SLC1A2-AS2

Summary

SLC1A2-AS2 (SLC1A2 antisense RNA 2, HGNC:40535) is a long non-coding RNA gene on chromosome 11p13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40535
Approved symbol	SLC1A2-AS2
Name	SLC1A2 antisense RNA 2
Location	11p13
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC090625.2
Ensembl gene	ENSG00000255542
Ensembl biotype	lncRNA
Entrez	128385377
RNAcentral	URS0000169F31 — lncRNA, 518 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000534165, ENST00000844059, ENST00000844060

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000534165 — 2 exons

Exon	Start	End
ENSE00002157684	35419057	35419107
ENSE00002172315	35420536	35421002

Expression profiles

Bgee: expression breadth broad, 94 present calls, max score 67.64.

Top tissues by expression

94 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cortical plate	UBERON:0005343	67.64	gold quality
ventricular zone	UBERON:0003053	67.32	gold quality
stromal cell of endometrium	CL:0002255	66.04	gold quality
ganglionic eminence	UBERON:0004023	64.18	gold quality
caudate nucleus	UBERON:0001873	60.78	gold quality
prefrontal cortex	UBERON:0000451	60.33	gold quality
putamen	UBERON:0001874	60.11	gold quality
primary visual cortex	UBERON:0002436	58.75	gold quality
nucleus accumbens	UBERON:0001882	58.67	gold quality
temporal lobe	UBERON:0001871	58.44	gold quality
amygdala	UBERON:0001876	58.39	gold quality
frontal cortex	UBERON:0001870	58.01	gold quality
superior frontal gyrus	UBERON:0002661	57.76	gold quality
cerebral cortex	UBERON:0000956	57.19	gold quality
anterior cingulate cortex	UBERON:0009835	57.02	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	56.47	gold quality
Ammon’s horn	UBERON:0001954	56.28	gold quality
brain	UBERON:0000955	56.25	gold quality
endometrium	UBERON:0001295	56.07	gold quality
right frontal lobe	UBERON:0002810	55.54	gold quality
lymph node	UBERON:0000029	55.49	gold quality
placenta	UBERON:0001987	55.49	gold quality
liver	UBERON:0002107	54.81	gold quality
Brodmann (1909) area 9	UBERON:0013540	53.85	gold quality
hypothalamus	UBERON:0001898	53.71	gold quality
corpus callosum	UBERON:0002336	53.38	gold quality
right testis	UBERON:0004534	53.15	gold quality
blood	UBERON:0000178	52.99	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.95	gold quality
islet of Langerhans	UBERON:0000006	52.28	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.