SLC20A1-DT

Summary

SLC20A1-DT (SLC20A1 divergent transcript, HGNC:55651) is a long non-coding RNA gene on chromosome 2q14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55651
Approved symbol	SLC20A1-DT
Name	SLC20A1 divergent transcript
Location	2q14.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000237753
Ensembl biotype	lncRNA
Entrez	400999
RNAcentral	URS000075BF6B — lncRNA, 514 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000457336, ENST00000661604, ENST00000667014, ENST00000671122, ENST00000840902, ENST00000840903, ENST00000840904, ENST00000840905, ENST00000840906, ENST00000840907, ENST00000840908, ENST00000840909, ENST00000840910

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000457336 — 5 exons

Exon	Start	End
ENSE00001671230	112642083	112642189
ENSE00001730496	112643179	112643293
ENSE00001776655	112643959	112644015
ENSE00004264712	112644099	112645737
ENSE00004264719	112641823	112641982

Expression profiles

Bgee: expression breadth ubiquitous, 160 present calls, max score 80.00.

Top tissues by expression

246 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
gastrocnemius	UBERON:0001388	80.00	gold quality
granulocyte	CL:0000094	79.39	gold quality
muscle of leg	UBERON:0001383	79.23	gold quality
tibialis anterior	UBERON:0001385	77.50	silver quality
sperm	CL:0000019	77.36	gold quality
hindlimb stylopod muscle	UBERON:0004252	77.31	gold quality
muscle layer of sigmoid colon	UBERON:0035805	76.69	gold quality
apex of heart	UBERON:0002098	76.51	gold quality
descending thoracic aorta	UBERON:0002345	76.28	gold quality
lower esophagus muscularis layer	UBERON:0035833	75.41	gold quality
lower esophagus	UBERON:0013473	75.34	gold quality
ascending aorta	UBERON:0001496	75.01	gold quality
thoracic aorta	UBERON:0001515	74.98	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	73.94	silver quality
ileal mucosa	UBERON:0000331	73.88	gold quality
right coronary artery	UBERON:0001625	73.80	gold quality
left coronary artery	UBERON:0001626	73.43	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	73.32	gold quality
aorta	UBERON:0000947	72.94	gold quality
right lobe of liver	UBERON:0001114	72.86	gold quality
leukocyte	CL:0000738	72.67	gold quality
monocyte	CL:0000576	72.61	gold quality
mucosa of transverse colon	UBERON:0004991	71.90	gold quality
popliteal artery	UBERON:0002250	71.75	gold quality
tibial artery	UBERON:0007610	71.74	gold quality
coronary artery	UBERON:0001621	71.66	gold quality
heart left ventricle	UBERON:0002084	70.70	gold quality
right atrium auricular region	UBERON:0006631	70.70	gold quality
right frontal lobe	UBERON:0002810	70.66	gold quality
left testis	UBERON:0004533	70.58	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.79

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.