanogaster | kcc | FBGN0261794 |
| caenorhabditis_elegans | WBGENE00012543 | |
| caenorhabditis_elegans | WBGENE00019205 | |
| caenorhabditis_elegans | WBGENE00020207 |
Paralogs (8): SLC12A2 (ENSG00000064651), SLC12A3 (ENSG00000070915), SLC12A1 (ENSG00000074803), SLC12A7 (ENSG00000113504), SLC12A4 (ENSG00000124067), SLC12A5 (ENSG00000124140), SLC12A9 (ENSG00000146828), SLC12A8 (ENSG00000221955)
Protein
Protein identifiers
Solute carrier family 12 member 6 — Q9UHW9 (reviewed: Q9UHW9)
Alternative names: Electroneutral potassium-chloride cotransporter 3, K-Cl cotransporter 3
All UniProt accessions (8): Q9UHW9, A0A6Q8PH21, B3KXX3, H0YKE6, H0YKJ2, H0YKL8, H0YKQ8, H0YMQ9
UniProt curated annotations — full annotation on UniProt →
Function. Mediates electroneutral potassium-chloride cotransport when activated by cell swelling. May contribute to cell volume homeostasis in single cells. Mediates electroneutral potassium-chloride cotransport when activated by cell swelling. May contribute to cell volume homeostasis in single cells. Mediates electroneutral potassium-chloride cotransport when activated by cell swelling. May contribute to cell volume homeostasis in single cells. Mediates electroneutral potassium-chloride cotransport when activated by cell swelling. May contribute to cell volume homeostasis in single cells. Mediates electroneutral potassium-chloride cotransport when activated by cell swelling. May contribute to cell volume homeostasis in single cells. Mediates electroneutral potassium-chloride cotransport when activated by cell swelling. May contribute to cell volume homeostasis in single cells.
Subunit / interactions. Homodimer; adopts a domain-swap conformation at the scissor helices connecting the transmembrane domain and C-terminal domain. Heterodimer with K-Cl cotransporter SLC12A5. Interacts (via C-terminus) with CKB; the interaction may be required for potassium-chloride cotransport activity.
Subcellular location. Cell membrane. Basolateral cell membrane.
Tissue specificity. Expressed in brain (at protein level). Highly expressed in heart, brain and kidney. Detected at lower levels in skeletal muscle, placenta, lung and pancreas. Detected in umbilical vein endothelial cells. More abundant in kidney. Testis specific.
Post-translational modifications. Phosphorylated, phosphorylation regulates transporter activity. Phosphorylated at Thr-991 and Thr-1048 by OXSR1/OSR1 and STK39/SPAK downstream of WNK kinases (WNK1, WNK2, WNK3 or WNK4), inhibiting the potassium-chloride cotransport activity. N-glycosylated.
Disease relevance. Agenesis of the corpus callosum, with peripheral neuropathy (ACCPN) [MIM:218000] A disease that is characterized by severe progressive sensorimotor neuropathy, intellectual disability, dysmorphic features and complete or partial agenesis of the corpus callosum. The disease is caused by variants affecting the gene represented in this entry. Charcot-Marie-Tooth disease, axonal, type 2II (CMT2II) [MIM:620068] A dominant axonal form of Charcot-Marie-Tooth disease, a disorder of the peripheral nervous system, characterized by progressive weakness and atrophy, initially of the peroneal muscles and later of the distal muscles of the arms. Charcot-Marie-Tooth disease is classified in two main groups on the basis of electrophysiologic properties and histopathology: primary peripheral demyelinating neuropathies (designated CMT1 when they are dominantly inherited) and primary peripheral axonal neuropathies (CMT2). Neuropathies of the CMT2 group are characterized by signs of axonal degeneration in the absence of obvious myelin alterations, normal or slightly reduced nerve conduction velocities, and progressive distal muscle weakness and atrophy. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Inhibited following phosphorylation by OXSR1/OSR1 and STK39/SPAK: phosphorylation takes place downstream of WNK kinases (WNK1, WNK2, WNK3 or WNK4) in response to hyperosmotic stress and subsequent cell shrinkage. Activated by N-ethylmaleimide (NEM). Inhibited by DIOA, bumetanide and furosemide.
Domain organisation. N-terminal loop binds to the intracellular vestibule of the transporter, arresting the transporter in an inhibited state.
Induction. Up-regulated by VEGF. Down-regulated by TNF.
Miscellaneous. Produced by alternative promoter usage. Does not differ in the osmotic set point of swelling activation but, activation is more rapid. Does not differ in the osmotic set point of swelling activation but, activation is more rapid.
Similarity. Belongs to the SLC12A transporter family. K/Cl co-transporter subfamily.
