SLC22A12

gene
On this page

Also known as OAT4LRSTURAT1hURAT1UAT

Summary

SLC22A12 (solute carrier family 22 member 12, HGNC:17989) is a protein-coding gene on chromosome 11q13.1, encoding Solute carrier family 22 member 12 (Q96S37). Electroneutral antiporter that translocates urate across the apical membrane of proximal tubular cells in exchange for monovalent organic or inorganic anions.

The protein encoded by this gene is a member of the organic anion transporter (OAT) family, and it acts as a urate transporter to regulate urate levels in blood. This protein is an integral membrane protein primarily found in epithelial cells of the proximal tubule of the kidney. An elevated level of serum urate, hyperuricemia, is associated with increased incidences of gout, and mutations in this gene cause renal hypouricemia type 1. Alternative splicing results in multiple transcript variants.

Source: NCBI Gene 116085 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): hypouricemia, renal 1 (Strong, GenCC) — +1 more curated relationship
  • GWAS associations: 24
  • Clinical variants (ClinVar): 337 total — 11 pathogenic, 9 likely-pathogenic
  • Phenotypes (HPO): 27
  • Druggable target: yes — 13 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_144585

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:17989
Approved symbolSLC22A12
Namesolute carrier family 22 member 12
Location11q13.1
Locus typegene with protein product
StatusApproved
AliasesOAT4L, RST, URAT1, hURAT1, UAT
Ensembl geneENSG00000197891
Ensembl biotypeprotein_coding
OMIM607096
Entrez116085

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 protein_coding

ENST00000336464, ENST00000377567, ENST00000377572, ENST00000377574, ENST00000473690

RefSeq mRNA: 4 — MANE Select: NM_144585 NM_001276326, NM_001276327, NM_144585, NM_153378

CCDS: CCDS60835, CCDS60836, CCDS8075

Canonical transcript exons

ENST00000377574 — 10 exons

ExonStartEnd
ENSE000011200176459967664599890
ENSE000011200186460036764600475
ENSE000011724186459880864598923
ENSE000011724246459851664598639
ENSE000013405426460073564600938
ENSE000017062056459340564593559
ENSE000034872226459363564593803
ENSE000035886786459277964592882
ENSE000038476056460148864602344
ENSE000038489556459122064591958

Expression profiles

Bgee: expression breadth broad, 30 present calls, max score 98.60.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1637 / max 124.5585, expressed in 5 samples.

FANTOM5 promoters (5 alternative TSS)

Promoter IDTPM avgSamples expressed
1149790.07274
1149810.04273
1149800.04203
1149780.00503
1149770.00131

Top tissues by expression

243 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
kidney epitheliumUBERON:000481998.60gold quality
adult mammalian kidneyUBERON:000008292.19gold quality
kidneyUBERON:000211383.71gold quality
left ventricle myocardiumUBERON:000656681.58gold quality
cardiac muscle of right atriumUBERON:000337981.06gold quality
cortex of kidneyUBERON:000122577.28gold quality
parotid glandUBERON:000183175.04gold quality
nasal cavity epitheliumUBERON:000538474.72gold quality
renal medullaUBERON:000036274.50gold quality
epithelial cell of pancreasCL:000008374.26gold quality
myocardiumUBERON:000234972.21gold quality
vena cavaUBERON:000408769.72gold quality
quadriceps femorisUBERON:000137768.88gold quality
adult organismUBERON:000702368.87gold quality
cerebellar vermisUBERON:000472068.70gold quality
vastus lateralisUBERON:000137968.46gold quality
metanephros cortexUBERON:001053368.19gold quality
metanephrosUBERON:000008165.96gold quality
lateral nuclear group of thalamusUBERON:000273664.94gold quality
upper arm skinUBERON:000426364.24gold quality
mucosa of paranasal sinusUBERON:000503063.90gold quality
skeletal muscle tissue of biceps brachiiUBERON:000450263.48gold quality
layer of synovial tissueUBERON:000761662.76gold quality
biceps brachiiUBERON:000150762.72gold quality
lateral globus pallidusUBERON:000247662.27gold quality
deltoidUBERON:000147661.97gold quality
secondary oocyteCL:000065561.87gold quality
subthalamic nucleusUBERON:000190661.56gold quality
dorsal plus ventral thalamusUBERON:000189761.52gold quality
heart right ventricleUBERON:000208061.27gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-ANND-3yes5.49

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): HNF1A, HNF1B

miRNA regulators (miRDB)

35 targeting SLC22A12, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-6870-5P99.9968.552115
HSA-MIR-10401-5P99.9965.79948
HSA-MIR-6721-5P99.9368.922981
HSA-MIR-579-3P99.8671.663628
HSA-MIR-444799.8567.812900
HSA-MIR-664B-3P99.8471.653590
HSA-MIR-6756-5P99.8267.972466
HSA-MIR-442999.7769.622111
HSA-MIR-6766-5P99.6867.702325
HSA-MIR-875-3P99.6369.472548
HSA-MIR-6751-5P99.5664.991145
HSA-MIR-1207-5P99.4969.112983
HSA-MIR-127599.4767.902749
HSA-MIR-391199.3866.951087
HSA-MIR-6803-5P99.1963.901026
HSA-MIR-7109-5P99.1866.131057
HSA-MIR-4763-3P99.1067.832649
HSA-MIR-3127-3P98.9467.341055
HSA-MIR-6756-3P98.9466.791104
HSA-MIR-426098.7865.37848
HSA-MIR-330-5P98.7367.631788
HSA-MIR-16-1-3P98.7069.231538
HSA-MIR-2467-3P98.6567.181969
HSA-MIR-6887-5P98.5668.491295
HSA-MIR-6795-5P98.5268.511277
HSA-MIR-6804-5P98.3965.771084
HSA-MIR-32698.2566.441565
HSA-MIR-939-5P97.1065.801579
HSA-MIR-134-3P96.8366.221001
HSA-MIR-1343-5P96.4866.061506

Literature-anchored findings (GeneRIF, showing 40)

