SLC14A1
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Also known as HsT1341RACH1RACH2
Summary
SLC14A1 (solute carrier family 14 member 1 (Kidd blood group), HGNC:10918) is a protein-coding gene on chromosome 18q12.3, encoding Urea transporter 1 (Q13336). Mediates the transport of urea driven by a concentration gradient across the cell membrane of erythrocytes.
The protein encoded by this gene is a membrane transporter that mediates urea transport in erythrocytes. This gene forms the basis for the Kidd blood group system.
Source: NCBI Gene 6563 — RefSeq curated summary.
At a glance
- Gene–disease (curated): blood group, kidd system (Limited, GenCC) — +1 more curated relationship
- GWAS associations: 9
- Clinical variants (ClinVar): 73 total — 3 pathogenic, 2 likely-pathogenic
- Druggable target: yes
- MANE Select transcript:
NM_015865
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:10918 |
| Approved symbol | SLC14A1 |
| Name | solute carrier family 14 member 1 (Kidd blood group) |
| Location | 18q12.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | HsT1341, RACH1, RACH2 |
| Ensembl gene | ENSG00000141469 |
| Ensembl biotype | protein_coding |
| OMIM | 613868 |
| Entrez | 6563 |
Gene structure
Transcript identifiers
Ensembl transcripts: 28 — 22 protein_coding, 4 retained_intron, 2 nonsense_mediated_decay
ENST00000321925, ENST00000402943, ENST00000415427, ENST00000436407, ENST00000502059, ENST00000535474, ENST00000586056, ENST00000586142, ENST00000586854, ENST00000586951, ENST00000587601, ENST00000588179, ENST00000589322, ENST00000589700, ENST00000590246, ENST00000590377, ENST00000591541, ENST00000591642, ENST00000619403, ENST00000644925, ENST00000899336, ENST00000899337, ENST00000899338, ENST00000899339, ENST00000899340, ENST00000899341, ENST00000899342, ENST00000964132
RefSeq mRNA: 6 — MANE Select: NM_015865
NM_001128588, NM_001146036, NM_001146037, NM_001308278, NM_001308279, NM_015865
CCDS: CCDS11925, CCDS45860, CCDS77181, CCDS82252
Canonical transcript exons
ENST00000321925 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001263021 | 45724950 | 45725013 |
| ENSE00001383862 | 45749778 | 45752520 |
| ENSE00003489500 | 45748376 | 45748425 |
| ENSE00003546283 | 45730300 | 45730471 |
| ENSE00003599719 | 45734274 | 45734402 |
| ENSE00003607837 | 45731015 | 45731204 |
| ENSE00003652400 | 45739528 | 45739662 |
| ENSE00003673767 | 45739163 | 45739310 |
| ENSE00003787100 | 45736456 | 45736648 |
| ENSE00003850265 | 45724181 | 45724273 |
Expression profiles
Bgee: expression breadth ubiquitous, 211 present calls, max score 98.05.
