SLC16A9
geneOn this page
Also known as FLJ43803MCT9
Summary
SLC16A9 (solute carrier family 16 member 9, HGNC:23520) is a protein-coding gene on chromosome 10q21.2, encoding Monocarboxylate transporter 9 (Q7RTY1). Extracellular pH-and Na(+)-sensitive low-affinity creatine transporter.
Enables carnitine transmembrane transporter activity and creatine transmembrane transporter activity. Involved in carnitine transmembrane transport; creatine transmembrane transport; and urate metabolic process. Located in plasma membrane.
Source: NCBI Gene 220963 — RefSeq curated summary.
At a glance
- GWAS associations: 28
- Clinical variants (ClinVar): 67 total
- MANE Select transcript:
NM_194298
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:23520 |
| Approved symbol | SLC16A9 |
| Name | solute carrier family 16 member 9 |
| Location | 10q21.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ43803, MCT9 |
| Ensembl gene | ENSG00000165449 |
| Ensembl biotype | protein_coding |
| OMIM | 614242 |
| Entrez | 220963 |
Gene structure
Transcript identifiers
Ensembl transcripts: 22 — 21 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000395347, ENST00000395348, ENST00000490066, ENST00000881708, ENST00000881709, ENST00000881710, ENST00000881711, ENST00000881712, ENST00000881713, ENST00000881714, ENST00000881715, ENST00000881716, ENST00000881717, ENST00000881718, ENST00000881719, ENST00000936198, ENST00000936199, ENST00000947927, ENST00000947928, ENST00000947929, ENST00000947930, ENST00000947931
RefSeq mRNA: 6 — MANE Select: NM_194298
NM_001323977, NM_001323978, NM_001323979, NM_001323980, NM_001323981, NM_194298
CCDS: CCDS7256
Canonical transcript exons
ENST00000395348 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001134378 | 59653675 | 59654589 |
| ENSE00001381348 | 59672770 | 59672913 |
| ENSE00001391372 | 59664227 | 59664322 |
| ENSE00001521427 | 59684096 | 59684327 |
| ENSE00001521430 | 59709479 | 59709850 |
| ENSE00003719961 | 59650764 | 59652950 |
Expression profiles
Bgee: expression breadth ubiquitous, 196 present calls, max score 99.91.
FANTOM5 (CAGE): breadth broad, TPM avg 1.9814 / max 71.5713, expressed in 645 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 109468 | 1.1593 | 451 |
| 109466 | 0.5837 | 315 |
| 109467 | 0.1626 | 86 |
| 109459 | 0.0759 | 43 |
Top tissues by expression
241 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| kidney epithelium | UBERON:0004819 | 99.91 | gold quality |
| adrenal tissue | UBERON:0018303 | 98.34 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 98.00 | gold quality |
| adrenal cortex | UBERON:0001235 | 97.89 | gold quality |
| right adrenal gland | UBERON:0001233 | 97.79 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 97.79 | gold quality |
| left adrenal gland | UBERON:0001234 | 97.71 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 97.24 | gold quality |
| adrenal gland | UBERON:0002369 | 96.56 | gold quality |
| adult organism | UBERON:0007023 | 94.05 | gold quality |
| colonic mucosa | UBERON:0000317 | 92.59 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 92.11 | gold quality |
| ileal mucosa | UBERON:0000331 | 91.24 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 91.23 | gold quality |
| kidney | UBERON:0002113 | 89.81 | gold quality |
| gingiva | UBERON:0001828 | 89.52 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 89.46 | gold quality |
| gingival epithelium | UBERON:0001949 | 89.15 | gold quality |
| ventricular zone | UBERON:0003053 | 88.90 | gold quality |
| oviduct epithelium | UBERON:0004804 | 87.94 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 87.48 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 87.37 | gold quality |
| cerebellar cortex | UBERON:0002129 | 87.18 | gold quality |
| fallopian tube | UBERON:0003889 | 87.18 | gold quality |
| cerebellum | UBERON:0002037 | 86.47 | gold quality |