  • Molecular identification of a renal urate anion exchanger that regulates blood urate levels (PMID:12024214)
  • PDZK1 plays a role in regulating the functional activity of URAT1-mediated urate transport in the apical membrane of renal proximal tubules. (PMID:15304510)
  • SLC22A12 is a major gene for hypouricemia but not hyperuricemia in Japanese. (PMID:15327384)
  • heterozygous mutations of the URAT1 gene (Q297X and IVS2+1G>A) may be recurrent mutations of the URAT1 gene in a Japanese population (PMID:15772829)
  • G774A mutation in SCL22A12 gene serves as a suppressing factor for development of gout. Mutation decreased uric acid levels. (PMID:16059895)
  • A single nucleotide polymorphism (SNP) in the urate transporter gene SLC22CA12 was found to be associated with elevated serum uric acid levels (PMID:16920156)
  • Report of patients with heterozygous and homozygous mutations in the hURAT1 gene in a family with renal hypouricemia associated with exercise-induced acute renal failure. (PMID:17445045)
  • Functioning as an antiporter, hURAT1 mediates the uptake of urate from the lumen into proximal tubule cells in exchange for organic and inorganic anions. (PMID:17891408)
  • This study was undertaken to elucidate whether SLC22A12 gene mutations are responsible for low serum uric acid levels in Greek people. No previously reported mutation of URAT1 was associated with primary renal hypouricaemia in Greek subjects. (PMID:17891652)
  • is a urate anion exchanger regulating blood urate levels and proposed to be involved in the multimolecular complex “transportsome” that allows the cooperation of multiple transporters. (PMID:18409511)
  • The G774A mutation in the SLC22A12 gene encoding URAT1 ( urate anion exchanger 1 ) predominates in Japanese renal hypouricemia. (PMID:18492088)
  • losartan inhibited URAT1 and thereby it lowered Sur levels in hypertensive patients. (PMID:18670416)
  • The in vivo role of GLUT9 is supported by the fact that a renal hypouricemia patient without any mutations in SLC22A12 was found to have a missense mutation in SLC2A9, which reduced urate transport activity in vitro. (PMID:18701466)
  • polymorphism of the SLC22A12 gene may be involved in renal urate handling and the concentration of serum uric acid (PMID:18824160)
  • Serial changes in serum levels of reactive oxygen species and antioxidant potentials were demonstrated after exercise stress testing in a girl with idiopathic renal hypouricemia due to a mutation in SLC22A12. (PMID:18936980)
  • Prevalence of hypouricaemia and SLC22A12 mutations in healthy Korean subjects. (PMID:19019168)
  • Single nucleotide polymorphism rs475688 within SLC22A12 gene contributed to the development of gout under the hypothesis of common disease/common variant. (PMID:19762362)
  • There are multiple genetic variants within or near hURAT1 that are associated with susceptibility to hyperuricaemia in Han Chinese, including a novel SNP located in intron 3. (PMID:19833602)
  • replicated the associations of the SLC2A9 and ABCG2 polymorphisms with serum UA and clarified the prognostic significance of the SLC22A12, SLC2A9 and ABCG2 genotypes for the development of hyperuricemia (PMID:20714133)
  • URAT1 mutations cause renal hypouricemia type 1. (PMID:21148271)
  • polymorphisms of the SLC22A12 gene were associated with primary hyperuricemia (PMID:21154327)
  • The SNP of 11G > A in the intron 3 of hURAT1 gene was apparently associated with hyperuricemia in Han Chinese. (PMID:21211204)
  • hURAT1 mediated a time- and dose-dependent uptake of orotate (K (m) 5.2 muM). (PMID:21350910)
  • Although SLC22A12 W258X was a determining genetic factor on SUA, SUA of those with WX genotype distributed widely from 0.8 mg/dL to 7.8 mg/dL. (PMID:21366895)
  • The novel G109T polymorphism of the SLC22A12 gene is related to serum uric acid level, but not to the development of metabolic syndrome. (PMID:21544634)
  • SLC22A12 258WX was more common among those with a lower serum uric acid concentration; this allele is known to cause hypouricemia (PMID:21614936)
  • two cases with the URAT1 gene, encoded by SLC22A12, found a homozygous mutation in exon 4 (PMID:21722610)
  • we identified and replicated one novel locus in association with serum urate levels and experimentally characterize the novel G65W variant in URAT1 as a functional allele. (PMID:21768215)
  • This data highlights the importance of the URAT1 renal urate transporter in determining serum urate concentrations and the clinical phenotypes. (PMID:22194875)
  • present study confirmed the existence of OAT1-4 and URAT1 in the salivary gland (PMID:22564045)
  • SLC22A12 polymorphisms are associated with obesity and metabolic syndrome in Caucasian hypertensive subjects. (PMID:22688828)
  • Genetic analysis detected no mutations in the SLC22A12/URAT1 gene, except for the previously reported silent polymorphisms rs 3825016, 11231825, 1630320, 7932775, and the intronic polymorphism rs 79866595. (PMID:22942308)
  • This report identifies a novel loss-of-function URAT1 mutations (c.151delG)which cause renal hypouricemia and renal dysfunction in two independent renal hypouricemia pedigrees. (PMID:23043931)
  • Our study is the first one in Turkish population and suggests that there is no association between primary gout disease and SLC22A12 gene polymorphisms. (PMID:23129426)
  • The strongest association was detected at SLC22A12 rs505802 for genetic loci and uric acid (p=2.4x10(-50)). (PMID:23238572)
  • The findings suggest that loss-of-function mutations in URAT1 cause renal hypouricemia via loss of uric acid absorption partly by protein misfolding. (PMID:23386035)
  • Report no association between serum uric acid and MTHFR C677T genotype, after the influences of ABCG2 Q126X and SLC22A12 W258X were removed. (PMID:23544272)
  • Our study suggests that the URAT1 rs559946 polymorphism is associated with increased hyperuricemia risk and may also contribute to gout development in Han Chinese men. (PMID:23981340)
  • analysis of mutations in genes SLC22A12 and SLC2A9 urate transporter genes in patients with exercise-induced acute kidney injury (PMID:24107611)
  • Our analysis provides evidence for multiple ancestral-specific effects across the SLC22A11/SLC22A12 locus that presumably influence the activity of OAT4 and URAT1 and risk of gout. (PMID:24360580)

Cross-species orthologs

51 orthologs

OrganismSymbolGene ID
danio_rerioslc22a4ENSDARG00000005335
danio_reriooatxENSDARG00000019713
danio_reriosi:dkey-166k12.1ENSDARG00000054690
danio_reriosi:dkey-119m7.4ENSDARG00000071049
danio_reriosi:dkey-119m7.8ENSDARG00000096654
mus_musculusSlc22a12ENSMUSG00000061742
rattus_norvegicusSlc22a12ENSRNOG00000021108
drosophila_melanogasterOrctFBGN0019952
drosophila_melanogasterCG15221FBGN0030331
drosophila_melanogasterBalatFBGN0033778
drosophila_melanogasterCG4630FBGN0033809
drosophila_melanogasterCG5592FBGN0035645
drosophila_melanogasterCG10486FBGN0035647
drosophila_melanogasterSLC22AFBGN0037140
drosophila_melanogasterCG7458FBGN0037144
drosophila_melanogasterCG14691FBGN0037829
drosophila_melanogasterCG14855FBGN0038260
drosophila_melanogasterCG14856FBGN0038261
drosophila_melanogasterCG14857FBGN0038262
drosophila_melanogasterCG12783FBGN0038448
drosophila_melanogasterCG7333FBGN0038715
drosophila_melanogasterCG7342FBGN0038716
drosophila_melanogasterCG17751FBGN0038717
drosophila_melanogasterCG17752FBGN0038718
drosophila_melanogasterCG16727FBGN0038719
drosophila_melanogasterCG6231FBGN0038720
drosophila_melanogasterCG4465FBGN0038750
drosophila_melanogasterCG4462FBGN0038752
drosophila_melanogasterCG4459FBGN0038753
drosophila_melanogasterCG6356FBGN0039178
drosophila_melanogasterCG3690FBGN0040350
drosophila_melanogasterCG31103FBGN0051103
drosophila_melanogasterCG31106FBGN0051106
drosophila_melanogasterCG31272FBGN0051272
drosophila_melanogasterCG33233FBGN0053233
drosophila_melanogasterCG33234FBGN0053234
drosophila_melanogasterOrct2FBGN0086365
drosophila_melanogasterCG42269FBGN0259164
drosophila_melanogasterCG44098FBGN0264907
caenorhabditis_elegansWBGENE00003837
caenorhabditis_elegansoct-1WBGENE00003842
caenorhabditis_elegansWBGENE00003843
caenorhabditis_elegansWBGENE00006220
caenorhabditis_elegansWBGENE00008110
caenorhabditis_elegansWBGENE00011456
caenorhabditis_elegansWBGENE00014127
caenorhabditis_elegansWBGENE00015088
caenorhabditis_elegansWBGENE00017751
caenorhabditis_elegansWBGENE00019408
caenorhabditis_elegansWBGENE00020701
caenorhabditis_elegansWBGENE00044455

Paralogs (22): SLC22A16 (ENSG00000004809), SLC22A17 (ENSG00000092096), SLC22A2 (ENSG00000112499), SLC22A7 (ENSG00000137204), SLC22A23 (ENSG00000137266), SLC22A14 (ENSG00000144671), SLC22A3 (ENSG00000146477), SLC22A8 (ENSG00000149452), SLC22A9 (ENSG00000149742), SVOPL (ENSG00000157703), SLC22A15 (ENSG00000163393), SVOP (ENSG00000166111), SLC22A11 (ENSG00000168065), SLC22A13 (ENSG00000172940), SLC22A1 (ENSG00000175003), SLC22A10 (ENSG00000184999), SLC22A25 (ENSG00000196600), SLC22A4 (ENSG00000197208), SLC22A5 (ENSG00000197375), SLC22A24 (ENSG00000197658), SLC22A6 (ENSG00000197901), SLC22A31 (ENSG00000259803)

Protein

Protein identifiers

Solute carrier family 22 member 12Q96S37 (reviewed: Q96S37)

Alternative names: Organic anion transporter 4-like protein, Renal-specific transporter, Urate anion exchanger 1, Urate:anion antiporter SLC22A12

All UniProt accessions (1): Q96S37

UniProt curated annotations — full annotation on UniProt →

Function. Electroneutral antiporter that translocates urate across the apical membrane of proximal tubular cells in exchange for monovalent organic or inorganic anions. Involved in renal reabsorption of urate and helps maintaining blood levels of uric acid. Mediates urate uptake by an exchange with organic anions such as (S)-lactate and nicotinate, and inorganic anion Cl(-). Other inorganic anions such as Br(-), I(-) and NO3(-) may also act as counteranions that exchange for urate. Also mediates orotate tubular uptake coupled with nicotinate efflux and to a lesser extent with lactate efflux, therefore displaying a potential role in orotate renal reabsorption. Orotate transport is Cl(-)-dependent.

Subunit / interactions. Interacts with PDZK1.

Subcellular location. Apical cell membrane.

Tissue specificity. Detected in kidney (at protein level). Detected in fetal and adult kidney. Detected in epithelial cells of proximal tubules in renal cortex.