FANTOM5 (CAGE): breadth broad, TPM avg 15.1858 / max 690.3361, expressed in 719 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 170125 | 12.0532 | 551 |
| 170124 | 1.3990 | 296 |
| 170126 | 0.7466 | 47 |
| 170122 | 0.7306 | 118 |
| 170127 | 0.1310 | 56 |
| 170128 | 0.1098 | 49 |
| 170123 | 0.0156 | 3 |
Top tissues by expression
279 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| tibia | UBERON:0000979 | 98.05 | gold quality |
| mucosa of urinary bladder | UBERON:0001259 | 94.32 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 91.91 | gold quality |
| right coronary artery | UBERON:0001625 | 91.75 | gold quality |
| urinary bladder | UBERON:0001255 | 90.55 | gold quality |
| medial globus pallidus | UBERON:0002477 | 89.44 | gold quality |
| ascending aorta | UBERON:0001496 | 89.24 | gold quality |
| thoracic aorta | UBERON:0001515 | 88.98 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 88.68 | gold quality |
| globus pallidus | UBERON:0001875 | 88.57 | gold quality |
| cranial nerve II | UBERON:0000941 | 88.46 | gold quality |
| substantia nigra | UBERON:0002038 | 88.05 | gold quality |
| prostate gland | UBERON:0002367 | 87.91 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 87.90 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 87.81 | gold quality |
| caudate nucleus | UBERON:0001873 | 87.07 | gold quality |
| buccal mucosa cell | CL:0002336 | 87.00 | silver quality |
| apex of heart | UBERON:0002098 | 86.97 | gold quality |
| putamen | UBERON:0001874 | 86.87 | gold quality |
| CA1 field of hippocampus | UBERON:0003881 | 86.62 | silver quality |
| midbrain | UBERON:0001891 | 86.40 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 85.85 | gold quality |
| amygdala | UBERON:0001876 | 85.72 | gold quality |
| hypothalamus | UBERON:0001898 | 85.16 | gold quality |
| spinal cord | UBERON:0002240 | 84.90 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 84.27 | gold quality |
| Ammon’s horn | UBERON:0001954 | 84.15 | gold quality |
| inferior olivary complex | UBERON:0002127 | 83.78 | gold quality |
| metanephros cortex | UBERON:0010533 | 83.47 | gold quality |
| bone marrow | UBERON:0002371 | 83.36 | gold quality |
Single-cell (SCXA)
Detected in 10 experiment(s), a significant marker in 6.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-180759 | yes | 1751.54 |
| E-MTAB-10283 | yes | 193.82 |
| E-HCAD-25 | yes | 27.32 |
| E-MTAB-9221 | yes | 12.71 |
| E-GEOD-84465 | yes | 10.75 |
| E-GEOD-124858 | no | 222.69 |
| E-MTAB-9067 | no | 3.57 |
| E-HCAD-10 | no | 2.91 |
| E-MTAB-9467 | no | 0.72 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): NFAT5
miRNA regulators (miRDB)
125 targeting SLC14A1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-MIR-5193 | 100.00 | 67.26 | 1744 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-33A-5P | 99.99 | 68.62 | 1055 |
| HSA-MIR-33B-5P | 99.99 | 68.58 | 1062 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-559 | 99.95 | 72.28 | 3609 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-141-3P | 99.94 | 72.79 | 2421 |
| HSA-MIR-200A-3P | 99.94 | 72.68 | 2420 |
| HSA-MIR-548A-5P | 99.94 | 71.27 | 3482 |
| HSA-MIR-548AD-5P | 99.94 | 71.23 | 3502 |
Literature-anchored findings (GeneRIF, showing 36)
- gene encodes the Kidd blood group antigens (PMID:12093813)
- Kidd antigen/UT-B urea transporter is physiologically expressed in the human colon epithelium, where it could participate in the transport of urea across the colon mucosa. (PMID:14985236)
- high frequency of JK null allele in Taiwanese indigenous groups (PMID:18713105)
- Three blood group antigens genes, namely CD55, CD151, and SLC14A1, have been subjected to balancing selection, a process, rare outside MHC genes, which maintains variability at a locus. (PMID:18997004)
- Results illustrate differential protein abundance of functional UT-B protein in different sections of the human colon, strongly correlating to regions that contain the largest populations of intestinal bacteria. (PMID:19926813)
- A new allele JK*01W has 3 changes (130G>A, 588A>G, Intron 9-46a>g)in addition to 838G. It is associated with weak expression of the Jk-a antigen on erythrocytes. (PMID:21309779)
- rs17674580, or other sequence variants of SLC14A1, indirectly modifies urinary bladder cancer risk by affecting urine production. (PMID:21750109)
- Genetic variation in SLC14A1 could provide new etiological insights into bladder carcinogenesis. (PMID:21824976)
- Loss of SLC14A1 is associated with lung adenocarcinoma. (PMID:22223368)
- the rate of urea conduction in UT-B is increased by hypoosmotic stress, and the site of osmoregulation coincides with the location of the energy barrier (PMID:22733730)
- Four novel JK-null alleles were noted to be associated with the Jk(a-b-) phenotype. (PMID:22738189)
