SLC22A15
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Also known as FLIPT1
Summary
SLC22A15 (solute carrier family 22 member 15, HGNC:20301) is a protein-coding gene on chromosome 1p13.1, encoding Solute carrier family 22 member 15 (Q8IZD6). Organic zwitterion/cation transporter with apparent specificity for amino acids and their derivatives.
Organic ion transporters, such as SLC22A15, transport various medically and physiologically important compounds, including pharmaceuticals, toxins, hormones, neurotransmitters, and cellular metabolites. These transporters are also referred to as amphiphilic solute facilitators (ASFs).
Source: NCBI Gene 55356 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 78 total
- MANE Select transcript:
NM_018420
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:20301 |
| Approved symbol | SLC22A15 |
| Name | solute carrier family 22 member 15 |
| Location | 1p13.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLIPT1 |
| Ensembl gene | ENSG00000163393 |
| Ensembl biotype | protein_coding |
| OMIM | 608275 |
| Entrez | 55356 |
Gene structure
Transcript identifiers
Ensembl transcripts: 6 — 5 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000369502, ENST00000369503, ENST00000481127, ENST00000877950, ENST00000920377, ENST00000969657
RefSeq mRNA: 1 — MANE Select: NM_018420
NM_018420
CCDS: CCDS44198
Canonical transcript exons
ENST00000369503 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001074085 | 116064436 | 116064508 |
| ENSE00001074086 | 116062762 | 116062882 |
| ENSE00001074088 | 116066520 | 116066708 |
| ENSE00001196521 | 116037303 | 116037388 |
| ENSE00001196529 | 116031366 | 116031581 |
| ENSE00001196533 | 116026893 | 116027022 |
| ENSE00001196537 | 116020721 | 116020885 |
| ENSE00001196541 | 116019582 | 116019714 |
| ENSE00001196550 | 115992031 | 115992243 |
| ENSE00001450193 | 116067019 | 116070054 |
| ENSE00001450194 | 115976513 | 115976714 |
| ENSE00003496203 | 116035187 | 116035327 |
Expression profiles
Bgee: expression breadth ubiquitous, 213 present calls, max score 94.39.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 3.8008 / max 217.0966, expressed in 1128 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 4799 | 2.7095 | 949 |
| 4798 | 0.6990 | 289 |
| 4801 | 0.2750 | 133 |
| 4800 | 0.1010 | 25 |
| 4803 | 0.0163 | 3 |
Top tissues by expression
250 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| corpus callosum | UBERON:0002336 | 94.39 | gold quality |
| monocyte | CL:0000576 | 90.72 | gold quality |
| leukocyte | CL:0000738 | 89.64 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 88.03 | gold quality |
| bone marrow | UBERON:0002371 | 86.57 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 86.06 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 85.95 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 85.88 | gold quality |
| spinal cord | UBERON:0002240 | 85.75 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 83.99 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 83.90 | gold quality |
| bone marrow cell | CL:0002092 | 83.56 | gold quality |
| right lung | UBERON:0002167 | 83.48 | gold quality |
| blood | UBERON:0000178 | 83.39 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 82.44 | gold quality |
| substantia nigra | UBERON:0002038 | 82.30 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 82.19 | gold quality |