| rectum | UBERON:0001052 | 85.99 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 85.91 | gold quality |
| bronchial epithelial cell | CL:0002328 | 85.88 | gold quality |
| left ovary | UBERON:0002119 | 85.38 | gold quality |
| right uterine tube | UBERON:0001302 | 85.25 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-131882 | yes | 2032.79 |
| E-CURD-119 | yes | 2014.31 |
| E-ANND-3 | yes | 6.08 |
| E-CURD-135 | no | 1365.49 |
| E-GEOD-124858 | no | 77.97 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
132 targeting SLC16A9, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-4682 | 100.00 | 68.89 | 1258 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-LET-7A-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7B-5P | 99.98 | 72.31 | 1790 |
| HSA-LET-7C-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7E-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7F-5P | 99.98 | 72.56 | 1784 |
| HSA-LET-7G-5P | 99.98 | 72.37 | 1784 |
| HSA-LET-7I-5P | 99.98 | 72.37 | 1788 |
| HSA-MIR-98-5P | 99.98 | 72.33 | 1787 |
| HSA-MIR-3617-3P | 99.98 | 67.86 | 918 |
| HSA-MIR-485-3P | 99.98 | 70.68 | 1585 |
| HSA-MIR-539-3P | 99.98 | 70.74 | 1616 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-LET-7D-5P | 99.96 | 71.76 | 1632 |
| HSA-MIR-4458 | 99.96 | 71.64 | 1650 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
Literature-anchored findings (GeneRIF, showing 7)
- it has a possible physiological role in urate excretion from human intestinal epithelial cells. (PMID:23990105)
- Strong association of SLC16A9 gene variation with HBsAg loss was identified in Chronic Hepatitis B patients treated with peginterferon and adefovir. (PMID:24824278)
- Molecular characterization of the orphan transporter SLC16A9, an extracellular pH- and Na(+)-sensitive creatine transporter. (PMID:31784090)
- SLC1A1, SLC16A9, and CNTN3 Are Potential Biomarkers for the Occurrence of Colorectal Cancer. (PMID:32566650)
- Monocarboxylate transporter 9 (MCT9) is down-regulated in renal cell carcinoma. (PMID:33555501)
- The tissue expression of MCT3, MCT8, and MCT9 genes in women with breast cancer. (PMID:34097251)
- Molecular characteristic analysis of single-nucleotide polymorphisms in SLC16A9/hMCT9. (PMID:37879602)
Cross-species orthologs
18 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | slc16a9a | ENSDARG00000013926 |
| danio_rerio | slc16a9b | ENSDARG00000104687 |
| mus_musculus | Slc16a9 | ENSMUSG00000037762 |
| rattus_norvegicus | Slc16a9 | ENSRNOG00000049063 |
| drosophila_melanogaster | Mct1 | FBGN0023549 |
| drosophila_melanogaster | CG14196 | FBGN0031002 |
| drosophila_melanogaster | CG8051 | FBGN0031012 |
| drosophila_melanogaster | Sln | FBGN0033657 |
| drosophila_melanogaster | CG8468 | FBGN0033913 |
| drosophila_melanogaster | Targ | FBGN0033955 |
| drosophila_melanogaster | CG13907 | FBGN0035173 |
| drosophila_melanogaster | out | FBGN0259834 |
| caenorhabditis_elegans | WBGENE00003986 | |
| caenorhabditis_elegans | WBGENE00010834 | |
| caenorhabditis_elegans | WBGENE00015273 | |
| caenorhabditis_elegans | WBGENE00015676 | |
| caenorhabditis_elegans | WBGENE00020168 | |
| caenorhabditis_elegans | WBGENE00021227 |
Paralogs (13): SLC16A8 (ENSG00000100156), SLC16A6 (ENSG00000108932), SLC16A10 (ENSG00000112394), SLC16A7 (ENSG00000118596), SLC16A3 (ENSG00000141526), SLC16A2 (ENSG00000147100), SLC16A12 (ENSG00000152779), SLC16A1 (ENSG00000155380), SLC16A14 (ENSG00000163053), SLC16A4 (ENSG00000168679), SLC16A5 (ENSG00000170190), SLC16A11 (ENSG00000174326), SLC16A13 (ENSG00000174327)
Protein
Protein identifiers
Monocarboxylate transporter 9 — Q7RTY1 (reviewed: Q7RTY1)
Alternative names: Solute carrier family 16 member 9
All UniProt accessions (1): Q7RTY1
UniProt curated annotations — full annotation on UniProt →
Function. Extracellular pH-and Na(+)-sensitive low-affinity creatine transporter. Also functions as a pH-independent carnitine efflux transporter.