- Thienoquinoline PU-14 is a selective UT inhibitor and has urea-selective diuretic activity. (PMID:23486518)
- Inhibitor and mutagenesis studies and results of molecular dynamics simulations suggest that NH and HO pass through the three monomeric urea channels in UT-B. (PMID:23552862)
- Data indicate that urea transporter UT-A1 successfully trafficking to the apical membrane of the epithelial cells is crucial for the regulation of urea transport. (PMID:23698785)
- SLC14A1 could be a unique urea transporter in the bladder that has the ability to influence urine concentration and that this mechanism might explain the increased bladder cancer susceptibility associated with rs10775480. (PMID:23754249)
- UT-B should be considered as a new member of the water channel family. (PMID:24376529)
- High-throughput Kell, Kidd, and Duffy matrix-assisted laser desorption/ionization, time-of-flight mass spectrometry-based blood group genotyping of 4000 donors shows close to full concordance with serotyping and detects new alleles. (PMID:24845979)
- Novel polymorphisms in exon 9 of the JSLC14A1 gene in Japanese individuals associated with the Jk(a-b-) phenotype. (PMID:24877238)
- these data confirm the presence of UT-B protein within the human bladder. (PMID:25209859)
- Results suggested that polymorphism in TERTC/T and SLC14A1C/T confirmed high risk for BC in North Indian population. (PMID:25218484)
- Studies indicate that expression of urea transporter UT-B confers high urea permeability to erythrocytes. (PMID:25298342)
- Studies indicate that acid substitution in the urea transporter Slc14A1 UT-B protein determines the erythrocyte Kidd blood group antigen. (PMID:25298346)
- Reduction or loss of UT-B expression may be related to the incidence, progression and invasiveness of bladder urothelial carcinoma. (PMID:25445116)
- The Jk(a-b-) phenotype in the Chinese population shows several different molecular mechanisms. A novel missense mutation nt737T>G of JK gene was found as associated with Jk(a-b-) phenotype. (PMID:25807964)
- In addition to the well known Polynesian Jknull allele, three Jknull alleles were detected including one novel Jknull allele: JKA (130A, 220G). (PMID:26969102)
- The urea transporter subtypes, UT-A1 and UT-B1, were expressed in the skin basal cell layer and exocrine sweat glands. The abundance of UT-A1 and UT-B1 in uremic sweat glands was significantly increased in UP, while the expression of AQP5 was decreased. (PMID:29279852)
- Study found that UT-B expression is decreased in human melanoma tissue. Its overexpression plays a role in tumor growth regulation of melanoma cell lines and animal transplantation models, and this, combined with findings from UT-B inhibition in bladder cancer, suggests that UT-B may have tumor suppressor functions. (PMID:30290033)
- A novel JK null allele in a Brazilian patient with sickle cell disease (SCD). (PMID:30964549)
- Decreased Expression of the Human Urea Transporter SLC14A1 in Bone is Induced by Cytokines and Stimulates Adipogenesis of Mesenchymal Progenitor Cells. (PMID:31958845)
- SLC14A1 prevents oncometabolite accumulation and recruits HDAC1 to transrepress oncometabolite genes in urothelial carcinoma. (PMID:33052246)
- Diversity of variant alleles encoding Kidd, Duffy, and Kell antigens in individuals with sickle cell disease using whole genome sequencing data from the NHLBI TOPMed Program. (PMID:33231305)
- A potential link between AQP3 and SLC14A1 gene expression level and clinical parameters of maintenance hemodialysis patients. (PMID:36038817)
- Study on the role of SLC14A1 gene in biochemical recurrence of prostate cancer. (PMID:36257969)
- SLC14A1 is a new biomarker in renal cancer. (PMID:37004669)
- Down-regulation of SLC14A1 in prostate cancer activates CDK1/CCNB1 and mTOR pathways and promotes tumor progression. (PMID:38942821)
- SLC14A1 and TGF-beta signaling: a feedback loop driving EMT and colorectal cancer metachronous liver metastasis. (PMID:39061061)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | slc14a2 | ENSDARG00000051914 |
| mus_musculus | Slc14a1 | ENSMUSG00000059336 |
| rattus_norvegicus | Slc14a1 | ENSRNOG00000016753 |
Paralogs (1): SLC14A2 (ENSG00000132874)
Protein
Protein identifiers
Urea transporter 1 — Q13336 (reviewed: Q13336)
Alternative names: Solute carrier family 14 member 1, Urea transporter, erythrocyte
All UniProt accessions (11): B4DFJ8, E9NSU1, Q13336, F5GWS2, F6WB45, G0W2N5, K7EJ54, K7EJF6, K7EQM7, K7ESL3, M0QYS8
UniProt curated annotations — full annotation on UniProt →
Function. Mediates the transport of urea driven by a concentration gradient across the cell membrane of erythrocytes. Also mediates the transport of urea across the cell membrane of the renal inner medullary collecting duct which is critical to the urinary concentrating mechanism. Facilitates water transport in erythrocytes.