Isoforms (6)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9UHW9-1 | 1, KCC3a | yes |
| Q9UHW9-2 | 2, KCC3b | |
| Q9UHW9-3 | 3, KCC3a-X2M | |
| Q9UHW9-4 | 4, KCC3a-S3 | |
| Q9UHW9-5 | 5, KCC3a-S, KCC3a-S1, KCC3a-S2 | |
| Q9UHW9-6 | 6, KCC3b-X2M |
RefSeq proteins (7): NP_001035959, NP_001035960, NP_001035961, NP_001035962, NP_001352017, NP_005126, NP_598408 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000076 | KCL_cotranspt | Family |
| IPR004841 | AA-permease/SLC12A_dom | Domain |
| IPR004842 | SLC12A_fam | Family |
| IPR018491 | SLC12_C | Domain |
Pfam: PF00324, PF03522
Catalyzed reactions (Rhea), 1 shown:
- K(+)(in) + chloride(in) = K(+)(out) + chloride(out) (RHEA:72427)
UniProt features (181 total): helix 41, strand 35, turn 17, transmembrane region 12, modified residue 12, sequence variant 12, mutagenesis site 12, binding site 11, topological domain 10, splice variant 5, region of interest 4, glycosylation site 4, compositionally biased region 2, disulfide bond 2, chain 1, sequence conflict 1
Structure
Experimental structures (PDB)
8 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6M22 | ELECTRON MICROSCOPY | 2.7 |
| 6M1Y | ELECTRON MICROSCOPY | 3.2 |
| 7AIN | ELECTRON MICROSCOPY | 3.2 |
| 7AIO | ELECTRON MICROSCOPY | 3.31 |
| 7D90 | ELECTRON MICROSCOPY | 3.6 |
| 7NGB | ELECTRON MICROSCOPY | 3.64 |
| 6Y5R | ELECTRON MICROSCOPY | 3.76 |
| 6Y5V | ELECTRON MICROSCOPY | 4.08 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9UHW9-F1 | 79.80 | 0.54 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (11): 147; 148; 151; 443; 443; 444; 444; 446; 447; 448; 603
Post-translational modifications (12): 32, 120, 148, 736, 778, 981, 991, 1023, 1029, 1032, 1048, 1121
Disulfide bonds (2): 375–390, 410–420
Glycosylation sites (4): 379, 398, 411, 428
Mutagenesis-validated functional residues (12):
| Position | Phenotype |
|---|---|
| 96 | increases rb(+) uptake; when associated with d-991 and d-991. |
| 96 | decreases rb(+) uptake; when associated with d-991 and d-1048. |
| 505 | decrease in cl(-) efflux. |
| 586 | decrease in cl(-) efflux. |
| 668 | increases transporter activity. |
| 715 | no effect on transporter activity. |
| 746 | slightly reduces transporter activity. |
| 991 | decreased phosphorylation by wnk kinases, leading to increased potassium-chloride cotransport activity. increases rb(+) |
| 991 | decreases rb(+) uptake; when associated with d-96 and d-1048. |
| 1032 | does not affect potassium-chloride cotransport activity. |
| 1048 | decreased phosphorylation by wnk kinases, leading to increased potassium-chloride cotransport activity. increases rb(+) |
| 1048 | decreases rb(+) uptake; when associated with d-96 and d-991. |
Function
Pathways and Gene Ontology
Reactome pathways
8 pathways
| ID | Pathway |
|---|---|
| R-HSA-426117 | Cation-coupled Chloride cotransporters |
| R-HSA-5619039 | Defective SLC12A6 causes agenesis of the corpus callosum, with peripheral neuropathy (ACCPN) |
| R-HSA-1643685 | Disease |
| R-HSA-382551 | Transport of small molecules |
| R-HSA-425393 | |
| R-HSA-425407 | SLC-mediated transmembrane transport |
| R-HSA-5619102 | SLC transporter disorders |
| R-HSA-5619115 | Disorders of transmembrane transporters |
MSigDB gene sets: 434 (showing top):
GOBP_POTASSIUM_ION_TRANSPORT, GOZGIT_ESR1_TARGETS_DN, GOBP_CELLULAR_RESPONSE_TO_CARBOHYDRATE_STIMULUS, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GAUSSMANN_MLL_AF4_FUSION_TARGETS_C_UP, GOBP_POTASSIUM_ION_HOMEOSTASIS, GOBP_INORGANIC_ANION_TRANSPORT, chr15q14, RACCACAR_AML_Q6, FOXO4_01, GGGTGGRR_PAX4_03, GOBP_CELLULAR_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND, ACEVEDO_LIVER_CANCER_WITH_H3K27ME3_UP, GOBP_MONOATOMIC_CATION_TRANSPORT, GOBP_CELL_CELL_SIGNALING