Subcellular location. Cell membrane.
Activity regulation. 4-guanidinobutyrate and guanidinoethyl sulfonate inhibit the transport activity.
Similarity. Belongs to the major facilitator superfamily. Monocarboxylate porter (TC 2.A.1.13) family.
RefSeq proteins (6): NP_001310906, NP_001310907, NP_001310908, NP_001310909, NP_001310910, NP_919274* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR011701 | MFS | Family |
| IPR020846 | MFS_dom | Domain |
| IPR030767 | MCT9 | Family |
| IPR036259 | MFS_trans_sf | Homologous_superfamily |
| IPR050327 | Proton-linked_MCT | Family |
Pfam: PF07690
Catalyzed reactions (Rhea), 2 shown:
- (R)-carnitine(in) = (R)-carnitine(out) (RHEA:34959)
- creatine(in) = creatine(out) (RHEA:73043)
UniProt features (18 total): transmembrane region 12, sequence variant 3, topological domain 2, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q7RTY1-F1 | 76.70 | 0.41 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 137 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_MCMV_INFECTION_DN, GSE45365_NK_CELL_VS_CD8A_DC_MCMV_INFECTION_UP, GOBP_MODIFIED_AMINO_ACID_TRANSPORT, chr10q21, ACEVEDO_LIVER_CANCER_WITH_H3K27ME3_UP, GOBP_AMINO_ACID_BETAINE_TRANSPORT, GOBP_ORGANIC_ACID_TRANSPORT, GOBP_QUATERNARY_AMMONIUM_GROUP_TRANSPORT, GOBP_ORGANIC_ANION_TRANSPORT, GOBP_MONOCARBOXYLIC_ACID_TRANSPORT, GOBP_ORGANIC_CATION_TRANSPORT, GOBP_URATE_METABOLIC_PROCESS, CART1_01, GOBP_PURINE_CONTAINING_COMPOUND_METABOLIC_PROCESS, GRADE_COLON_AND_RECTAL_CANCER_DN
GO Biological Process (5): creatine transmembrane transport (GO:0015881), urate metabolic process (GO:0046415), carnitine transmembrane transport (GO:1902603), carboxylic acid transmembrane transport (GO:1905039), transmembrane transport (GO:0055085)
GO Molecular Function (6): creatine transmembrane transporter activity (GO:0005308), monocarboxylic acid transmembrane transporter activity (GO:0008028), carnitine transmembrane transporter activity (GO:0015226), symporter activity (GO:0015293), protein binding (GO:0005515), transmembrane transporter activity (GO:0022857)
GO Cellular Component (2): plasma membrane (GO:0005886), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| transmembrane transport | 3 |
| monocarboxylic acid transport | 2 |
| modified amino acid transmembrane transporter activity | 2 |
| modified amino acid transport | 1 |
| carboxylic acid transmembrane transport | 1 |
| small molecule metabolic process | 1 |
| purine-containing compound metabolic process | 1 |
| carnitine transport | 1 |
| carboxylic acid transport | 1 |
| transport | 1 |
| cellular process | 1 |
| monocarboxylic acid transmembrane transporter activity | 1 |
| creatine transmembrane transport | 1 |
| carboxylic acid transmembrane transporter activity | 1 |
| quaternary ammonium group transmembrane transporter activity | 1 |
| carnitine transmembrane transport | 1 |
| secondary active transmembrane transporter activity | 1 |
| binding | 1 |
| transporter activity | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
784 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SLC16A9 | SLC22A11 | Q9NSA0 | 757 |
| SLC16A9 | SLC17A1 | Q14916 | 737 |
| SLC16A9 | SLC2A9 | Q9NRM0 | 730 |
| SLC16A9 | SLC22A12 | Q96S37 | 729 |
| SLC16A9 | SLC17A3 | O00476 | 713 |
| SLC16A9 | CARMIL1 | Q5VZK9 | 667 |
| SLC16A9 | PDZK1 | Q5T2W1 | 667 |