Post-translational modifications. N-glycosylated.

Disease relevance. Hypouricemia renal 1 (RHUC1) [MIM:220150] A disorder characterized by impaired uric acid reabsorption at the apical membrane of proximal renal tubule cells, and high urinary urate excretion. Patients often appear asymptomatic, but may be subject to exercise-induced acute renal failure, chronic renal dysfunction and nephrolithiasis. The disease is caused by variants affecting the gene represented in this entry.

Similarity. Belongs to the major facilitator (TC 2.A.1) superfamily. Organic cation transporter (TC 2.A.1.19) family.

Isoforms (4)

UniProt IDNamesCanonical?
Q96S37-11yes
Q96S37-22
Q96S37-33
Q96S37-44

RefSeq proteins (4): NP_001263255, NP_001263256, NP_653186, NP_700357 (=MANE)

Domains & families (InterPro)

IDNameType
IPR011701MFSFamily
IPR020846MFS_domDomain
IPR036259MFS_trans_sfHomologous_superfamily

Pfam: PF07690

Catalyzed reactions (Rhea), 4 shown:

  • urate(out) + (S)-lactate(in) = urate(in) + (S)-lactate(out) (RHEA:72003)
  • nicotinate(in) + urate(out) = nicotinate(out) + urate(in) (RHEA:72023)
  • orotate(out) + nicotinate(in) = orotate(in) + nicotinate(out) (RHEA:72039)
  • urate(out) + n chloride(in) = urate(in) + n chloride(out) (RHEA:72319)

UniProt features (89 total): helix 33, sequence variant 24, transmembrane region 12, strand 9, splice variant 3, glycosylation site 2, sequence conflict 2, turn 2, chain 1, modified residue 1

Structure

Experimental structures (PDB)

28 structures.

PDBMethodResolution (Å)
9RXOX-RAY DIFFRACTION1.2
9RXRX-RAY DIFFRACTION1.69
9RXSX-RAY DIFFRACTION2
9DKCELECTRON MICROSCOPY2.55
9DK9ELECTRON MICROSCOPY2.68
9B1GELECTRON MICROSCOPY2.7
9DKBELECTRON MICROSCOPY2.74
9B1FELECTRON MICROSCOPY2.9
9B1HELECTRON MICROSCOPY2.9
8WJGELECTRON MICROSCOPY3
9B1JELECTRON MICROSCOPY3
9B1MELECTRON MICROSCOPY3
9DKAELECTRON MICROSCOPY3
9IRXELECTRON MICROSCOPY3
9B1LELECTRON MICROSCOPY3.1
9B1NELECTRON MICROSCOPY3.1
9B1OELECTRON MICROSCOPY3.1
9IRYELECTRON MICROSCOPY3.2
9JDYELECTRON MICROSCOPY3.23
9JE0ELECTRON MICROSCOPY3.23
9IRWELECTRON MICROSCOPY3.26
9B1KELECTRON MICROSCOPY3.3
9JDVELECTRON MICROSCOPY3.32
9US8ELECTRON MICROSCOPY3.32
9JDZELECTRON MICROSCOPY3.5
9JE1ELECTRON MICROSCOPY3.6
9B1IELECTRON MICROSCOPY3.7
8WJQELECTRON MICROSCOPY3.8

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q96S37-F186.790.54

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Post-translational modifications (1): 542

Glycosylation sites (2): 56, 102

Function

Pathways and Gene Ontology

Reactome pathways

9 pathways

IDPathway
R-HSA-561048Organic anion transport by SLC22 transporters
R-HSA-5619071Defective SLC22A12 causes renal hypouricemia 1 (RHUC1)
R-HSA-1643685Disease
R-HSA-382551Transport of small molecules
R-HSA-425366
R-HSA-425407SLC-mediated transmembrane transport
R-HSA-549132
R-HSA-5619102SLC transporter disorders
R-HSA-5619115Disorders of transmembrane transporters

MSigDB gene sets: 135 (showing top): GSE37336_LY6C_POS_VS_NEG_NAIVE_CD4_TCELL_DN, GSE45365_NK_CELL_VS_CD11B_DC_UP, GOBP_EXCRETION, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_CELLULAR_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND, chr11q13, GOBP_CELLULAR_RESPONSE_TO_INSULIN_STIMULUS, FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS_STABLE_DN, GOBP_CELLULAR_RESPONSE_TO_HORMONE_STIMULUS, GOBP_RESPONSE_TO_INSULIN, RYTAAWNNNTGAY_UNKNOWN, GOBP_ORGANIC_ANION_TRANSPORT, GOBP_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND, GOBP_CELLULAR_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_RESPONSE_TO_HORMONE

GO Biological Process (9): monoatomic ion transport (GO:0006811), response to xenobiotic stimulus (GO:0009410), obsolete organic anion transport (GO:0015711), urate transport (GO:0015747), cellular homeostasis (GO:0019725), cellular response to insulin stimulus (GO:0032869), urate metabolic process (GO:0046415), renal urate salt excretion (GO:0097744), transmembrane transport (GO:0055085)

GO Molecular Function (3): urate transmembrane transporter activity (GO:0015143), PDZ domain binding (GO:0030165), transmembrane transporter activity (GO:0022857)

GO Cellular Component (5): plasma membrane (GO:0005886), membrane (GO:0016020), apical plasma membrane (GO:0016324), brush border membrane (GO:0031526), extracellular exosome (GO:0070062)

Reactome top-level categories

Rollup of top-5 pathways:

CategoryPathways
SLC-mediated transport of organic anions1
SLC transporter disorders1
Transport of small molecules1
Disorders of transmembrane transporters1
Disease1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
transport2
response to chemical1
nitrogen compound transport1
homeostatic process1
response to insulin1
cellular response to peptide hormone stimulus1
small molecule metabolic process1
purine-containing compound metabolic process1
renal tubular secretion1
cellular process1
urate transport1
salt transmembrane transporter activity1
protein domain specific binding1
transporter activity1
transmembrane transport1
membrane1
cell periphery1
cellular anatomical structure1
apical part of cell1
plasma membrane region1
brush border1
apical plasma membrane1
cell projection membrane1
extracellular vesicle1

Protein interactions and networks

STRING

890 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
SLC22A12SLC2A9Q9NRM0996
SLC22A12SLC5A8Q8N695971
SLC22A12SLC5A12Q1EHB4968
SLC22A12SLC17A1Q14916924
SLC22A12PDZK1Q5T2W1892
SLC22A12ABCG2Q9UNQ0861
SLC22A12SLC17A3O00476819
SLC22A12CEBPDP49716763
SLC22A12ABCC4O15439758
SLC22A12SLC16A9Q7RTY1729
SLC22A12XDHP47989720
SLC22A12SLC2A5P22732716
SLC22A12SLC5A6Q9Y289629
SLC22A12LRP2P98164612
SLC22A12CARMIL1Q5VZK9600

IntAct

130 interactions, top by confidence:

ABTypeScore
SLC22A12PDZK1psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12SHANK1psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12SNX27psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12MAST2psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12PTPN3psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12NHERF2psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12MAGI2psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12MAST1psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12DLG3psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12PARD3Bpsi-mi:“MI:0407”(direct interaction)0.440
SLC22A12TIAM2psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12LIN7Cpsi-mi:“MI:0407”(direct interaction)0.440
SLC22A12NHERF4psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12TAMALINpsi-mi:“MI:0407”(direct interaction)0.440
PICK1SLC22A12psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12PDZD7psi-mi:“MI:0407”(direct interaction)0.440
APBA3SLC22A12psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12GRIP2psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12MPP2psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12SNTA1psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12PDZRN4psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12TAX1BP3psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12HTRA4psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12ARHGAP21psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12DLG4psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12AHNAKpsi-mi:“MI:0407”(direct interaction)0.440
SLC22A12PDLIM1psi-mi:“MI:0407”(direct interaction)0.440
SLC22A12SNTB1psi-mi:“MI:0407”(direct interaction)0.440
PATJSLC22A12psi-mi:“MI:0407”(direct interaction)0.440

BioGRID (13): SLC22A12 (Affinity Capture-MS), SMAP2 (Affinity Capture-MS), ATP5B (Affinity Capture-MS), SLC22A12 (Reconstituted Complex), SLC22A12 (Two-hybrid), SMAP2 (Affinity Capture-MS), CFL2 (Affinity Capture-MS), LIMA1 (Affinity Capture-MS), MYO5A (Affinity Capture-MS), OCIAD1 (Affinity Capture-MS), PPP1R12A (Affinity Capture-MS), SAP18 (Affinity Capture-MS), SPECC1L (Affinity Capture-MS)