| midbrain | UBERON:0001891 | 82.09 | gold quality |
| skin of leg | UBERON:0001511 | 82.06 | gold quality |
| medulla oblongata | UBERON:0001896 | 81.95 | gold quality |
| postcentral gyrus | UBERON:0002581 | 81.91 | gold quality |
| Ammon’s horn | UBERON:0001954 | 81.48 | gold quality |
| skin of abdomen | UBERON:0001416 | 81.14 | gold quality |
| esophagus mucosa | UBERON:0002469 | 81.10 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 80.84 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 80.15 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 80.14 | gold quality |
| calcaneal tendon | UBERON:0003701 | 80.14 | gold quality |
| zone of skin | UBERON:0000014 | 80.05 | gold quality |
| islet of Langerhans | UBERON:0000006 | 80.00 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.85 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
167 targeting SLC22A15, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-3120-5P | 100.00 | 65.56 | 965 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-513B-5P | 99.99 | 69.96 | 2150 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-485-3P | 99.98 | 70.68 | 1585 |
| HSA-MIR-539-3P | 99.98 | 70.74 | 1616 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-433-3P | 99.98 | 69.37 | 1203 |
| HSA-MIR-8075 | 99.97 | 67.20 | 962 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
Literature-anchored findings (GeneRIF, showing 2)
- Flipts might have a role in carnitine transport, particularly in brain (PMID:12372408)
- Deorphaning a solute carrier 22 family member, SLC22A15, through functional genomic studies. (PMID:33124720)
Cross-species orthologs
42 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Slc22a15 | ENSMUSG00000033147 |
| rattus_norvegicus | Slc22a15 | ENSRNOG00000033051 |
| drosophila_melanogaster | Orct | FBGN0019952 |
| drosophila_melanogaster | CG15221 | FBGN0030331 |
| drosophila_melanogaster | Balat | FBGN0033778 |
| drosophila_melanogaster | CG5592 | FBGN0035645 |
| drosophila_melanogaster | CG10486 | FBGN0035647 |
| drosophila_melanogaster | CG14691 | FBGN0037829 |
| drosophila_melanogaster | CG14855 | FBGN0038260 |
| drosophila_melanogaster | CG14856 | FBGN0038261 |
| drosophila_melanogaster | CG14857 | FBGN0038262 |
| drosophila_melanogaster | CG12783 | FBGN0038448 |
| drosophila_melanogaster | CG7333 | FBGN0038715 |
| drosophila_melanogaster | CG7342 | FBGN0038716 |
| drosophila_melanogaster | CG17751 | FBGN0038717 |
| drosophila_melanogaster | CG17752 | FBGN0038718 |
| drosophila_melanogaster | CG16727 | FBGN0038719 |
| drosophila_melanogaster | CG6231 | FBGN0038720 |
| drosophila_melanogaster | CG4465 | FBGN0038750 |
| drosophila_melanogaster | CG4462 | FBGN0038752 |
| drosophila_melanogaster | CG4459 | FBGN0038753 |
| drosophila_melanogaster | CG6356 | FBGN0039178 |
| drosophila_melanogaster | CG3690 | FBGN0040350 |
| drosophila_melanogaster | CG31103 | FBGN0051103 |
| drosophila_melanogaster | CG31106 | FBGN0051106 |
| drosophila_melanogaster | CG31272 | FBGN0051272 |
| drosophila_melanogaster | CG33233 | FBGN0053233 |
| drosophila_melanogaster | CG33234 | FBGN0053234 |
| drosophila_melanogaster | Orct2 | FBGN0086365 |
| drosophila_melanogaster | CG42269 | FBGN0259164 |
| drosophila_melanogaster | CG44098 | FBGN0264907 |
| caenorhabditis_elegans | WBGENE00003837 | |