Subunit / interactions. Homotrimer; each subunit contains a pore through which urea permeates. Identified in a complex with STOM.
Subcellular location. Cell membrane. Basolateral cell membrane.
Tissue specificity. Detected in erythrocytes (at protein level). Expressed in spleen erythroblasts and tumoral kidney.
Activity regulation. Inhibited by phloretin and para-chloromercuribenzene sulfonate.
Polymorphism. SLC14A1 is responsible for the Kidd blood group system (JK) [MIM:111000]. JK is defined by 2 alleles, JK01 and JK02 that give rise to Jk(a) and Jk(b) antigens respectively. The molecular basis of the Jk(a)/Jk(b) antigens is a single variation in position 280; Asp-280 corresponds to Jk(a) and Asn-280 to Jk(b). Some individuals carry silenced JK01 and JK02 alleles, designated JK01N or JK02N. They results in a Jk(null) phenotype associated with reduced urea permeability of red blood cells. Jk(null) is not associated with any obvious clinical syndrome except for a urine concentration defect.
Similarity. Belongs to the urea transporter family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q13336-1 | 1 | yes |
| Q13336-2 | 2 |
RefSeq proteins (6): NP_001122060, NP_001139508, NP_001139509, NP_001295207, NP_001295208, NP_056949* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR004937 | Urea_transporter | Family |
| IPR029020 | Ammonium/urea_transptr | Homologous_superfamily |
Pfam: PF03253
Catalyzed reactions (Rhea), 1 shown:
- urea(in) = urea(out) (RHEA:32799)
UniProt features (53 total): helix 23, transmembrane region 9, sequence variant 8, turn 4, sequence conflict 3, strand 2, chain 1, site 1, glycosylation site 1, splice variant 1
Structure
Experimental structures (PDB)
5 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6QD5 | X-RAY DIFFRACTION | 2.4 |
| 8XDF | ELECTRON MICROSCOPY | 2.4 |
| 8BLP | ELECTRON MICROSCOPY | 2.6 |
| 9J22 | ELECTRON MICROSCOPY | 2.75 |
| 9ZD0 | ELECTRON MICROSCOPY | 2.8 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q13336-F1 | 92.94 | 0.89 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 339 (important for channel permeability)
Glycosylation sites (1): 211
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-549127 | SLC-mediated transport of organic cations |
| R-HSA-425366 |
MSigDB gene sets: 0 (showing top):
GO Biological Process (5): urea transport (GO:0015840), establishment of localization in cell (GO:0051649), transmembrane transport (GO:0055085), urea transmembrane transport (GO:0071918), water transport (GO:0006833)
GO Molecular Function (4): water transmembrane transporter activity (GO:0005372), urea transmembrane transporter activity (GO:0015204), urea channel activity (GO:0015265), protein binding (GO:0005515)
GO Cellular Component (3): plasma membrane (GO:0005886), basolateral plasma membrane (GO:0016323), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| SLC-mediated transmembrane transport | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| transmembrane transporter activity | 2 |
| one-carbon compound transport | 1 |
| nitrogen compound transport | 1 |
| establishment of localization | 1 |
| cellular localization | 1 |
| transport | 1 |
| cellular process | 1 |
| urea transport | 1 |
| transmembrane transport | 1 |
| fluid transport | 1 |
| water transport | 1 |
| urea transmembrane transport | 1 |
| urea transmembrane transporter activity | 1 |
| channel activity | 1 |
| binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
| basal plasma membrane | 1 |