GO Biological Process (14): angiogenesis (GO:0001525), monoatomic ion transport (GO:0006811), cell volume homeostasis (GO:0006884), chemical synaptic transmission (GO:0007268), chloride ion homeostasis (GO:0055064), potassium ion homeostasis (GO:0055075), cellular response to glucose stimulus (GO:0071333), cellular hypotonic response (GO:0071476), cellular hypotonic salinity response (GO:0071477), potassium ion transmembrane transport (GO:0071805), chloride transmembrane transport (GO:1902476), potassium ion import across plasma membrane (GO:1990573), potassium ion transport (GO:0006813), transmembrane transport (GO:0055085)
GO Molecular Function (8): potassium ion transmembrane transporter activity (GO:0015079), potassium:chloride symporter activity (GO:0015379), protein kinase binding (GO:0019901), metal ion binding (GO:0046872), protein binding (GO:0005515), symporter activity (GO:0015293), chloride:monoatomic cation symporter activity (GO:0015377), transmembrane transporter activity (GO:0022857)
GO Cellular Component (5): plasma membrane (GO:0005886), membrane (GO:0016020), basolateral plasma membrane (GO:0016323), axon (GO:0030424), synapse (GO:0045202)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| SLC-mediated transport of inorganic anions | 1 |
| SLC transporter disorders | 1 |
| Transport of small molecules | 1 |
| Disorders of transmembrane transporters | 1 |
| Disease | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| transport | 2 |
| inorganic ion homeostasis | 2 |
| potassium ion transmembrane transport | 2 |
| blood vessel morphogenesis | 1 |
| anatomical structure formation involved in morphogenesis | 1 |
| regulation of cell size | 1 |
| cellular homeostasis | 1 |
| anterograde trans-synaptic signaling | 1 |
| monoatomic anion homeostasis | 1 |
| monoatomic cation homeostasis | 1 |
| intracellular glucose homeostasis | 1 |
| response to glucose | 1 |
| cellular response to hexose stimulus | 1 |
| hypotonic response | 1 |
| cellular response to osmotic stress | 1 |
| hypotonic salinity response | 1 |
| cellular response to salt stress | 1 |
| cellular hypotonic response | 1 |
| potassium ion transport | 1 |
| monoatomic cation transmembrane transport | 1 |
| chloride transport | 1 |
| monoatomic anion transmembrane transport | 1 |
| inorganic cation import across plasma membrane | 1 |
| metal ion transport | 1 |
| cellular process | 1 |
| metal ion transmembrane transporter activity | 1 |
| potassium ion transmembrane transporter activity | 1 |
| chloride:monoatomic cation symporter activity | 1 |
| kinase binding | 1 |
| cation binding | 1 |
| binding | 1 |
| secondary active transmembrane transporter activity | 1 |
| chloride transmembrane transporter activity | 1 |
| monoatomic anion:monoatomic cation symporter activity | 1 |
| transporter activity | 1 |
| transmembrane transport | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
| basal plasma membrane | 1 |
Protein interactions and networks
STRING
1174 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SLC12A6 | STK39 | Q9UEW8 | 885 |
| SLC12A6 | OXSR1 | O95747 | 720 |
| SLC12A6 | SPG11 | Q96JI7 | 685 |
| SLC12A6 | WNK3 | Q9BYP7 | 658 |
| SLC12A6 | STK24 | Q9Y6E0 | 633 |
| SLC12A6 | WNK1 | P54963 | 625 |
| SLC12A6 | ZNF618 | Q5T7W0 | 564 |
| SLC12A6 | SEMA6D | Q8NFY4 | 547 |
| SLC12A6 | WNK4 | Q96J92 | 531 |
| SLC12A6 | VAV2 | P52735 | 471 |
| SLC12A6 | PGK1 | P00558 | 470 |
| SLC12A6 | WNK2 | Q9Y3S1 | 460 |
| SLC12A6 | SLC26A1 | Q9H2B4 | 454 |
| SLC12A6 | SPG7 | Q9UQ90 | 441 |
| SLC12A6 | SPG21 | Q9NZD8 | 437 |
IntAct