ESM2 similar proteins: A0A3Q2IDB4, A0A8B7HA97, A4ZYQ5, A6NK97, A6QLW8, G1SZD9, O35956, O57379, O88909, Q05B81, Q1RPP5, Q2KIV1, Q3ZAV1, Q4U2R8, Q4W8A2, Q4W8A3, Q5R9C4, Q5RC45, Q5RCH6, Q5RLM2, Q63ZE4, Q66J52, Q6A4L0, Q6DFR1, Q6NUB3, Q6NYN7, Q6PXP3, Q6T423, Q6ZMD2, Q70BM6, Q76M72, Q76M99, Q80UJ1, Q864Z3, Q8CE47, Q8CFZ5, Q8HY24, Q8IVM8, Q8MK48, Q8N4F4

Diamond homologs: A0A3Q2IDB4, A0A8B7HA97, A6NK97, A6QLW8, B2GV36, G1SZD9, O34691, O35956, O57379, O75751, O88446, O88909, Q1RPP5, Q28ES4, Q2KIV1, Q3YAW7, Q3ZAV1, Q4U2R8, Q4W8A2, Q4W8A3, Q5R540, Q5R9C4, Q5RC45, Q5RCH6, Q5RLM2, Q63ZE4, Q66J52, Q66J54, Q6A4L0, Q6NYN7, Q6T423, Q70BM6, Q76M72, Q76M99, Q80UJ1, Q864Z3, Q8CFZ5, Q8HY24, Q8IVM8, Q8MK48

SIGNOR signaling

0 interactions.

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 88 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Ras activation upon Ca2+ influx through NMDA receptor550.1×2e-06
Unblocking of NMDA receptors, glutamate binding and activation547.7×2e-06
Negative regulation of NMDA receptor-mediated neuronal transmission547.7×2e-06
Long-term potentiation541.7×3e-06
Assembly and cell surface presentation of NMDA receptors940.1×9e-11
Neurexins and neuroligins1034.5×4e-11
Protein-protein interactions at synapses628.0×2e-06
RHOB GTPase cycle513.5×6e-04

GO biological processes:

GO termPartnersFoldFDR
establishment or maintenance of epithelial cell apical/basal polarity1176.1×4e-16
protein localization to synapse654.7×1e-07
receptor clustering752.0×1e-08
regulation of postsynaptic membrane neurotransmitter receptor levels741.3×5e-08
protein-containing complex assembly912.2×3e-06
cell-cell adhesion1012.1×8e-07
regulation of small GTPase mediated signal transduction58.6×6e-03
chemical synaptic transmission76.4×3e-03

Disease & clinical

Clinical variants and AI predictions

ClinVar

337 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic11
Likely pathogenic9
Uncertain significance175
Likely benign65
Benign42

Top pathogenic / likely-pathogenic (20)

Variant IDHGVSClassification
1177307NM_144585.4(SLC22A12):c.502G>A (p.Asp168Asn)Pathogenic
1356316NM_144585.4(SLC22A12):c.743del (p.Thr248fs)Pathogenic
1459519NC_000011.9:g.(?64359029)(64359450_?)delPathogenic
2501006NM_144585.4(SLC22A12):c.1523G>A (p.Ser508Asn)Pathogenic
3512NM_144585.4(SLC22A12):c.774G>A (p.Trp258Ter)Pathogenic
3514NM_144585.4(SLC22A12):c.894G>T (p.Glu298Asp)Pathogenic
3515NM_144585.4(SLC22A12):c.1253T>G (p.Leu418Arg)Pathogenic
3516NM_144585.4(SLC22A12):c.269G>A (p.Arg90His)Pathogenic
3517NM_144585.4(SLC22A12):c.1082G>T (p.Gly361Val)Pathogenic
3599964NM_144585.4(SLC22A12):c.506+1G>APathogenic
3615385NM_144585.4(SLC22A12):c.258_259delinsTT (p.Gln87Ter)Pathogenic
1515855NM_144585.4(SLC22A12):c.507-8_511delLikely pathogenic
2137128NM_144585.4(SLC22A12):c.1430G>A (p.Arg477His)Likely pathogenic
3599958NM_144585.4(SLC22A12):c.259C>T (p.Gln87Ter)Likely pathogenic
3599969NM_144585.4(SLC22A12):c.536del (p.Ser179fs)Likely pathogenic
3599974NM_144585.4(SLC22A12):c.667G>T (p.Glu223Ter)Likely pathogenic
4277583NM_144585.4(SLC22A12):c.693del (p.Leu232fs)Likely pathogenic
493093NM_144585.4(SLC22A12):c.103_104del (p.Ser35fs)Likely pathogenic
631663NM_144585.4(SLC22A12):c.661+1G>ALikely pathogenic
632166NM_144585.4(SLC22A12):c.1216C>T (p.Arg406Cys)Likely pathogenic

SpliceAI

1621 predictions. Top by Δscore:

VariantEffectΔscore
11:64592777:A:AGacceptor_gain1.0000
11:64592777:AGT:Aacceptor_gain1.0000
11:64592778:G:GGacceptor_gain1.0000
11:64592778:GT:Gacceptor_gain1.0000
11:64592778:GTG:Gacceptor_gain1.0000
11:64599888:ACGGT:Adonor_loss1.0000
11:64599889:CGG:Cdonor_loss1.0000
11:64599890:GGTGA:Gdonor_loss1.0000
11:64599891:G:GGdonor_gain1.0000
11:64600939:G:GGdonor_gain1.0000
11:64591958:G:GCdonor_loss0.9900
11:64591959:G:GAdonor_loss0.9900
11:64592773:CATCA:Cacceptor_loss0.9900
11:64592774:ATCAG:Aacceptor_loss0.9900
11:64592776:CAG:Cacceptor_loss0.9900
11:64592777:A:Cacceptor_loss0.9900
11:64592777:AGTG:Aacceptor_gain0.9900
11:64592778:GTGG:Gacceptor_gain0.9900
11:64592778:GTGGA:Gacceptor_gain0.9900
11:64592878:GACAG:Gdonor_gain0.9900
11:64592880:CAGG:Cdonor_loss0.9900
11:64592881:AGG:Adonor_loss0.9900
11:64592883:G:GAdonor_loss0.9900
11:64592883:G:GGdonor_gain0.9900
11:64592884:T:Gdonor_loss0.9900
11:64593560:G:GGdonor_gain0.9900
11:64593633:A:AGacceptor_gain0.9900
11:64593634:G:GGacceptor_gain0.9900
11:64598803:CACA:Cacceptor_loss0.9900
11:64598805:CAGGT:Cacceptor_loss0.9900

AlphaMissense

3544 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
11:64593697:A:CS242R0.982
11:64593699:C:AS242R0.982
11:64593699:C:GS242R0.982
11:64591602:T:CF16L0.977
11:64591604:C:AF16L0.977
11:64591604:C:GF16L0.977
11:64591827:T:CF91L0.975
11:64591829:C:AF91L0.975
11:64591829:C:GF91L0.975
11:64591674:T:CF40L0.974
11:64591676:C:AF40L0.974
11:64591676:C:GF40L0.974
11:64591563:T:CF3L0.968
11:64591565:T:AF3L0.968
11:64591565:T:GF3L0.968
11:64591916:G:CW120C0.966
11:64591916:G:TW120C0.966
11:64591701:T:AC49S0.961
11:64591702:G:CC49S0.961
11:64600866:G:AG509D0.961
11:64591935:T:CF127L0.960
11:64591937:C:AF127L0.960
11:64591937:C:GF127L0.960
11:64600862:A:CS508R0.960
11:64600864:T:AS508R0.960
11:64600864:T:GS508R0.960
11:64593704:G:AG244D0.952
11:64600865:G:CG509R0.951
11:64591828:T:GF91C0.948
11:64592781:G:CW135C0.948

dbSNP variants (sampled 300 via entrez): RS1000417463 (11:64593221 C>T), RS1000696326 (11:64594776 G>A), RS1000696796 (11:64599525 C>A,T), RS1000748706 (11:64594653 T>C), RS1000812258 (11:64602808 G>A,C), RS1000843602 (11:64599625 A>C,T), RS1000881389 (11:64589510 A>G), RS1000927186 (11:64589221 A>G), RS1001099955 (11:64596709 G>C), RS1001555231 (11:64601286 C>A), RS1001582833 (11:64593831 C>T), RS1001915048 (11:64596208 T>A,C), RS1001968922 (11:64595677 T>C), RS1002300241 (11:64590102 G>A), RS1002426830 (11:64589326 C>T)