| caenorhabditis_elegans | oct-1 | WBGENE00003842 |
| caenorhabditis_elegans | WBGENE00003843 | |
| caenorhabditis_elegans | WBGENE00006220 | |
| caenorhabditis_elegans | WBGENE00008110 | |
| caenorhabditis_elegans | WBGENE00011456 | |
| caenorhabditis_elegans | WBGENE00014127 | |
| caenorhabditis_elegans | WBGENE00017751 | |
| caenorhabditis_elegans | WBGENE00019408 | |
| caenorhabditis_elegans | WBGENE00020701 | |
| caenorhabditis_elegans | WBGENE00044455 |
Paralogs (22): SLC22A16 (ENSG00000004809), SLC22A17 (ENSG00000092096), SLC22A2 (ENSG00000112499), SLC22A7 (ENSG00000137204), SLC22A23 (ENSG00000137266), SLC22A14 (ENSG00000144671), SLC22A3 (ENSG00000146477), SLC22A8 (ENSG00000149452), SLC22A9 (ENSG00000149742), SVOPL (ENSG00000157703), SVOP (ENSG00000166111), SLC22A11 (ENSG00000168065), SLC22A13 (ENSG00000172940), SLC22A1 (ENSG00000175003), SLC22A10 (ENSG00000184999), SLC22A25 (ENSG00000196600), SLC22A4 (ENSG00000197208), SLC22A5 (ENSG00000197375), SLC22A24 (ENSG00000197658), SLC22A12 (ENSG00000197891), SLC22A6 (ENSG00000197901), SLC22A31 (ENSG00000259803)
Protein
Protein identifiers
Solute carrier family 22 member 15 — Q8IZD6 (reviewed: Q8IZD6)
Alternative names: Fly-like putative transporter 1
All UniProt accessions (1): Q8IZD6
UniProt curated annotations — full annotation on UniProt →
Function. Organic zwitterion/cation transporter with apparent specificity for amino acids and their derivatives. Has low affinity for its substrates and may regulate their flux across the plasma membrane at high substrate concentrations. Bidirectionally transports carnitine and acetylcarnitine, possibly regulating their cytosolic abundance and further fatty acid catabolism via beta oxidation. Displays high transport activity toward zwitterionic substrates such as glycine betaine and diet-derived ergothioneine and carnosine. Can transport cations having an indole skeleton such as thiamine with lower efficiency. Does not transport agmatine. The transport mechanism, symport with sodium or facilitated diffusion allosterically regulated by sodium, remains to be elucidated.
Subcellular location. Cell membrane.
Tissue specificity. Expressed at highest levels in kidney and brain. Expressed at high levels in skeletal muscle, heart, liver, placenta and white blood cells. Expressed at moderate levels in lung and spleen. Expressed at low levels in thymus, small intestine and colon. Expressed in several intestinal tumor cell lines.
Post-translational modifications. N-glycosylated.
Activity regulation. Inhibited by gamma-aminobutyric acid and drugs including quinidine and levofloxacin.
Similarity. Belongs to the major facilitator (TC 2.A.1) superfamily. Organic cation transporter (TC 2.A.1.19) family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8IZD6-1 | 1 | yes |
| Q8IZD6-2 | 2 |
RefSeq proteins (1): NP_060890* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR005828 | MFS_sugar_transport-like | Family |
| IPR020846 | MFS_dom | Domain |
| IPR036259 | MFS_trans_sf | Homologous_superfamily |
Pfam: PF00083
Catalyzed reactions (Rhea), 8 shown:
- glycine betaine(in) = glycine betaine(out) (RHEA:28943)
- thiamine(in) = thiamine(out) (RHEA:34919)
- (R)-carnitine(in) = (R)-carnitine(out) (RHEA:34959)
- creatine(in) = creatine(out) (RHEA:73043)
- O-acetyl-(R)-carnitine(in) = O-acetyl-(R)-carnitine(out) (RHEA:74319)