87 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ENTREP1 | WWP2 | psi-mi:“MI:0914”(association) | 0.850 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| PDGFRB | PIK3R2 | psi-mi:“MI:0914”(association) | 0.610 |
| SLC12A6 | STK39 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SLC12A6 | CKB | psi-mi:“MI:0915”(physical association) | 0.530 |
| SLC12A6 | CKB | psi-mi:“MI:0403”(colocalization) | 0.530 |
| GPR21 | TMEM120B | psi-mi:“MI:0914”(association) | 0.530 |
| ZNRF4 | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.530 |
| LGALS1 | PODXL | psi-mi:“MI:0914”(association) | 0.530 |
| LGALS3 | PODXL | psi-mi:“MI:0914”(association) | 0.530 |
| SLC12A4 | CLGN | psi-mi:“MI:0914”(association) | 0.530 |
| CLGN | NPC1 | psi-mi:“MI:0914”(association) | 0.530 |
| PTGIR | TMEM63A | psi-mi:“MI:0914”(association) | 0.530 |
| NRN1 | SLC1A1 | psi-mi:“MI:0914”(association) | 0.530 |
| TMEM9 | ESYT2 | psi-mi:“MI:0914”(association) | 0.530 |
| RAB6B | RAB6A | psi-mi:“MI:0914”(association) | 0.530 |
| SLC12A4 | JAGN1 | psi-mi:“MI:0914”(association) | 0.530 |
| RAB6B | SBF1 | psi-mi:“MI:0914”(association) | 0.530 |
| SLC12A4 | LGALS3 | psi-mi:“MI:0914”(association) | 0.530 |
| SLC12A6 | RPL30 | psi-mi:“MI:0915”(physical association) | 0.400 |
| SLC12A6 | H1-2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| SLC12A6 | Ckb | psi-mi:“MI:0915”(physical association) | 0.400 |
| OR2A2 | SLC12A6 | psi-mi:“MI:0915”(physical association) | 0.400 |
| SLC12A6 | SLC25A35 | psi-mi:“MI:0915”(physical association) | 0.400 |
BioGRID (202): SLC12A6 (Affinity Capture-MS), SLC12A6 (Affinity Capture-MS), SLC12A6 (Affinity Capture-MS), SLC12A6 (Affinity Capture-MS), SLC12A6 (Affinity Capture-MS), SLC12A6 (Proximity Label-MS), SLC12A6 (Affinity Capture-MS), SLC12A6 (Affinity Capture-MS), SLC12A6 (Affinity Capture-MS), SLC12A6 (Affinity Capture-MS), SLC12A6 (Affinity Capture-MS), SLC12A6 (Affinity Capture-MS), SLC12A6 (Affinity Capture-MS), SLC12A6 (Affinity Capture-MS), SLC12A6 (Affinity Capture-MS)
ESM2 similar proteins: A0A078H868, A0AAS4, A0JP80, A6X919, D4AD75, O70536, O77760, O77761, P23913, P35610, P53439, P56079, Q14739, Q20696, Q20735, Q28677, Q2PZI1, Q4JM44, Q4R763, Q5R7H4, Q5RK27, Q60457, Q61263, Q63632, Q63633, Q657W3, Q6AX73, Q6Z0E2, Q7T3T4, Q7TSX5, Q86VZ5, Q8IWX5, Q8NHU3, Q8VCQ6, Q91V14, Q924N4, Q965Q4, Q9D4B1, Q9FJB4, Q9H2X9
Diamond homologs: A0A0G2KTI4, A2BFP5, O60146, P38329, P55018, P59158, Q0VGW6, Q66HR0, Q924N4, Q99MR3, Q9BXP2, Q9UHW9, Q09573, Q28677, Q2UVJ5, Q5RK27, Q63632, Q63633, Q6Z0E2, Q7YRU6, Q91V14, Q9H2X9, Q9JIS8, Q9UP95, Q9WVL3, Q9Y666, Q657W3, A0AV02, Q8VI23
SIGNOR signaling
8 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| WNK1 | down-regulates | SLC12A6 | phosphorylation |
| WNK3 | “down-regulates activity” | SLC12A6 | phosphorylation |
| SLC12A6 | “down-regulates quantity” | chloride | relocalization |
| STK39 | “down-regulates activity” | SLC12A6 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 109 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| chloride transmembrane transport | 6 | 15.2× | 2e-03 |
| transmembrane transport | 6 | 10.8× | 4e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1700 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 63 |
| Likely pathogenic | 134 |
| Uncertain significance | 559 |
| Likely benign | 763 |
| Benign | 95 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1029941 | NM_001365088.1(SLC12A6):c.1151C>G (p.Ser384Ter) | Pathogenic |
| 1073089 | NC_000015.9:g.(?34526072)(34631468_?)del | Pathogenic |
| 1075447 | NM_001365088.1(SLC12A6):c.366T>G (p.Tyr122Ter) | Pathogenic |
| 1075604 | NM_001365088.1(SLC12A6):c.2002_2003insTGGA (p.Arg668fs) | Pathogenic |
