SLC12A9-AS1

Summary

SLC12A9-AS1 (SLC12A9 antisense RNA 1, HGNC:40807) is a long non-coding RNA gene on chromosome 7q22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40807
Approved symbol	SLC12A9-AS1
Name	SLC12A9 antisense RNA 1
Location	7q22.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-126L15.4
Ensembl gene	ENSG00000236305
Ensembl biotype	lncRNA
Entrez	105375430
RNAcentral	URS0000BC459D — lncRNA, 374 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000412754, ENST00000684935, ENST00000702979, ENST00000814167, ENST00000814168, ENST00000814169, ENST00000814170, ENST00000814171, ENST00000814172

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000412754 — 2 exons

Exon	Start	End
ENSE00004214930	100837306	100837579
ENSE00004214937	100852514	100852645

Expression profiles

Bgee: expression breadth ubiquitous, 121 present calls, max score 99.27.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 3.0721 / max 36.8883, expressed in 1107 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
85250	3.0721	1107

Top tissues by expression

121 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	99.27	gold quality
skin of abdomen	UBERON:0001416	71.27	gold quality
zone of skin	UBERON:0000014	70.85	gold quality
skin of leg	UBERON:0001511	70.72	gold quality
bone marrow cell	CL:0002092	67.87	silver quality
right uterine tube	UBERON:0001302	67.22	gold quality
esophagus mucosa	UBERON:0002469	67.02	gold quality
left ovary	UBERON:0002119	66.87	gold quality
ganglionic eminence	UBERON:0004023	66.52	gold quality
ovary	UBERON:0000992	66.20	gold quality
endometrium	UBERON:0001295	65.97	gold quality
mucosa of transverse colon	UBERON:0004991	64.79	gold quality
myometrium	UBERON:0001296	64.07	gold quality
fallopian tube	UBERON:0003889	63.94	gold quality
right ovary	UBERON:0002118	63.46	gold quality
placenta	UBERON:0001987	63.19	gold quality
vermiform appendix	UBERON:0001154	63.08	gold quality
vagina	UBERON:0000996	63.07	gold quality
lower esophagus mucosa	UBERON:0035834	63.01	gold quality
bone marrow	UBERON:0002371	62.94	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	62.84	gold quality
body of uterus	UBERON:0009853	62.77	gold quality
ectocervix	UBERON:0012249	62.54	gold quality
body of pancreas	UBERON:0001150	62.33	gold quality
lymph node	UBERON:0000029	62.20	gold quality
pancreas	UBERON:0001264	62.06	gold quality
monocyte	CL:0000576	61.79	gold quality
thoracic mammary gland	UBERON:0005200	61.64	gold quality
leukocyte	CL:0000738	61.49	gold quality
prostate gland	UBERON:0002367	61.31	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.85

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.