- ergothioneine(in) = ergothioneine(out) (RHEA:76263)
- carnosine(in) = carnosine(out) (RHEA:76267)
- N,N-dimethylglycine(in) = N,N-dimethylglycine(out) (RHEA:76271)
UniProt features (22 total): transmembrane region 12, glycosylation site 4, splice variant 2, chain 1, region of interest 1, compositionally biased region 1, sequence variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8IZD6-F1 | 82.96 | 0.50 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Glycosylation sites (4): 58, 63, 80, 106
Function
Pathways and Gene Ontology
Reactome pathways
5 pathways
| ID | Pathway |
|---|---|
| R-HSA-549127 | SLC-mediated transport of organic cations |
| R-HSA-382551 | Transport of small molecules |
| R-HSA-425366 | |
| R-HSA-425407 | SLC-mediated transmembrane transport |
| R-HSA-549132 |
MSigDB gene sets: 119 (showing top):
GOBP_MODIFIED_AMINO_ACID_TRANSPORT, GOBP_AMINO_ACID_BETAINE_TRANSPORT, CADWELL_ATG16L1_TARGETS_DN, GOBP_QUATERNARY_AMMONIUM_GROUP_TRANSPORT, GOBP_AMINO_ACID_TRANSPORT, LIAO_METASTASIS, LIAO_HAVE_SOX4_BINDING_SITES, GOBP_TRANSMEMBRANE_TRANSPORT, GAVIN_FOXP3_TARGETS_CLUSTER_P4, MASSARWEH_TAMOXIFEN_RESISTANCE_UP, KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_UP, GOMF_MODIFIED_AMINO_ACID_TRANSMEMBRANE_TRANSPORTER_ACTIVITY, GOMF_TRANSPORTER_ACTIVITY, BRUINS_UVC_RESPONSE_LATE, FORTSCHEGGER_PHF8_TARGETS_DN
GO Biological Process (4): monoatomic ion transport (GO:0006811), amino acid transport (GO:0006865), amino-acid betaine transport (GO:0015838), transmembrane transport (GO:0055085)
GO Molecular Function (2): amino-acid betaine transmembrane transporter activity (GO:0015199), transmembrane transporter activity (GO:0022857)
GO Cellular Component (2): plasma membrane (GO:0005886), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| SLC-mediated transmembrane transport | 1 |
| Transport of small molecules | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| transport | 3 |
| quaternary ammonium group transport | 1 |
| modified amino acid transport | 1 |
| cellular process | 1 |
| quaternary ammonium group transmembrane transporter activity | 1 |
| amino-acid betaine transport | 1 |
| modified amino acid transmembrane transporter activity | 1 |
| transporter activity | 1 |
| transmembrane transport | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
750 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SLC22A15 | SLC67A1 | Q96BI1 | 627 |
| SLC22A15 | SLC15A1 | P46059 | 518 |
| SLC22A15 | SLC22A23 | A1A5C7 | 498 |
| SLC22A15 | SLC22A17 | Q8WUG5 | 476 |
| SLC22A15 | SLC35F5 | Q8WV83 | 472 |
| SLC22A15 | SLC25A34 | Q6PIV7 | 471 |
| SLC22A15 | SLC22A25 | Q6T423 | 469 |
| SLC22A15 | MAB21L3 | Q8N8X9 | 438 |
| SLC22A15 | SLC4A8 | Q2Y0W8 | 417 |
| SLC22A15 | SLC22A10 | Q63ZE4 | 411 |
| SLC22A15 | SLC22A14 | Q9Y267 | 404 |
| SLC22A15 | SLC28A1 | O00337 | 402 |
| SLC22A15 | FAM149A | A5PLN7 | 399 |
| SLC22A15 | SLC10A7 | Q0GE19 | 393 |
| SLC22A15 | AKAIN1 | P0CW23 | 391 |
IntAct
5 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SLC22A15 | VAPB | psi-mi:“MI:0914”(association) | 0.640 |
| SLC22A15 | ZFPL1 | psi-mi:“MI:0914”(association) | 0.530 |