| SLC16A9 | SLC17A4 | Q9Y2C5 | 657 |
| SLC16A9 | INHBC | P55103 | 545 |
| SLC16A9 | SLC22A5 | O76082 | 544 |
| SLC16A9 | ABCG2 | Q9UNQ0 | 536 |
| SLC16A9 | SLC22A4 | Q9H015 | 502 |
| SLC16A9 | SLC22A6 | Q4U2R8 | 481 |
| SLC16A9 | SLC23A3 | Q6PIS1 | 470 |
| SLC16A9 | A1CF | Q9NQ94 | 460 |
IntAct
12 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| EIF4A2 | SLC16A9 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KLC4 | SLC16A9 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SLC16A9 | MRPL11 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SLC16A9 | EIF4A2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SLC16A9 | KLC4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MRPL11 | SLC16A9 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SLC16A9 | PB1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| SLC16A9 | RIOK3 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (20): SLC16A9 (Two-hybrid), SLC16A9 (Two-hybrid), SLC16A9 (Two-hybrid), SLC16A9 (Affinity Capture-RNA), SLC16A9 (Affinity Capture-RNA), ARL13B (Affinity Capture-MS), CHCHD3 (Affinity Capture-MS), CLCC1 (Affinity Capture-MS), EPHB2 (Affinity Capture-MS), HECTD1 (Affinity Capture-MS), HIGD1A (Affinity Capture-MS), IFNGR1 (Affinity Capture-MS), MRS2 (Affinity Capture-MS), PTPN2 (Affinity Capture-MS), RIOK3 (Affinity Capture-MS)
ESM2 similar proteins: A0A6I8PMZ8, A1Z7R6, A4IHK6, A4QN56, A7Y2X0, A9JTG4, B1AT66, B2RXV4, F5H094, M0RCI4, O15403, O75387, P34711, P58295, P81721, Q08280, Q08C75, Q0VCM6, Q497L8, Q5BIZ0, Q5R5M4, Q5RCN7, Q5RF58, Q5ZJU0, Q5ZJZ4, Q68EU6, Q6A4L1, Q6PDC8, Q761V0, Q7RTX9, Q7RTY1, Q7SXB7, Q7TM99, Q7TMR7, Q86UG4, Q8BSM7, Q8C0X7, Q8CGA3, Q8K1C7, Q8N370
Diamond homologs: A0LNN5, D4A734, G5E8K6, M0RCI4, O15375, O15427, O35308, O35440, O35910, O60669, O70451, O70461, O95907, P53985, P53986, P53987, P53988, P57787, P57788, Q03064, Q17QR6, Q3MHW6, Q503M4, Q5NC32, Q5R5M4, Q5ZJU0, Q63344, Q6GM59, Q6P2X9, Q6ZSM3, Q7RTY0, Q7RTY1, Q7TM99, Q8BGC3, Q8NCK7, Q90632, A0A2U8U2M7, G8XYX6, O70324, P36021
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
67 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 54 |
| Likely benign | 2 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2152 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:59672827:A:C | donor_gain | 1.0000 |
| 10:59684094:A:AC | donor_gain | 1.0000 |
| 10:59684095:C:CC | donor_gain | 1.0000 |
| 10:59684095:CTTG:C | donor_gain | 1.0000 |
| 10:59664222:TATAC:T | donor_loss | 0.9900 |
| 10:59664223:ATACC:A | donor_loss | 0.9900 |
| 10:59664224:TA:T | donor_loss | 0.9900 |
| 10:59664225:A:C | donor_loss | 0.9900 |
| 10:59664226:C:CA | donor_loss | 0.9900 |
| 10:59664227:C:A | donor_loss | 0.9900 |
| 10:59664321:ACC:A | acceptor_loss | 0.9900 |
| 10:59664323:CT:C | acceptor_loss | 0.9900 |
| 10:59664324:T:A | acceptor_loss | 0.9900 |
| 10:59672911:GACC:G | acceptor_loss | 0.9900 |
| 10:59672912:ACC:A | acceptor_loss | 0.9900 |
| 10:59672914:CT:C | acceptor_loss | 0.9900 |
| 10:59684089:CACTT:C | donor_loss | 0.9900 |
| 10:59684090:ACTTA:A | donor_loss | 0.9900 |
| 10:59684091:CTTAC:C | donor_loss | 0.9900 |
| 10:59684092:TTAC:T | donor_loss | 0.9900 |
| 10:59684093:TACTT:T | donor_loss | 0.9900 |
| 10:59684094:AC:A | donor_loss | 0.9900 |
| 10:59684095:C:A | donor_loss | 0.9900 |
| 10:59684119:G:A | donor_gain | 0.9900 |
| 10:59684210:C:CT | acceptor_gain | 0.9900 |