Disease associations

OMIM: gene MIM:607096 | disease phenotypes: MIM:220150

GenCC curated gene-disease

DiseaseClassificationInheritance
hypouricemia, renal 1StrongAutosomal recessive
hereditary renal hypouricemiaSupportiveAutosomal recessive

Mondo (2): hypouricemia, renal 1 (MONDO:0020728), hereditary renal hypouricemia (MONDO:0009071)

Orphanet (1): Hereditary renal hypouricemia (Orphanet:94088)

HPO phenotypes

27 total (27 of 27 shown, HPO-id order):

HPOTerm
HP:0000007Autosomal recessive inheritance
HP:0000091Abnormal renal tubule morphology
HP:0000093Proteinuria
HP:0000790Hematuria
HP:0000791Uric acid nephrolithiasis
HP:0001919Acute kidney injury
HP:0002013Vomiting
HP:0002018Nausea
HP:0002150Hypercalciuria
HP:0003138Increased blood urea nitrogen
HP:0003149Hyperuricosuria
HP:0003259Elevated circulating creatinine concentration
HP:0003418Back pain
HP:0003537Hypouricemia
HP:0008651Uric acid urolithiasis independent of gout
HP:0008682Renal tubular epithelial necrosis
HP:0012211Abnormal renal physiology
HP:0012213Decreased glomerular filtration rate
HP:0012595Mild proteinuria
HP:0012622Chronic kidney disease
HP:0025709Intermediate young adult onset
HP:0025710Late young adult onset
HP:0030973Postexertional symptom exacerbation
HP:0033132Renal cortical hyperechogenicity
HP:0034368Urolithiasis
HP:0100520Oliguria
HP:6000746Elevated fractional excretion of urate

GWAS associations

24 associations (top):

StudyTraitp-value
GCST000418_2Uric acid levels2.000000e-09
GCST000581_2Urate levels2.000000e-31
GCST001163_4Urate levels3.000000e-16
GCST001608_4Renal function-related traits (urate)3.000000e-63
GCST001791_47Urate levels4.000000e-11
GCST002828_2Urate levels in obese individuals2.000000e-06
GCST002829_34Urate levels in overweight individuals9.000000e-14
GCST002829_43Urate levels in overweight individuals1.000000e-09
GCST002830_27Urate levels in lean individuals1.000000e-06
GCST003252_23Systemic lupus erythematosus7.000000e-07
GCST003359_4Serum uric acid levels5.000000e-06
GCST003924_4Renal overload gout2.000000e-06
GCST003925_9Gout5.000000e-11
GCST003926_7Renal underexcretion gout9.000000e-10
GCST007733_64Serum uric acid levels1.000000e-300
GCST007733_7Serum uric acid levels7.000000e-31
GCST007916_18Hyperuricemia2.000000e-16
GCST007918_7Serum uric acid levels2.000000e-16
GCST008971_38Urate levels5.000000e-48
GCST008972_170Urate levels2.000000e-246
GCST008972_96Urate levels1.000000e-101
GCST010274_8Gout (combined type)8.000000e-10
GCST010512_12Serum uric acid levels7.000000e-54
GCST010637_17Urate levels4.000000e-36

EFO canonical traits (3, from GWAS)

EFO IDTrait name
EFO:0004761uric acid measurement
EFO:0004531urate measurement
EFO:0009104hyperuricemia

MeSH disease descriptors (1)

DescriptorNameTree numbers
C537757Renal hypouricemia (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL6120 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

13 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 135,703 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL1474963BENZARONE4358
CHEMBL2105720LESINURAD4604
CHEMBL388590BENZBROMARONE48,245
CHEMBL832SULFINPYRAZONE413,780
CHEMBL897PROBENECID4105,640
CHEMBL981FENOFIBRIC ACID46,353
CHEMBL3746329SHR-4640332
CHEMBL4594446DOTINURAD368
CHEMBL2103824ARHALOFENATE2170
CHEMBL2325014PF-050897712219
CHEMBL3707347VERINURAD2184
CHEMBL5314438PULIGINURAD212
CHEMBL4640580EPAMINURAD138

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB clinical annotations

1 annotations.

VariantTypeLevelDrugsPhenotypes
rs11231825Toxicity3cytarabine;fludarabine;gemtuzumab ozogamicin;idarubicinLeukemia;Myeloid;Acute

PharmGKB variants

6 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs1529909SLC22A120.000
rs3825016SLC22A120.000
rs11231825SLC22A1232.751cytarabine;fludarabine;gemtuzumab ozogamicin;idarubicin
rs3825018SLC22A120.000
rs3825017SLC22A120.000
rs505802SLC22A120.000

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: transporter — Urate transporter

Most potent curated ligand interactions (2 total), top 2:

LigandActionAffinityParameter
dotinuradInhibition6.4pIC50
sufinpyrazoneInhibition4.0pIC50

Binding affinities (BindingDB)