| KCNE3 | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| SLC22A15 | C2CD2L | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (43): DPY19L4 (Affinity Capture-MS), GHDC (Affinity Capture-MS), SYVN1 (Affinity Capture-MS), CCPG1 (Affinity Capture-MS), SLC25A30 (Affinity Capture-MS), ANKRD13C (Affinity Capture-MS), ATP12A (Affinity Capture-MS), SELT (Affinity Capture-MS), CNNM1 (Affinity Capture-MS), LMBRD2 (Affinity Capture-MS), GUF1 (Affinity Capture-MS), ERGIC3 (Affinity Capture-MS), ERGIC2 (Affinity Capture-MS), PRKDC (Affinity Capture-MS), UFD1L (Affinity Capture-MS)
ESM2 similar proteins: A6NFX1, A6QQL0, D2HKB0, D3ZG27, F1NCD6, F1NJ67, O09014, O70496, O82390, P51798, P51799, Q17QZ3, Q1JQC1, Q32LQ6, Q3T9M1, Q3T9X0, Q3TIT8, Q4PKH3, Q504N2, Q58CV5, Q5F3N0, Q5R8G5, Q5RB09, Q5T4D3, Q5ZIT9, Q5ZKS8, Q66H95, Q68F72, Q69YG0, Q6AY78, Q6PDE8, Q7SY29, Q8BFQ6, Q8BG19, Q8GX78, Q8IVW8, Q8IZD6, Q8N697, Q8NCC5, Q8NEB5
Diamond homologs: A0A1D8PCL1, B8MYS7, K0E3U9, O42922, O74713, P0AEP1, P0AEP2, P10870, P13181, P13865, P18631, P23585, P32465, P32466, P38695, P39003, P39004, P39924, P40441, P40885, P40886, P43581, P47185, P49374, P53387, P53631, P54854, P54862, P58351, Q06222, Q09039, Q12300, Q46909, Q4WC50, Q504N2, Q7XA64, Q8IZD6, Q9FRL3, Q9LNV3, A0A3Q2IDB4
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
78 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 58 |
| Likely benign | 4 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2456 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:115976711:GCAG:G | donor_gain | 1.0000 |
| 1:115976712:CAGGT:C | donor_loss | 1.0000 |
| 1:115976714:GGT:G | donor_loss | 1.0000 |
| 1:115976715:G:C | donor_loss | 1.0000 |
| 1:115976715:G:GG | donor_gain | 1.0000 |
| 1:115976716:T:A | donor_loss | 1.0000 |
| 1:115992028:CAG:C | acceptor_loss | 1.0000 |
| 1:115992029:A:AG | acceptor_gain | 1.0000 |
| 1:115992029:AGC:A | acceptor_loss | 1.0000 |
| 1:115992030:G:GG | acceptor_gain | 1.0000 |
| 1:115992030:GCTC:G | acceptor_gain | 1.0000 |
| 1:115992030:GCTCT:G | acceptor_gain | 1.0000 |
| 1:115992239:CGGAG:C | donor_loss | 1.0000 |
| 1:115992240:GGAGG:G | donor_loss | 1.0000 |
| 1:115992241:G:GT | donor_gain | 1.0000 |
| 1:115992242:AGGT:A | donor_loss | 1.0000 |
| 1:115992243:GG:G | donor_loss | 1.0000 |
| 1:115992244:GTAA:G | donor_loss | 1.0000 |
| 1:115992245:T:G | donor_loss | 1.0000 |
| 1:116019580:A:AG | acceptor_gain | 1.0000 |
| 1:116019580:AGT:A | acceptor_gain | 1.0000 |
| 1:116019581:G:GA | acceptor_gain | 1.0000 |
| 1:116019581:GT:G | acceptor_gain | 1.0000 |
| 1:116019581:GTG:G | acceptor_gain | 1.0000 |
| 1:116019581:GTGGT:G | acceptor_gain | 1.0000 |
| 1:116027005:G:GA | donor_gain | 1.0000 |
| 1:116031515:G:GT | donor_gain | 1.0000 |
| 1:116066503:A:AG | acceptor_gain | 1.0000 |
| 1:116066504:C:G | acceptor_gain | 1.0000 |
| 1:116066519:GAA:G | acceptor_gain | 1.0000 |
AlphaMissense
3530 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:116035197:A:C | S319R | 0.999 |
| 1:116035199:C:A | S319R | 0.999 |
| 1:116035199:C:G | S319R | 0.999 |
| 1:116062882:G:T | R431M | 0.999 |
| 1:116019643:G:A | G121D | 0.998 |
| 1:116019655:G:A | G125E | 0.998 |
| 1:116019694:G:C | R138T | 0.998 |
| 1:116019694:G:T | R138M | 0.998 |
| 1:116019695:G:C | R138S | 0.998 |
| 1:116019695:G:T | R138S | 0.998 |
| 1:116020804:G:C | G173R | 0.998 |
| 1:116020805:G:A | G173D | 0.998 |
| 1:116062824:A:C | S412R | 0.998 |
| 1:116062826:T:A | S412R | 0.998 |
| 1:116062826:T:G | S412R | 0.998 |
| 1:116062882:G:C | R431T | 0.998 |
| 1:116019654:G:A | G125R | 0.997 |