| 10:59684210:C:T | acceptor_gain | 0.9900 |
| 10:59714390:CTA:C | donor_gain | 0.9900 |
| 10:59735925:TTTAC:T | donor_loss | 0.9900 |
| 10:59735926:TTA:T | donor_loss | 0.9900 |
| 10:59735927:TACCT:T | donor_loss | 0.9900 |
AlphaMissense
3296 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:59654582:G:C | S148R | 0.998 |
| 10:59654582:G:T | S148R | 0.998 |
| 10:59654584:T:G | S148R | 0.998 |
| 10:59672822:G:C | S96R | 0.998 |
| 10:59672822:G:T | S96R | 0.998 |
| 10:59672824:T:G | S96R | 0.998 |
| 10:59672855:A:C | S85R | 0.998 |
| 10:59672855:A:T | S85R | 0.998 |
| 10:59672857:T:G | S85R | 0.998 |
| 10:59654589:C:T | G146D | 0.997 |
| 10:59664267:A:C | F132L | 0.997 |
| 10:59664267:A:T | F132L | 0.997 |
| 10:59664269:A:G | F132L | 0.997 |
| 10:59684174:A:G | W40R | 0.997 |
| 10:59684174:A:T | W40R | 0.997 |
| 10:59684209:C:T | G28E | 0.997 |
| 10:59653702:C:G | G442R | 0.996 |
| 10:59653702:C:T | G442R | 0.996 |
| 10:59653809:C:T | G406E | 0.996 |
| 10:59653810:C:G | G406R | 0.996 |
| 10:59653810:C:T | G406R | 0.996 |
| 10:59653960:C:G | G356R | 0.996 |
| 10:59654503:C:G | G175R | 0.996 |
| 10:59654577:C:T | G150D | 0.996 |
| 10:59654578:C:G | G150R | 0.996 |
| 10:59672912:A:C | S66R | 0.996 |
| 10:59672912:A:T | S66R | 0.996 |
| 10:59684096:T:G | S66R | 0.996 |
| 10:59684137:G:T | A52D | 0.996 |
| 10:59653701:C:T | G442E | 0.995 |
dbSNP variants (sampled 300 via entrez): RS1000126693 (10:59660772 A>G), RS1000136761 (10:59682920 A>G), RS1000144812 (10:59703609 G>T), RS1000189746 (10:59689853 G>A), RS1000199639 (10:59689653 C>T), RS1000266709 (10:59709642 C>A,G,T), RS1000298269 (10:59651254 G>A), RS1000327246 (10:59650958 A>G), RS1000405245 (10:59695505 A>G), RS1000422252 (10:59672453 A>G), RS1000466590 (10:59683294 C>T), RS1000537060 (10:59688094 C>T), RS1000563039 (10:59679993 T>A), RS1000698017 (10:59701822 T>C), RS1000750236 (10:59701359 A>T)
Disease associations
OMIM: gene MIM:614242 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
28 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000418_1 | Uric acid levels | 1.000000e-08 |
| GCST001217_37 | Metabolic traits | 3.000000e-14 |
| GCST001791_32 | Urate levels | 2.000000e-28 |
| GCST002307_1 | Systolic blood pressure (alcohol consumption interaction) | 1.000000e-08 |
| GCST002307_10 | Systolic blood pressure (alcohol consumption interaction) | 4.000000e-08 |
| GCST002308_9 | Mean arterial pressure (alcohol consumption interaction) | 9.000000e-07 |
| GCST002932_31 | Manganese levels | 2.000000e-06 |
| GCST004866_1 | Alopecia areata | 6.000000e-06 |
| GCST005648_7 | Serum metabolite concentrations in chronic kidney disease | 3.000000e-15 |
| GCST005650_210 | Serum metabolite ratios in chronic kidney disease | 3.000000e-12 |
| GCST006249_33 | Serum metabolite levels | 1.000000e-14 |
| GCST006631_9 | Nicotine dependence and major depression (severity of comorbidity) | 5.000000e-06 |
| GCST007733_43 | Serum uric acid levels | 3.000000e-17 |
| GCST008970_2 | Gout | 2.000000e-16 |
| GCST008971_128 | Urate levels | 2.000000e-66 |
| GCST008972_180 | Urate levels | 2.000000e-77 |
| GCST008972_95 | Urate levels | 1.000000e-10 |
| GCST009391_1650 | Metabolite levels | 6.000000e-07 |
| GCST010242_205 | HDL cholesterol levels | 6.000000e-09 |
| GCST010244_162 | Triglyceride levels | 2.000000e-11 |