456 measured of 564 human assays (565 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
4-[3-chloro-4-(hydroxymethyl)phenoxy]-3-cyano-N-(5-fluoro-2-pyridinyl)benzenesulfonamideIC501 nMUS-9067922: Chemical compounds
4-[[5-chloro-6-(hydroxymethyl)-3-pyridinyl]oxy]-2-fluoro-N-(5-fluoro-2-pyridinyl)benzenesulfonamideIC502 nMUS-9067922: Chemical compounds
3-cyano-4-(3,5-dichloro-4-cyanophenoxy)-N-(5-fluoro-2-pyridinyl)benzenesulfonamideIC503 nMUS-9067922: Chemical compounds
4-(3-chloro-4-cyano-5-fluorophenoxy)-3-cyano-N-(5-fluoro-2-pyridinyl)benzenesulfonamideIC508 nMUS-9067922: Chemical compounds
2{[4-(4-Cyanonaphthalen)isoquinolin-6-yl]thio}-2-methylpropionic acidIC508 nMUS-10100016: Condensed ring derivative, and preparation method, intermediate, pharmaceutical composition and use thereof
3-[1-[(2,6-dichlorophenyl)methyl]-3-methylindazol-6-yl]propanoic acidIC5010 nMUS-8987473: Ring-fused compound
5-[[1-[(2,6-dichlorophenyl)methyl]-3-methylindazol-6-yl]methyl]-3H-1,3,4-oxadiazole-2-thioneIC5010 nMUS-8987473: Ring-fused compound
(3S)-3-[7-(4-cyanonaphthalen-1-yl)thieno[3,2-c]pyridin-2-yl]butanoic acidIC5010 nMUS-10100016: Condensed ring derivative, and preparation method, intermediate, pharmaceutical composition and use thereof
(3R)-3-[4-(4-cyanonaphthalen-1-yl)thieno[2,3-c]pyridin-2-yl]butanoic acidIC5011 nMUS-10100016: Condensed ring derivative, and preparation method, intermediate, pharmaceutical composition and use thereof
4-(3-chloro-4-cyanophenoxy)-N-(5-chloro-2-pyridinyl)-3-cyanobenzenesulfonamideIC5012 nMUS-9067922: Chemical compounds
3-[4-(4-Cyanonaphthalen-1-yl)isoquinolin-6-yl]-2,2-dimethyl propionic AcidIC5012 nMUS-10100016: Condensed ring derivative, and preparation method, intermediate, pharmaceutical composition and use thereof
3-[4-(4-Cyanophenyl)thieno[2,3-c]pyridin-2-yl]-2,2-dimethyl propionic AcidIC5012 nMUS-10100016: Condensed ring derivative, and preparation method, intermediate, pharmaceutical composition and use thereof
2-methyl-2-[[7-(4-nitrophenyl)-1,2-benzothiazol-6-yl]sulfanyl]propanoic acidIC5012 nMUS-10173990: URAT1 inhibitor
1-[(2,6-dichlorophenyl)methyl]-3-methyl-6-(2H-tetrazol-5-ylmethyl)indazoleIC5013 nMUS-8987473: Ring-fused compound
4-(3-chloro-4-cyanophenoxy)-3-cyano-N-(5-fluoro-2-pyridinyl)benzenesulfonamideIC5013 nMUS-9067922: Chemical compounds
3-cyano-4-(4-cyano-3,5-dimethylphenoxy)-N-(5-fluoro-2-pyridinyl)benzenesulfonamideIC5013 nMUS-9067922: Chemical compounds
4-(2-chloro-6-cyano-1-benzofuran-4-yl)-2-hydroxybenzoic acidIC5014 nMUS-10266496: Carboxy substituted (hetero) aromatic ring derivatives and preparation method and uses thereof
2-[1-[(2,6-dichlorophenyl)methyl]-3-methylindol-6-yl]acetic acidIC5015 nMUS-8987473: Ring-fused compound
2-[1-[(2,6-dichlorophenyl)methyl]-3-methylindazol-6-yl]-2,2-difluoroacetic acidIC5015 nMUS-8987473: Ring-fused compound
4-(3-chloro-4-cyanophenoxy)-3-cyano-N-(4-fluoro-2-pyridinyl)benzenesulfonamideIC5015 nMUS-9067922: Chemical compounds
2{[4-(4-Cyanophenyl)isoquinolin-6-yl]thio-2-methylpropionic AcidIC5015 nMUS-10100016: Condensed ring derivative, and preparation method, intermediate, pharmaceutical composition and use thereof
3-[4-(4-Cyanonaphthalen-1-yl)isoquinolin-6-yl]-2-methyl propionic acidIC5015 nMUS-10100016: Condensed ring derivative, and preparation method, intermediate, pharmaceutical composition and use thereof
4-(6-cyano-2-fluoro-1-benzothiophen-4-yl)-2-hydroxybenzoic acidIC5015 nMUS-10266496: Carboxy substituted (hetero) aromatic ring derivatives and preparation method and uses thereof
4-[1-[(2,6-dichlorophenyl)methyl]-3-methylindazol-6-yl]butanoic acidIC5016 nMUS-8987473: Ring-fused compound
3-[1-[(2-chloro-6-cyclopropylphenyl)methyl]-3-methylindazol-6-yl]propanoic acidIC5017 nMUS-8987473: Ring-fused compound
2-[1-[(2,6-dimethylphenyl)methyl]-3,3-dimethyl-2H-indol-6-yl]acetic acidIC5018 nMUS-8987473: Ring-fused compound
2-[1-[(2,6-dichlorophenyl)methyl]-3-methylindazol-6-yl]acetic acidIC5018 nMUS-8987473: Ring-fused compound
3-[4-(4-Cyanonaphthalen-1-yl)thieno[2,3-c]pyridin-2-yl]-2,2-dimethyl propionic AcidIC5018 nMUS-10100016: Condensed ring derivative, and preparation method, intermediate, pharmaceutical composition and use thereof
2-{[4-(2-Chloro-4-cyanophenyl)isoquinolin-6-yl]thio}-2-methyl propionic AcidIC5018 nMUS-10100016: Condensed ring derivative, and preparation method, intermediate, pharmaceutical composition and use thereof
1-{[4-(4-cyanonaphthalen-1-yl)isoquinolin-6-yl]thio}cyclobutane-1-carboxylic AcidIC5018 nMUS-10100016: Condensed ring derivative, and preparation method, intermediate, pharmaceutical composition and use thereof
4-(3-chloro-4-fluorophenoxy)-3-cyano-N-(5-fluoro-2-pyridinyl)benzenesulfonamideIC5019 nMUS-9067922: Chemical compounds
2{[4-(5-Cyanonaphthalen-1-yl)isoquinolin-6-yl]thio}-2-methylpropionic AcidIC5019 nMUS-10100016: Condensed ring derivative, and preparation method, intermediate, pharmaceutical composition and use thereof
3-[4-(4-Cyanophenyl)isoquinolin-6-yl]-2,2-dimethyl propionic AcidIC5019 nMUS-10100016: Condensed ring derivative, and preparation method, intermediate, pharmaceutical composition and use thereof
4-(3-cyanonaphthalen-1-yl)-2-hydroxybenzoic acidIC5019 nMUS-10266496: Carboxy substituted (hetero) aromatic ring derivatives and preparation method and uses thereof
1-(6-bromoquinolin-4-yl)sulfanylcyclobutane-1-carboxylic acidIC5019 nMUS-9637484: Cycloalkyl acid derivative, preparation method thereof, and pharmaceutical application thereof
2-[[7-(4-cyanophenyl)-1,2-benzothiazol-6-yl]sulfanyl]-2-ethylbutanoic acidIC5021 nMUS-10173990: URAT1 inhibitor
4-(4-cyano-3,5-dimethylphenoxy)-2-fluoro-N-(5-fluoro-2-pyridinyl)benzenesulfonamideIC5021 nMUS-9067922: Chemical compounds
1-[[7-(4-cyanophenyl)-1,2-benzothiazol-6-yl]sulfanyl]cyclobutane-1-carboxylic acidIC5021.5 nMUS-10173990: URAT1 inhibitor
2-[1-[(2,6-dimethylphenyl)methyl]-3-methylindol-6-yl]acetic acidIC5022 nMUS-8987473: Ring-fused compound
3-[1-[(2,6-dichlorophenyl)methyl]-3-methylindol-6-yl]propanoic acidIC5023 nMUS-8987473: Ring-fused compound
1-[(2,6-dichlorophenyl)methyl]-3-methyl-6-[2-(2H-tetrazol-5-yl)ethyl]indazoleIC5023 nMUS-8987473: Ring-fused compound
2-[1-[(2,6-dimethylphenyl)methyl]-3-methyl-2,3-dihydroindol-6-yl]acetic acidIC5024 nMUS-8987473: Ring-fused compound
2-[1-[(2,6-dichlorophenyl)methyl]-3-ethylindazol-6-yl]acetic acidIC5024 nMUS-8987473: Ring-fused compound
3-cyano-N-(5-fluoro-2-pyridinyl)-4-(2-methoxy-6-methylphenoxy)benzenesulfonamideIC5024 nMUS-9067922: Chemical compounds
3-[4-(4-Cyanonaphthalen-1-yl)thieno[2,3-c]pyridin-2-yl] butyric AcidIC5024 nMUS-10100016: Condensed ring derivative, and preparation method, intermediate, pharmaceutical composition and use thereof
3-[4-(4-Cyanonaphthalen-1-yl)isoquinolin-6-yl]butyric AcidIC5024 nMUS-10100016: Condensed ring derivative, and preparation method, intermediate, pharmaceutical composition and use thereof
4-[(5-chloro-6-methoxy-3-pyridinyl)oxy]-3-cyano-N-(5-fluoro-2-pyridinyl)benzenesulfonamideIC5025 nMUS-9067922: Chemical compounds
(E)-3-[1-(4-cyanophenyl)naphthalen-2-yl]sulfanylbut-2-enoic acidIC5025 nMUS-10173990: URAT1 inhibitor
3-[1-[(2,6-dichlorophenyl)methyl]-3-ethylindazol-6-yl]propanoic acidIC5026 nMUS-8987473: Ring-fused compound
RDEA3170EC5026 nMUS-10266493: Thioacetate compounds, compositions and methods of use

ChEMBL bioactivities

992 potent at pChembl≥5 of 1085 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
9.00IC501nMCHEMBL3688197
8.70IC502nMCHEMBL3688190
8.70IC502nMCHEMBL4087516
8.52IC503nMCHEMBL3688192
8.40IC504nMCHEMBL5414132
8.22IC506nMCHEMBL5399348
8.15IC507nMCHEMBL3971610
8.15IC507nMCHEMBL3683365
8.10IC508nMCHEMBL3688188
8.10IC508nMCHEMBL5759161
8.00IC5010nMCHEMBL3692018
8.00IC5010nMCHEMBL3692028
8.00IC5010nMCHEMBL4088988
8.00IC5010nMCHEMBL5965801
7.96IC5011nMCHEMBL6056778
7.92IC5012nMCHEMBL3683287
7.92IC5012nMCHEMBL3688185
7.92IC5012nMCHEMBL6049501
7.92IC5012nMPULIGINURAD
7.92IC5012nMCHEMBL5962505
7.89IC5013nMCHEMBL3683365
7.89IC5013nMCHEMBL3692025
7.89IC5013nMCHEMBL3683287
7.85IC5014nMCHEMBL5885206
7.82IC5015nMCHEMBL3691994
7.82IC5015nMCHEMBL3692056
7.82IC5015nMCHEMBL3683388
7.82IC5015nMCHEMBL5791883
7.82IC5015nMCHEMBL5926965
7.82IC5015nMCHEMBL5860948
7.80IC5016nMCHEMBL3692024
7.77IC5017nMCHEMBL3692057
7.75IC5018nMCHEMBL3902309
7.75IC5018nMCHEMBL3899557
7.75IC5018nMCHEMBL3691993
7.75IC5018nMCHEMBL3692003
7.75IC5018nMCHEMBL5874127
7.75IC5018nMCHEMBL5793003
7.75IC5018nMCHEMBL5745494
7.72IC5019nMCHEMBL3683364
7.72IC5019nMCHEMBL5786822
7.72IC5019nMCHEMBL5960864
7.72IC5019nMSHR-4640
7.72IC5019nMCHEMBL5993875
7.71IC5019.7nMCHEMBL5396351
7.70IC5020nMCHEMBL3947681
7.68IC5021nMCHEMBL3948311
7.68IC5021nMCHEMBL5937449
7.67IC5021.5nMCHEMBL5948551
7.66IC5022nMBENZBROMARONE