| 1:116019654:G:C | G125R | 0.997 |
| 1:116020793:G:C | R169P | 0.997 |
| 1:116020837:T:C | F184L | 0.997 |
| 1:116020839:T:A | F184L | 0.997 |
| 1:116020839:T:G | F184L | 0.997 |
| 1:116020853:A:T | E189V | 0.997 |
| 1:116031388:T:A | W251R | 0.997 |
| 1:116031388:T:C | W251R | 0.997 |
| 1:116031418:G:C | A261P | 0.997 |
| 1:116062833:T:C | F415L | 0.997 |
| 1:116062835:T:A | F415L | 0.997 |
| 1:116062835:T:G | F415L | 0.997 |
| 1:116064457:T:G | C438W | 0.997 |
dbSNP variants (sampled 300 via entrez): RS1000025649 (1:116046421 G>C), RS1000058073 (1:116046233 AG>A), RS1000074365 (1:116033512 G>A,C,T), RS1000082460 (1:115993415 G>T), RS1000122115 (1:116019110 A>G), RS1000159940 (1:116036149 A>G), RS1000193071 (1:116069654 C>T), RS1000261904 (1:116018438 C>T), RS1000293059 (1:116018230 C>G), RS1000299795 (1:116032156 CT>C), RS1000328776 (1:116031821 C>T), RS1000382069 (1:115986984 T>A,C), RS1000387738 (1:115980599 A>T), RS1000407794 (1:116040227 A>C,G), RS1000430088 (1:116018753 T>C)
Disease associations
OMIM: gene MIM:608275 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004735_19 | Epstein-Barr virus copy number in lymphoblastoid cell lines | 1.000000e-06 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: transporter — Orphan or poorly characterized SLC22 family members
CTD chemical–gene interactions
56 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Cyclosporine | increases expression | 5 |
| Valproic Acid | affects cotreatment, increases expression, affects expression | 4 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| sodium arsenite | decreases expression, increases expression | 3 |
| Air Pollutants | increases expression, decreases expression, affects expression, increases abundance | 3 |
| Tetrachlorodibenzodioxin | decreases expression | 3 |
| mercuric bromide | increases expression, affects cotreatment | 2 |
| Nickel | decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| p-Chloromercuribenzoic Acid | affects cotreatment, increases expression | 2 |
| Particulate Matter | increases abundance, increases expression, decreases expression | 2 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | affects expression | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | increases expression | 1 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| manganese chloride | decreases expression | 1 |
| didecyldimethylammonium | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| pentabromodiphenyl ether | increases expression | 1 |
| tebuconazole | increases expression | 1 |
| perfluoro-n-nonanoic acid | increases expression | 1 |
| monomethylarsonous acid | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| 2,2’,4,4’,5-brominated diphenyl ether | increases expression | 1 |
| quinocetone | increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| bisphenol S | decreases expression | 1 |
| NSC 689534 | affects binding, increases expression | 1 |
| Temozolomide | decreases expression | 1 |
Cellosaurus cell lines
4 cell lines: 4 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D4S8 | HuH7-SLC22A15-KO-c7 | Cancer cell line | Male |
| CVCL_D4S9 | HuH7-SLC22A15-KO-c8 | Cancer cell line | Male |
| CVCL_TL96 | HAP1 SLC22A15 (-) 1 | Cancer cell line | Male |
| CVCL_XS96 | HAP1 SLC22A15 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Epstein-Barr virus infection