| GCST011436_3 | Total carotid plaque area (excess vs minimal atherosclerosis) | 7.000000e-06 |
| GCST012020_411 | Serum metabolite levels | 2.000000e-12 |
| GCST012020_412 | Serum metabolite levels | 5.000000e-11 |
| GCST012020_413 | Serum metabolite levels | 3.000000e-48 |
| GCST012338_25 | Gout | 7.000000e-20 |
| GCST90000025_431 | Appendicular lean mass | 1.000000e-13 |
| GCST90002384_189 | Hemoglobin | 1.000000e-09 |
| GCST90002401_211 | Platelet distribution width | 7.000000e-16 |
EFO canonical traits (15, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004761 | uric acid measurement |
| EFO:0004725 | metabolite measurement |
| EFO:0004531 | urate measurement |
| EFO:0004329 | alcohol drinking |
| EFO:0006335 | systolic blood pressure |
| EFO:0006340 | mean arterial pressure |
| EFO:0007006 | depressive symptom measurement |
| EFO:0009262 | nicotine dependence symptom count |
| EFO:0010469 | carnitine measurement |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0004530 | triglyceride measurement |
| EFO:0006501 | carotid plaque build |
| EFO:0004980 | appendicular lean mass |
| EFO:0004509 | hemoglobin measurement |
| EFO:0007984 | platelet component distribution width |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: transporter — SLC16 family of monocarboxylate transporters
CTD chemical–gene interactions
53 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| trichostatin A | affects cotreatment, decreases expression | 3 |
| (+)-JQ1 compound | decreases expression | 3 |
| bisphenol A | affects cotreatment, increases methylation, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| Aflatoxin B1 | decreases methylation, increases expression | 2 |
| Cadmium Chloride | decreases expression, increases abundance | 2 |
| aristolochic acid I | decreases expression | 1 |
| testosterone undecanoate | affects cotreatment, decreases expression | 1 |
| mono-(2-ethylhexyl)phthalate | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | affects expression | 1 |
| sodium arsenite | affects cotreatment, increases abundance, increases expression | 1 |
| manganese chloride | increases expression, affects cotreatment, increases abundance | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression | 1 |
| beta-methylcholine | affects expression | 1 |
| avobenzone | decreases expression | 1 |
| perfluoro-n-nonanoic acid | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| licochalcone B | decreases expression | 1 |
| NSC 689534 | affects binding, decreases expression | 1 |
| Temozolomide | increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Leflunomide | increases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Ethanol | increases expression | 1 |
| Arsenic | affects cotreatment, increases abundance, increases expression | 1 |
| Benzo(a)pyrene | affects methylation, increases methylation | 1 |
| Cadmium | decreases expression, increases abundance | 1 |
Cellosaurus cell lines
5 cell lines: 4 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D4DT | HEK-SLC16A9-KO-c4 | Transformed cell line | Female |
| CVCL_D4IB | HCT116-SLC16A9-KO-c10 | Cancer cell line | Male |
| CVCL_D4IC | HCT116-SLC16A9-KO-c7 | Cancer cell line | Male |
| CVCL_TL70 | HAP1 SLC16A9 (-) 1 | Cancer cell line | Male |
| CVCL_XS89 | HAP1 SLC16A9 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): alopecia areata, gout