| 1076707 | NM_001365088.1(SLC12A6):c.390dup (p.Lys131Ter) | Pathogenic |
| 136175 | NM_001365088.1(SLC12A6):c.1584_1585delinsG (p.Phe529fs) | Pathogenic |
| 136176 | NM_001365088.1(SLC12A6):c.2032dup (p.Tyr678fs) | Pathogenic |
| 136177 | NM_001365088.1(SLC12A6):c.1478_1485del (p.Phe493fs) | Pathogenic |
| 1367443 | NM_001365088.1(SLC12A6):c.1639del (p.Leu547fs) | Pathogenic |
| 1368157 | NM_001365088.1(SLC12A6):c.1620_1621del (p.Cys541fs) | Pathogenic |
| 1409721 | NM_001365088.1(SLC12A6):c.2142C>G (p.Tyr714Ter) | Pathogenic |
| 1423567 | NM_001365088.1(SLC12A6):c.1614del (p.Phe538fs) | Pathogenic |
| 1448267 | NM_001365088.1(SLC12A6):c.1962C>A (p.Tyr654Ter) | Pathogenic |
| 1454033 | NM_001365088.1(SLC12A6):c.2157C>G (p.Tyr719Ter) | Pathogenic |
| 1454158 | NM_001365088.1(SLC12A6):c.2036A>G (p.Tyr679Cys) | Pathogenic |
| 1455015 | NM_001365088.1(SLC12A6):c.550C>T (p.Gln184Ter) | Pathogenic |
| 1458003 | NM_001365088.1(SLC12A6):c.2015G>A (p.Trp672Ter) | Pathogenic |
| 1708538 | NM_001365088.1(SLC12A6):c.865G>A (p.Glu289Lys) | Pathogenic |
| 1708540 | NM_001365088.1(SLC12A6):c.2036A>C (p.Tyr679Ser) | Pathogenic |
| 2010893 | NM_001365088.1(SLC12A6):c.262_263del (p.Val88fs) | Pathogenic |
| 2041240 | NM_001365088.1(SLC12A6):c.2808G>A (p.Trp936Ter) | Pathogenic |
| 2085742 | NM_001365088.1(SLC12A6):c.1540A>T (p.Lys514Ter) | Pathogenic |
| 2091121 | NM_001365088.1(SLC12A6):c.563dup (p.Met189fs) | Pathogenic |
| 2094419 | NM_001365088.1(SLC12A6):c.629G>A (p.Trp210Ter) | Pathogenic |
| 2102681 | NM_001365088.1(SLC12A6):c.3146G>A (p.Trp1049Ter) | Pathogenic |
| 2103220 | NM_001365088.1(SLC12A6):c.3178C>T (p.Gln1060Ter) | Pathogenic |
| 2103369 | NM_001365088.1(SLC12A6):c.3196del (p.Glu1066fs) | Pathogenic |
| 2110920 | NM_001365088.1(SLC12A6):c.2180del (p.Gly727fs) | Pathogenic |
| 2427223 | NC_000015.9:g.(?34628591)(34628881_?)del | Pathogenic |
| 2678741 | NM_001365088.1(SLC12A6):c.3321del (p.Asn1107fs) | Pathogenic |
SpliceAI
3006 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 15:34236008:AACTT:A | donor_loss | 1.0000 |
| 15:34236009:ACTTA:A | donor_loss | 1.0000 |
| 15:34236010:CTT:C | donor_loss | 1.0000 |
| 15:34236011:TTA:T | donor_loss | 1.0000 |
| 15:34236012:TAC:T | donor_loss | 1.0000 |
| 15:34236013:A:AC | donor_gain | 1.0000 |
| 15:34236013:A:C | donor_loss | 1.0000 |
| 15:34236014:C:CA | donor_gain | 1.0000 |
| 15:34236014:CG:C | donor_gain | 1.0000 |
| 15:34236014:CGG:C | donor_gain | 1.0000 |
| 15:34236014:CGGA:C | donor_gain | 1.0000 |
| 15:34236033:T:TA | donor_gain | 1.0000 |
| 15:34236045:T:TA | donor_gain | 1.0000 |
| 15:34236195:TGTGC:T | acceptor_gain | 1.0000 |
| 15:34236196:GTGC:G | acceptor_gain | 1.0000 |
| 15:34236197:TGC:T | acceptor_gain | 1.0000 |
| 15:34236198:GC:G | acceptor_gain | 1.0000 |
| 15:34236199:CC:C | acceptor_gain | 1.0000 |
| 15:34236200:C:CA | acceptor_loss | 1.0000 |
| 15:34236200:C:CC | acceptor_gain | 1.0000 |
| 15:34236201:T:G | acceptor_loss | 1.0000 |
| 15:34236813:ATGCT:A | acceptor_loss | 1.0000 |
| 15:34236814:TG:T | acceptor_gain | 1.0000 |
| 15:34236816:C:CC | acceptor_gain | 1.0000 |
| 15:34236820:C:CT | acceptor_gain | 1.0000 |
| 15:34236821:A:AC | acceptor_gain | 1.0000 |
| 15:34236821:A:C | acceptor_gain | 1.0000 |
| 15:34236829:C:CT | acceptor_gain | 1.0000 |
| 15:34236831:CA:C | acceptor_gain | 1.0000 |
| 15:34236832:A:AC | acceptor_gain | 1.0000 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000021097 (15:34331273 G>T), RS1000034995 (15:34305631 A>T), RS1000047310 (15:34326595 T>C), RS1000069455 (15:34257048 G>A), RS1000070472 (15:34299612 T>A,C), RS1000075196 (15:34307767 A>T), RS1000089460 (15:34264163 C>A), RS1000168277 (15:34279309 G>A,C), RS1000236135 (15:34283067 G>A), RS1000253358 (15:34263534 A>G), RS1000268208 (15:34273730 T>C), RS1000282465 (15:34323620 C>A,T), RS1000375456 (15:34312258 G>C), RS1000380125 (15:34270114 A>T), RS1000420297 (15:34299269 A>G)