PubChem BioAssay actives

288 with measured affinity, of 766 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
N-[3-(4-cyanophenyl)-4-pyridinyl]-1,1,1-trifluoromethanesulfonamide1447335: Inhibition of human URAT1 expressed in HEK293T cells assessed as reduction in [14C]uric acid uptake measured after 5 mins by liquid scintillation counting methodic500.0020uM
N-(3,5-dichloro-4-cyanophenyl)-2-(trifluoromethoxy)benzenesulfonamide2004198: Inhibition of URAT1 (unknown origin) assessed as decrease in uric acid level measured after 15 minsic500.0040uM
N-(3-chloro-4-cyanophenyl)-2-(trifluoromethoxy)benzenesulfonamide2004198: Inhibition of URAT1 (unknown origin) assessed as decrease in uric acid level measured after 15 minsic500.0060uM
N-[3-(4-cyanonaphthalen-1-yl)-4-pyridinyl]-1,1,1-trifluoromethanesulfonamide1447335: Inhibition of human URAT1 expressed in HEK293T cells assessed as reduction in [14C]uric acid uptake measured after 5 mins by liquid scintillation counting methodic500.0100uM
dimethyl 2-[[5-bromo-4-(4-bromonaphthalen-1-yl)-1,2,4-triazol-3-yl]sulfanyl]propanedioate2004197: Inhibition of human URAT1ic500.0197uM
2-[[3-(4-cyanonaphthalen-1-yl)-4-pyridinyl]sulfanyl]-2-methylpropanoic acid1649928: Inhibition of human URAT1ic500.0230uM
(3,5-dibromo-4-hydroxyphenyl)-(2-ethyl-1-benzofuran-3-yl)methanone593714: Inhibition of human URAT1 expressed in xenopus oocyte assessed as inhibition of [14C]-labelled urate uptake after 60 mins by liquid scintillation countingic500.0260uM
4-(5-cyano-2-fluoro-1-benzofuran-7-yl)-2-hydroxybenzoic acid2121183: Inhibition of URAT1 (unknown origin) by absorbance based assayic500.0310uM
1-[[5-bromo-4-[(4-bromonaphthalen-1-yl)methyl]-1,2,4-triazol-3-yl]sulfanyl]-N-pyridin-3-ylmethanesulfonamide1575209: Inhibition of human URAT1 expressed in HEK293 cells assessed as reduction in [8-14C]uric acid uptakeic500.0320uM
1-(6-bromoquinolin-4-yl)sulfanylcyclobutane-1-carboxylic acid1447359: Inhibition of human URAT1ic500.0330uM
sodium 2-[[5-bromo-4-(thiophen-2-ylmethyl)-1,2,4-triazol-3-yl]sulfanyl]acetate2037824: Inhibition of URAT1 (unknown origin) stably expressed in HEK293 cells assessed as reduction of uric acid uptake measured after 48 hrsic500.0350uM
4-(2-chloro-5-cyano-1-benzofuran-7-yl)-2-hydroxybenzoic acid2121183: Inhibition of URAT1 (unknown origin) by absorbance based assayic500.0370uM
(3,5-dichloro-4-hydroxyphenyl)-(1,1-dioxo-2H-1,3-benzothiazol-3-yl)methanone1725612: Inhibition of human URAT1 expressed in Xenopus laevis oocytes assessed as inhibition of [14C]uric acid uptake measured after 60 mins by liquid scintillation counter methodic500.0372uM
(3,5-dibromo-4-hydroxyphenyl)-(2-ethyl-5-methoxy-1-benzofuran-3-yl)methanone593714: Inhibition of human URAT1 expressed in xenopus oocyte assessed as inhibition of [14C]-labelled urate uptake after 60 mins by liquid scintillation countingic500.0420uM
4-(6-cyano-1-benzothiophen-4-yl)-2-hydroxybenzoic acid2121183: Inhibition of URAT1 (unknown origin) by absorbance based assayic500.0450uM
1-[2-(4-cyanophenyl)phenyl]sulfanylcyclobutane-1-carboxylic acid1447360: Inhibition of URAT1 (unknown origin) expressed in HEK293 cells assessed as reduction in [14C]uric acid uptake after 10 mins by liquid scintillation counting methodic500.0500uM
2-[[3-(4-cyanophenyl)-4-pyridinyl]sulfanyl]-2-methylpropanoic acid1447359: Inhibition of human URAT1ic500.0500uM
N-[[(2S)-1-(6-cyclopropylquinoline-4-carbonyl)pyrrolidin-2-yl]methyl]-1,1,1-trifluoromethanesulfonamide2075628: Inhibition of human URAT1 expressed in HEK-293T cells assessed as inhibition rate by measuring [C14}-uric acid uptake measured after 8 mins by MicroBeta2 scintillation counting analysisic500.0520uM
(3,5-dibromo-4-hydroxyphenyl)-(2,3-dihydropyrido[4,3-b][1,4]oxazin-4-yl)methanone1649928: Inhibition of human URAT1ki0.0570uM
1-[6-(trifluoromethyl)quinolin-4-yl]sulfanylcyclobutane-1-carboxylic acid1269088: Inhibition of human URAT1 expressed in HEK293 cells assessed as [14C]uric acid uptake after 12 mins by scintillation counteric500.0612uM
2-[3-[(2,6-dimethylphenyl)methoxy]-4-methylphenyl]acetic acid1447359: Inhibition of human URAT1ic500.0800uM
N-(6-bromoquinolin-4-yl)-1,1,1-trifluoromethanesulfonamide1447335: Inhibition of human URAT1 expressed in HEK293T cells assessed as reduction in [14C]uric acid uptake measured after 5 mins by liquid scintillation counting methodic500.0830uM
(3,5-dibromo-4-hydroxyphenyl)-(2-ethyl-5-hydroxy-1-benzofuran-4-yl)methanone593714: Inhibition of human URAT1 expressed in xenopus oocyte assessed as inhibition of [14C]-labelled urate uptake after 60 mins by liquid scintillation countingic500.0830uM
sodium 2-[[5-bromo-4-[(4-bromonaphthalen-1-yl)methyl]-1,2,4-triazol-3-yl]sulfanyl]acetate1575209: Inhibition of human URAT1 expressed in HEK293 cells assessed as reduction in [8-14C]uric acid uptakeic500.0940uM
4-[5-cyano-2-(trifluoromethyl)-1-benzofuran-7-yl]-2-hydroxybenzoic acid2121183: Inhibition of URAT1 (unknown origin) by absorbance based assayic500.1040uM
4-(6-cyano-2,3-dihydro-1H-inden-4-yl)-2-hydroxybenzoic acid2121183: Inhibition of URAT1 (unknown origin) by absorbance based assayic500.1070uM
1,1,1-trifluoro-N-[[(2S)-1-[6-(1,2-oxazol-4-yl)quinoline-4-carbonyl]pyrrolidin-2-yl]methyl]methanesulfonamide2075628: Inhibition of human URAT1 expressed in HEK-293T cells assessed as inhibition rate by measuring [C14}-uric acid uptake measured after 8 mins by MicroBeta2 scintillation counting analysisic500.1100uM
(3,5-dibromo-4-hydroxyphenyl)-(2-ethyl-6-methoxy-1-benzofuran-3-yl)methanone593714: Inhibition of human URAT1 expressed in xenopus oocyte assessed as inhibition of [14C]-labelled urate uptake after 60 mins by liquid scintillation countingic500.1110uM
1-[6-[2-(trifluoromethyl)phenyl]quinolin-4-yl]sulfanylcyclobutane-1-carboxylic acid1269088: Inhibition of human URAT1 expressed in HEK293 cells assessed as [14C]uric acid uptake after 12 mins by scintillation counteric500.1153uM
N-[3-(4-cyanonaphthalen-1-yl)-4-pyridinyl]benzenesulfonamide1447335: Inhibition of human URAT1 expressed in HEK293T cells assessed as reduction in [14C]uric acid uptake measured after 5 mins by liquid scintillation counting methodic500.1270uM
1-(7-bromoquinolin-4-yl)sulfanylcyclobutane-1-carboxylic acid1269088: Inhibition of human URAT1 expressed in HEK293 cells assessed as [14C]uric acid uptake after 12 mins by scintillation counteric500.1298uM
(3,5-dibromo-4-hydroxyphenyl)-(2-ethyl-6-hydroxy-1-benzofuran-3-yl)methanone593714: Inhibition of human URAT1 expressed in xenopus oocyte assessed as inhibition of [14C]-labelled urate uptake after 60 mins by liquid scintillation countingic500.1380uM
4-(5-cyano-1-benzofuran-7-yl)-2-hydroxybenzoic acid2121183: Inhibition of URAT1 (unknown origin) by absorbance based assayic500.1400uM
1-[6-(4-fluorophenyl)quinolin-4-yl]sulfanylcyclobutane-1-carboxylic acid1269088: Inhibition of human URAT1 expressed in HEK293 cells assessed as [14C]uric acid uptake after 12 mins by scintillation counteric500.1588uM
(E)-4-[2-(4-bromonaphthalen-1-yl)-4-oxo-2,3-dihydrochromen-8-yl]-2-methylbut-2-enoic acid2129091: Inhibition of human URAT1 transfected in HEK293 cells by measuring 14C-uric acid uptake preincubated for 30 mins followed by 14–uric acid addition and measured after 15 mins by liquid scintillation counter analysisic500.1600uM
sodium 2-[[3-(4-cyanonaphthalen-1-yl)-4-pyridinyl]sulfanyl]-2-methylpropanoate1900867: Inhibition of URAT1 (unknown origin)-mediated 14C-uric acid uptake expressed in HEK293 cells using 14C-uric acid as substrate preincubated for 30 mins followed by substrate addition and measured after 15 mins by liquid scintillation counting analysisic500.1700uM
4-(6-cyano-1-benzofuran-4-yl)-2-hydroxybenzoic acid2121183: Inhibition of URAT1 (unknown origin) by absorbance based assayic500.1720uM
(6-bromo-2-ethyl-7-hydroxy-1-benzofuran-4-yl)-(3,5-dibromo-4-hydroxyphenyl)methanone593714: Inhibition of human URAT1 expressed in xenopus oocyte assessed as inhibition of [14C]-labelled urate uptake after 60 mins by liquid scintillation countingic500.1770uM
(3,5-dibromo-4-hydroxyphenyl)-(2-ethyl-5-hydroxy-1-benzofuran-3-yl)methanone593714: Inhibition of human URAT1 expressed in xenopus oocyte assessed as inhibition of [14C]-labelled urate uptake after 60 mins by liquid scintillation countingic500.1890uM
(E)-4-[2-(4-bromonaphthalen-1-yl)-7-hydroxy-4-oxo-2,3-dihydrochromen-8-yl]-2-methylbut-2-enoic acid2129091: Inhibition of human URAT1 transfected in HEK293 cells by measuring 14C-uric acid uptake preincubated for 30 mins followed by 14–uric acid addition and measured after 15 mins by liquid scintillation counter analysisic500.1900uM
1-[6-(methoxymethyl)quinolin-4-yl]sulfanylcyclobutane-1-carboxylic acid1269088: Inhibition of human URAT1 expressed in HEK293 cells assessed as [14C]uric acid uptake after 12 mins by scintillation counteric500.1978uM
N-[3-(4-cyanophenyl)-4-pyridinyl]methanesulfonamide1447335: Inhibition of human URAT1 expressed in HEK293T cells assessed as reduction in [14C]uric acid uptake measured after 5 mins by liquid scintillation counting methodic500.2030uM
1-[6-(2-methoxyethoxy)quinolin-4-yl]sulfanylcyclobutane-1-carboxylic acid1269088: Inhibition of human URAT1 expressed in HEK293 cells assessed as [14C]uric acid uptake after 12 mins by scintillation counteric500.2069uM
1,1,1-trifluoro-N-[3-(4-methoxyphenyl)-4-pyridinyl]methanesulfonamide1447335: Inhibition of human URAT1 expressed in HEK293T cells assessed as reduction in [14C]uric acid uptake measured after 5 mins by liquid scintillation counting methodic500.2150uM
7-hydroxy-2-(4-hydroxyphenyl)-8-(3-methylbut-2-enyl)-2,3-dihydrochromen-4-one2129111: Inhibition of URAT1 (unknown origin)ic500.2200uM
sodium 4-[5-bromo-4-[(4-bromonaphthalen-1-yl)methyl]-1,2,4-triazol-3-yl]butanoate2037824: Inhibition of URAT1 (unknown origin) stably expressed in HEK293 cells assessed as reduction of uric acid uptake measured after 48 hrsic500.2300uM
(E)-4-[2-(1-benzothiophen-3-yl)-7-hydroxy-4-oxo-2,3-dihydrochromen-8-yl]-2-methylbut-2-enoic acid2129091: Inhibition of human URAT1 transfected in HEK293 cells by measuring 14C-uric acid uptake preincubated for 30 mins followed by 14–uric acid addition and measured after 15 mins by liquid scintillation counter analysisic500.2300uM
sodium 2-[[3-[(4-cyanonaphthalen-1-yl)amino]-4-pyridinyl]sulfanylmethyl]benzoate1900867: Inhibition of URAT1 (unknown origin)-mediated 14C-uric acid uptake expressed in HEK293 cells using 14C-uric acid as substrate preincubated for 30 mins followed by substrate addition and measured after 15 mins by liquid scintillation counting analysisic500.2400uM
1,1,1-trifluoro-N-[3-(2-methoxyphenyl)-4-pyridinyl]methanesulfonamide1447335: Inhibition of human URAT1 expressed in HEK293T cells assessed as reduction in [14C]uric acid uptake measured after 5 mins by liquid scintillation counting methodic500.2410uM
N-[3-(4-cyanonaphthalen-1-yl)-4-pyridinyl]methanesulfonamide1447335: Inhibition of human URAT1 expressed in HEK293T cells assessed as reduction in [14C]uric acid uptake measured after 5 mins by liquid scintillation counting methodic500.2610uM