| plasma membrane region | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
910 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SLC14A1 | CFB | P00751 | 648 |
| SLC14A1 | GATA1 | P15976 | 592 |
| SLC14A1 | KEL | P23276 | 542 |
| SLC14A1 | UGT1A10 | Q9HAW8 | 513 |
| SLC14A1 | UGT1A8 | Q9HAW9 | 513 |
| SLC14A1 | UGT1A6 | P19224 | 508 |
| SLC14A1 | ZNF134 | P52741 | 507 |
| SLC14A1 | RHCE | P18577 | 506 |
| SLC14A1 | UGT1A1 | P22309 | 506 |
| SLC14A1 | UGT1A7 | Q9HAW7 | 506 |
| SLC14A1 | UGT1A4 | P22310 | 500 |
| SLC14A1 | ZNF160 | Q9HCG1 | 479 |
| SLC14A1 | AQP3 | Q92482 | 476 |
| SLC14A1 | ERMAP | Q96PL5 | 452 |
| SLC14A1 | SLC4A1 | P02730 | 449 |
IntAct
9 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SLC4A1 | FLOT1 | psi-mi:“MI:0914”(association) | 0.530 |
| SCRIB | SLC14A1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CFTR | SLC14A1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ATP2B4 | FLOT1 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC14A1 | UBB | psi-mi:“MI:0914”(association) | 0.350 |
| SLC14A1 | ATP6AP2 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC14A1 | PLXNB2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (57): SLC14A1 (Two-hybrid), SLC14A1 (Two-hybrid), SLC14A1 (Two-hybrid), SLC14A1 (Two-hybrid), THSD7B (Two-hybrid), TMIE (Two-hybrid), C2orf82 (Two-hybrid), RTP2 (Two-hybrid), GIMAP1 (Two-hybrid), FIS1 (Two-hybrid), LOC100507537 (Two-hybrid), UBB (Affinity Capture-MS), ATP6V0A2 (Affinity Capture-MS), ATP6V0A1 (Affinity Capture-MS), LGALS3 (Affinity Capture-MS)
ESM2 similar proteins: A0A0R4IQZ2, A1KSH5, A6V3A0, A9M2A8, A9RA88, B7UZU0, C4LD54, C5MK33, D3INW7, E9PXX9, O00337, O43868, O62667, O88575, O88627, O97681, P15920, P20715, P97689, Q02PG0, Q13336, Q15849, Q28614, Q28GF5, Q4V7N7, Q5F410, Q5F6X7, Q5QF96, Q5R687, Q5U4Q2, Q62668, Q62674, Q62773, Q6C741, Q6PQZ3, Q6UPR8, Q72CX3, Q7EYH7, Q7Z2K6, Q8R4T9
Diamond homologs: C5MK33, D3INW7, P97689, Q13336, Q15849, Q28614, Q5QF96, Q62668, Q72CX3, Q8R4T9, Q8VHL0
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
73 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 3 |
| Likely pathogenic | 2 |
| Uncertain significance | 43 |
| Likely benign | 5 |
| Benign | 10 |
Top pathogenic / likely-pathogenic (5)
| Variant ID | HGVS | Classification |
|---|---|---|
| 17719 | NM_015865.7(SLC14A1):c.663+1G>T | Pathogenic |
| 17720 | NM_015865.7(SLC14A1):c.871T>C (p.Ser291Pro) | Pathogenic |
| 17721 | NM_015865.7(SLC14A1):c.-21-131_341+571del | Pathogenic |
| 17718 | NM_015865.7(SLC14A1):c.342-1G>A | Likely pathogenic |
| 2636442 | NM_015865.7(SLC14A1):c.264_265dup (p.Asn89fs) | Likely pathogenic |
SpliceAI
1654 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 18:45724269:GTGGT:G | donor_gain | 1.0000 |
| 18:45724270:TGGT:T | donor_gain | 1.0000 |
| 18:45724271:GGTG:G | donor_gain | 1.0000 |
| 18:45724272:GT:G | donor_gain | 1.0000 |
| 18:45724274:G:GG | donor_gain | 1.0000 |
| 18:45727251:AT:A | acceptor_gain | 1.0000 |
| 18:45727252:T:G | acceptor_gain | 1.0000 |
| 18:45727256:T:G | acceptor_gain | 1.0000 |
| 18:45724273:TG:T | donor_loss | 0.9900 |
| 18:45724274:G:GA | donor_loss | 0.9900 |
| 18:45727251:A:AG | acceptor_gain | 0.9900 |
| 18:45727252:T:TA | acceptor_gain | 0.9900 |
| 18:45727255:A:AG | acceptor_gain | 0.9900 |
| 18:45727255:ATT:A | acceptor_gain | 0.9900 |
| 18:45727257:T:A | acceptor_gain | 0.9900 |
| 18:45729984:A:AG | acceptor_gain | 0.9900 |
| 18:45729985:G:GG | acceptor_gain | 0.9900 |