Disease associations
OMIM: gene MIM:604878 | disease phenotypes: MIM:218000, MIM:620068, MIM:118220, MIM:217990, MIM:276904
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| agenesis of the corpus callosum with peripheral neuropathy | Definitive | Autosomal recessive |
| Charcot-Marie-Tooth disease, axonal, IIa 2II | Strong | Autosomal dominant |
Mondo (6): agenesis of the corpus callosum with peripheral neuropathy (MONDO:0000902), peripheral neuropathy (MONDO:0005244), Charcot-Marie-Tooth disease, axonal, IIa 2II (MONDO:0031068), Charcot-Marie-Tooth disease (MONDO:0015626), corpus callosum, agenesis of (MONDO:0009022), Usher syndrome type 1C (MONDO:0010171)
Orphanet (6): Corpus callosum agenesis-neuronopathy syndrome (Orphanet:1496), Charcot-Marie-Tooth disease/Hereditary motor and sensory neuropathy (Orphanet:166), Isolated corpus callosum agenesis (Orphanet:200), Autosomal recessive axonal hereditary motor and sensory neuropathy (Orphanet:91024), Usher syndrome type 1 (Orphanet:231169), Usher syndrome (Orphanet:886)
HPO phenotypes
87 total (30 of 87 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000218 | High palate |
| HP:0000248 | Brachycephaly |
| HP:0000252 | Microcephaly |
| HP:0000262 | Turricephaly |
| HP:0000276 | Long face |
| HP:0000294 | Low anterior hairline |
| HP:0000316 | Hypertelorism |
| HP:0000324 | Facial asymmetry |
| HP:0000327 | Hypoplasia of the maxilla |
| HP:0000341 | Narrow forehead |
| HP:0000400 | Macrotia |
| HP:0000431 | Wide nasal bridge |
| HP:0000486 | Strabismus |
| HP:0000508 | Ptosis |
| HP:0000545 | Myopia |
| HP:0000565 | Esotropia |
| HP:0000639 | Nystagmus |
| HP:0000709 | Psychosis |
| HP:0000762 | Decreased nerve conduction velocity |
| HP:0000763 | Sensory neuropathy |
| HP:0001182 | Tapered finger |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0001252 | Hypotonia |
| HP:0001256 | Mild intellectual disability |
| HP:0001257 | Spasticity |
| HP:0001263 | Global developmental delay |
| HP:0001270 | Motor delay |
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006528_1 | Barrett’s esophagus x pack-years of smoking exposure interaction | 3.000000e-07 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006526 | pack-years measurement |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D061085 | Agenesis of Corpus Callosum | C10.500.034; C16.131.666.034; C23.300.008 |
| D002607 | Charcot-Marie-Tooth Disease | C10.500.300.200; C10.574.500.495.200; C10.668.829.800.300.200; C16.131.666.300.200; C16.320.400.375.200 |
| C536446 | Corpus callosum agenesis neuronopathy (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: transporter — SLC12 family of cation-coupled chloride transporters
CTD chemical–gene interactions
42 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, affects cotreatment, increases abundance, increases expression | 3 |
| Cadmium Chloride | decreases expression, increases expression | 3 |
| (+)-JQ1 compound | increases expression | 2 |
| Cyclosporine | decreases expression, increases expression | 2 |
| FR900359 | affects phosphorylation | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | increases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| potassium chromate(VI) | decreases expression | 1 |
| avobenzone | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| oxamflatin | increases expression | 1 |
| apicidin | increases expression | 1 |
| dimethylarsinous acid | increases expression | 1 |