CTD chemical–gene interactions

29 total (human), top 29 by PubMed support.

ChemicalActions (top 5)PubMed papers
Uric Aciddecreases reaction, increases uptake, affects cotreatment, increases import, increases expression (+2 more)8
Benzbromaronedecreases activity, affects response to substance, affects activity, decreases reaction, increases uptake6
6-hydroxybenzbromaronedecreases reaction, increases uptake, decreases activity2
Probenecidaffects activity, decreases reaction, increases uptake2
Losartandecreases activity, decreases abundance, decreases expression, affects response to substance2
benzaronedecreases reaction, increases uptake1
honokioldecreases reaction, increases expression1
bisphenol Adecreases methylation1
nuciferineincreases expression, affects binding, decreases reaction1
estrone sulfateincreases uptake1
sodium arseniteincreases expression1
perfluorooctanoic aciddecreases reaction, increases import, affects cotreatment1
perfluorodecanoic acidaffects cotreatment, decreases reaction, increases import1
CGP 52608affects binding, increases reaction1
E 3040decreases reaction, increases uptake1
perfluoro-n-heptanoic acidaffects cotreatment, decreases reaction, increases import1
perfluoro-n-nonanoic acidaffects cotreatment, decreases reaction, increases import1
perfluorohexanoic acidaffects uptake1
Arsenicaffects methylation1
Chlorineaffects cotreatment, decreases reaction, increases import1
Enalaprildecreases reaction, increases uptake1
Indomethacindecreases reaction, increases uptake1
Oxypurinoldecreases reaction, increases uptake1
Phenylbutazonedecreases reaction, increases uptake1
Pyrazinamideaffects activity1
Salicylatesincreases uptake, decreases reaction1
Sulfinpyrazoneincreases uptake, decreases reaction1
Valproic Acidincreases methylation1
Cadmium Chlorideincreases expression1

ChEMBL screening assays

108 unique, capped per target: 108 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1638722BindingInhibition of human URAT-1 assessed as increase in renal uric acid excretionPhase 2a randomized controlled trial of short-term activity, safety, and pharmacokinetics of a novel nonnucleoside reverse transcriptase inhibitor, RDEA806, in HIV-1-positive, antiretroviral-naive subjects. — Antimicrob Agents Chemother

Clinical trials (associated diseases)

3 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT04398251PHASE4UNKNOWNA Randomized Clinical Trail of The Effect of Postoperative Uric Acid Control on Stone Recurrence and Renal Function in Patients With Hyperuricemia of Urolithiasis.
NCT06310967PHASE1/PHASE2RECRUITINGA Dose Escalation Study of IG3018 in Subjects With Hyperuricemia With or Without Chronic Kidney Disease
NCT06065852Not specifiedRECRUITINGNational Registry of Rare Kidney Diseases