| 18:45731013:A:AG | acceptor_gain | 0.9900 |
| 18:45731014:G:GA | acceptor_gain | 0.9900 |
| 18:45731014:GAC:G | acceptor_gain | 0.9900 |
| 18:45739307:GCGG:G | donor_gain | 0.9900 |
| 18:45739660:GTG:G | donor_gain | 0.9900 |
| 18:45749772:CCCCA:C | acceptor_loss | 0.9900 |
| 18:45749773:CCCA:C | acceptor_loss | 0.9900 |
| 18:45749775:CA:C | acceptor_loss | 0.9900 |
| 18:45749777:G:GA | acceptor_loss | 0.9900 |
| 18:45724868:G:GT | donor_gain | 0.9800 |
| 18:45727247:T:TA | acceptor_gain | 0.9800 |
| 18:45729282:G:GA | donor_gain | 0.9800 |
| 18:45731009:TTCCA:T | acceptor_loss | 0.9800 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000012987 (18:45746082 C>T), RS1000075611 (18:45739874 G>A), RS1000107337 (18:45734368 C>G,T), RS1000281392 (18:45728607 A>C), RS1000412027 (18:45733556 A>C), RS1000616971 (18:45744342 A>G), RS1000638627 (18:45751813 T>C), RS1000691223 (18:45738493 C>T), RS1000721542 (18:45751659 T>A), RS1000773872 (18:45751256 C>G,T), RS1000859477 (18:45726213 G>A), RS1000867960 (18:45738795 G>A), RS1001001363 (18:45726907 C>A), RS1001332142 (18:45740963 G>A), RS1001371537 (18:45732516 G>C,T)
Disease associations
OMIM: gene MIM:613868 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| blood group, kidd system | Limited | Autosomal dominant |
| nephrogenic diabetes insipidus | No Known Disease Relationship | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| nephrogenic diabetes insipidus | No Known Disease Relationship | AR |
Mondo (2): nephrogenic diabetes insipidus (MONDO:0016383), (MONDO:0020612)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
9 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001153_1 | Bladder cancer | 8.000000e-11 |
| GCST001193_1 | Bladder cancer | 9.000000e-09 |
| GCST005024_109 | Pursuit maintenance gain | 3.000000e-06 |
| GCST005992_25 | Mean corpuscular hemoglobin concentration | 3.000000e-48 |
| GCST010538_9 | Sum of carotid plaque area | 5.000000e-06 |
| GCST010539_8 | Sum of stenosis | 3.000000e-07 |
| GCST90002385_336 | High light scatter reticulocyte count | 5.000000e-18 |
| GCST90002386_85 | High light scatter reticulocyte percentage of red cells | 3.000000e-16 |
| GCST90002387_211 | Immature fraction of reticulocytes | 6.000000e-18 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0008433 | pursuit maintenance gain measurement |
| EFO:0004528 | mean corpuscular hemoglobin concentration |
| EFO:0006501 | carotid plaque build |
| EFO:0007986 | reticulocyte count |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D018500 | Diabetes Insipidus, Nephrogenic | C12.050.351.968.419.135.500; C12.200.777.419.135.500; C12.950.419.135.500 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2390814 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs2298720 | SLC14A1 | 0.00 | 0 |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: transporter — SLC14 family of facilitative urea transporters
Most potent curated ligand interactions (3 total), top 3:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| compound 1a [PMID: 23597791] | Inhibition | 7.96 | pIC50 |
| compound E3 | Inhibition | 7.6 | pIC50 |
| compound 8ay [PMID: 29589443] | Inhibition | 5.7 | pIC50 |
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.96 | IC50 | 11 | nM | CHEMBL1394231 |
| 5.76 | IC50 | 1720 | nM | CHEMBL4454312 |
PubChem BioAssay actives