| NSC 689534 | increases expression, affects binding | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Norethindrone Acetate | affects cotreatment, increases expression | 1 |
| Arsenic | affects cotreatment, decreases expression, increases abundance | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Caffeine | decreases phosphorylation | 1 |
| Copper | affects binding, increases expression | 1 |
| Cytarabine | decreases expression | 1 |
| Dimethylnitrosamine | increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Estradiol | affects cotreatment, increases expression | 1 |
| Manganese | affects cotreatment, decreases expression, increases abundance | 1 |
Cellosaurus cell lines
5 cell lines: 3 cancer cell line, 2 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D4DJ | HEK-SLC12A6-KO-c4 | Transformed cell line | Female |
| CVCL_D4DK | HEK-SLC12A6-KO-c5 | Transformed cell line | Female |
| CVCL_D4HN | HCT116-SLC12A6-KO-c17 | Cancer cell line | Male |
| CVCL_D4HP | HCT116-SLC12A6-KO-c19 | Cancer cell line | Male |
| CVCL_TL54 | HAP1 SLC12A6 (-) | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00380965 | PHASE4 | COMPLETED | Evaluation of the Efficacy of Cesamet™ for the Treatment of Pain in Patients With Chemotherapy-Induced Neuropathy |
| NCT00487981 | PHASE4 | TERMINATED | Spinal Cord Stimulation for Painful Diabetic Neuropathy |
| NCT00904202 | PHASE4 | COMPLETED | A Study Of Lidocaine Patch 5% Alone, Gabapentin Alone, And Lidocaine Patch 5% And Gabapentin In Combination For The Relief Of Pain In Patients With Diverse Peripheral Neuropathic Pain Conditions |
| NCT01192113 | PHASE4 | COMPLETED | Safety and Efficacy of Mecobalamin Injection in Peripheral Neuropathies Patients (Study JGAZSY091109) |
| NCT01373983 | PHASE4 | COMPLETED | Intrathecal Bolus Doses of Ziconotide |
| NCT01458015 | PHASE4 | TERMINATED | Tapentadol Versus Oxycodone - a Mechanism-based Treatment Approach in Neuropathic Pain |
| NCT02074267 | PHASE4 | COMPLETED | Clinical Study for Assessment of the Efficacy of Gabapentin (Carbatin and Neurontin) in Patients With Neuropathy Pain |
| NCT02372149 | PHASE4 | UNKNOWN | IVIg for Demyelination in Diabetes Mellitus |
| NCT02670161 | PHASE4 | ENROLLING_BY_INVITATION | Quality Improvement and Practice Based Research in Neurology Using the EMR |
| NCT07022938 | PHASE4 | COMPLETED | Nutritional Supplement for Treating Chemotherapy Induced Neuropathy |
| NCT07025005 | PHASE4 | RECRUITING | Fenofibrate Role in the Prophylaxis From Peripheral Neuropathy Induced by Bortezomib, Lenalidomide and Dexamethasone (VRd) Protocol in the Treatment of Patients With Multiple Myeloma (MM) |
| NCT00058071 | PHASE3 | COMPLETED | Amifostine in Treating Peripheral Neuropathy in Patients Who Have Received Chemotherapy for Cancer |
| NCT00125268 | PHASE3 | TERMINATED | Near Infrared Light for the Treatment of Painful Peripheral Neuropathy |
| NCT00195013 | PHASE3 | COMPLETED | Randomized Placebo-Controlled Trial of Glutamine for Breast Cancer Patients With Peripheral Neuropathy |
| NCT00232141 | PHASE3 | COMPLETED | Study of Pregabalin Versus Placebo in the Treatment of Nerve Pain Associated With HIV Neuropathy |
| NCT00264875 | PHASE3 | COMPLETED | Open Label Safety And Efficacy Study Of Pregabalin In Subjects With Nerve Pain Asociated With Human Immunodeficiency Virus (HIV) Neuropathy |
| NCT00369564 | PHASE3 | COMPLETED | Glutamic Acid in Reducing Nerve Damage Caused by Vincristine in Young Patients With Cancer |
| NCT00471445 | PHASE3 | COMPLETED | Topical Amitriptyline and Ketamine Cream in Treating Peripheral Neuropathy Caused by Chemotherapy in Cancer Patients |