2 with measured affinity, of 3 total; 2 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 10-(4-ethylphenyl)sulfonyl-N-(thiophen-2-ylmethyl)-5-thia-1,8,11,12-tetrazatricyclo[7.3.0.02,6]dodeca-2(6),3,7,9,11-pentaen-7-amine | 752404: Inhibition of UT-B in human erythrocytes assessed as increase of hypotonic lysis | ic50 | 0.0110 | uM |
| 1-(3-amino-6-methylthieno[2,3-b]quinolin-2-yl)ethanone | 1551208: Inhibition of urea transporter B in human erythrocytes incubated for 6 mins by spectrophotometric analysis based erythrocyte lysis assay | ic50 | 1.7200 | uM |
CTD chemical–gene interactions
39 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression, increases expression, increases methylation | 4 |
| Estradiol | decreases expression, affects cotreatment | 2 |
| Nickel | decreases expression | 2 |
| Progesterone | affects cotreatment, decreases expression | 2 |
| Tetrachlorodibenzodioxin | increases expression | 2 |
| Aflatoxin B1 | increases expression, increases methylation | 2 |
| GSK-J4 | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| propionaldehyde | increases expression | 1 |
| bisphenol A | decreases expression | 1 |
| methylselenic acid | increases expression | 1 |
| cinnamaldehyde | increases expression | 1 |
| mancozeb | decreases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| zinc chromate | increases abundance, increases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| aflatoxin B2 | increases methylation | 1 |
| pentanal | increases expression | 1 |
| chromium hexavalent ion | increases abundance, increases expression | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| clothianidin | decreases expression | 1 |
| incobotulinumtoxinA | increases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Temozolomide | affects response to substance | 1 |
| Zoledronic Acid | decreases expression | 1 |
| Air Pollutants | increases expression, increases abundance | 1 |
| Carmustine | affects response to substance | 1 |
| Hydroxyurea | increases uptake | 1 |
| Malathion | decreases expression | 1 |
| Melphalan | decreases expression | 1 |
ChEMBL screening assays
3 unique, capped per target: 3 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2394862 | Binding | Inhibition of UT-B in human erythrocytes assessed as increase of hypotonic lysis | 1,1-Difluoroethyl-substituted triazolothienopyrimidines as inhibitors of a human urea transport protein (UT-B): new analogs and binding model. — Bioorg Med Chem Lett |
Clinical trials (associated diseases)
7 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05190744 | PHASE2 | COMPLETED | Probenecid (PB) to Treat Hereditary Nephrogenic Diabetes Insipidus (NDI), ADPKD Treated With Tolvaptan, and Severely Polyuric Patients With Previous Lithium Administration |
| NCT00478335 | Not specified | COMPLETED | Pharmacologic Treatment of Congenital Nephrogenic Diabetes Insipidus |
| NCT04939753 | Not specified | COMPLETED | Nephrogenic Diabetes Insipidus During Prolonged Sevoflurane Sedation in the ICU: a Retrospective Analysis |
| NCT05307042 | Not specified | UNKNOWN | Decline in Renal Concentration Ability in Lithium Treated Patients |
| NCT05687474 | Not specified | COMPLETED | Baby Detect : Genomic Newborn Screening |
| NCT06065852 | Not specified | RECRUITING | National Registry of Rare Kidney Diseases |
| NCT06604975 | Not specified | NOT_YET_RECRUITING | Arginin-stimulated Copeptin in Polyuria-polydipsia Syndrome in Children |
Related Atlas pages
- Associated diseases: nephrogenic diabetes insipidus
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): nephrogenic diabetes insipidus, urinary bladder carcinoma