| NCT00489411 | PHASE3 | COMPLETED | Duloxetine in Treating Peripheral Neuropathy Caused by Chemotherapy in Patients With Cancer |
| NCT00710554 | PHASE3 | COMPLETED | A Study of Sativex® for Pain Relief of Peripheral Neuropathic Pain, Associated With Allodynia |
| NCT00711880 | PHASE3 | COMPLETED | A Study of Sativex® for Relief of Peripheral Neuropathic Pain Associated With Allodynia. |
| NCT00713323 | PHASE3 | COMPLETED | A Study to Compare the Safety and Tolerability of Sativex® in Patients With Neuropathic Pain. |
| NCT00713817 | PHASE3 | COMPLETED | A Study to Determine the Maintenance of Effect After Long-term Treatment of Sativex® in Subjects With Neuropathic Pain |
| NCT00775645 | PHASE3 | COMPLETED | S0715: Acetyl-L-Carnitine in Preventing Neuropathy in Women With Stage I, II, or IIIA Breast Cancer Undergoing Chemo |
| NCT00872352 | PHASE3 | UNKNOWN | Evaluation of Bortezomib Induced Peripheral Neuropathy of Multiple Myeloma (MM) Patients |
| NCT00998738 | PHASE3 | TERMINATED | Calcium and Magnesium in Preventing Peripheral Neuropathy Caused by Ixabepilone in Patients With Breast Cancer |
| NCT01049217 | PHASE3 | TERMINATED | Pregabalin Versus Placebo In The Treatment Of Neuropathic Pain Associated With HIV Neuropathy |
| NCT01099449 | PHASE3 | COMPLETED | Calcium Gluconate and Magnesium Sulfate in Preventing Neurotoxicity in Patients With Colon Cancer or Rectal Cancer Receiving Oxaliplatin-Based Combination Chemotherapy |
| NCT01288937 | PHASE3 | TERMINATED | A Placebo Controlled, Randomized, Double Blind Trial of Milnacipran for the Treatment of Idiopathic Neuropathy Pain |
| NCT01492920 | PHASE3 | WITHDRAWN | Acetyl-L-Carnitine Hydrochloride in Preventing Peripheral Neuropathy in Patients With Recurrent Ovarian Epithelial Cancer, Primary Peritoneal Cavity Cancer, or Fallopian Tube Cancer Undergoing Chemotherapy |
| NCT01775449 | PHASE3 | COMPLETED | Prevention of Oxaliplatin-induced Neuropathic Pain by a Specific Diet |
| NCT02024191 | PHASE3 | UNKNOWN | The Role of Glutamine for Preventing Oxaliplatin-Induced Peripheral Neuropathy |
| NCT02217267 | PHASE3 | COMPLETED | Long Term Outcome After Serial Lidocaine Infusion in Peripheral Neuropathic Pain |
| NCT02294149 | PHASE3 | UNKNOWN | Vit D3 and Omega 3 in Chemo Induced Neuropathy |
| NCT02311907 | PHASE3 | COMPLETED | Glutathione in Preventing Peripheral Neuropathy Caused by Paclitaxel and Carboplatin in Patients With Ovarian Cancer, Fallopian Tube Cancer, and/or Primary Peritoneal Cancer |
| NCT06071936 | PHASE3 | UNKNOWN | Efficacy and Tolerability of AP707 in Patients With Chronic Pain Due to Traumatic or Post-operative Peripheral Neuropathy |
| NCT06071975 | PHASE3 | UNKNOWN | Long Term Efficacy and Tolerability of AP707 in Patients With Chronic Pain Due to Diabetic Polyneuropathy |
| NCT06071988 | PHASE3 | UNKNOWN | Long Term Efficacy and Tolerability of AP707 in Patients With Chronic Pain Due to Traumatic or Post-operative Peripheral Neuropathy |
| NCT06072573 | PHASE3 | UNKNOWN | Efficacy and Tolerability of AP707 in Patients With Chronic Pain Due to Diabetic Polyneuropathy |
| NCT07287592 | PHASE3 | NOT_YET_RECRUITING | Glutamine for the Prophylaxis of Vincristine-induced Neuropathy in Children and Adolescents With Cancer. |
Related Atlas pages
- Associated diseases: agenesis of the corpus callosum with peripheral neuropathy, Charcot-Marie-Tooth disease, axonal, IIa 2II
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): agenesis of the corpus callosum with peripheral neuropathy, Barrett esophagus, Charcot-Marie-Tooth disease, Charcot-Marie-Tooth disease, axonal, IIa 2II, corpus callosum, agenesis of, peripheral neuropathy, Usher syndrome type 1C