SLC24A3-AS1

Summary

SLC24A3-AS1 (SLC24A3 antisense RNA 1, HGNC:40540) is a long non-coding RNA gene on chromosome 20p11.23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40540
Approved symbol	SLC24A3-AS1
Name	SLC24A3 antisense RNA 1
Location	20p11.23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000179447
Ensembl biotype	lncRNA
Entrez	100130264
RNAcentral	URS00005E48A2 — lncRNA, 1789 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000319682

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000319682 — 8 exons

Exon	Start	End
ENSE00001220783	19283139	19283215
ENSE00001220792	19265733	19265999
ENSE00001220799	19284145	19284596
ENSE00001543752	19242302	19242574
ENSE00001543754	19243877	19244288
ENSE00001543755	19257629	19257695
ENSE00001543756	19261709	19261873
ENSE00001543757	19264078	19264153

Expression profiles

Bgee: expression breadth broad, 54 present calls, max score 79.38.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0091 / max 8.5706, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
186554	0.0091	3

Top tissues by expression

160 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.38	gold quality
mucosa of paranasal sinus	UBERON:0005030	76.97	gold quality
lower lobe of lung	UBERON:0008949	67.75	silver quality
superficial temporal artery	UBERON:0001614	66.51	gold quality
colonic epithelium	UBERON:0000397	66.21	silver quality
gingival epithelium	UBERON:0001949	60.75	gold quality
ventral tegmental area	UBERON:0002691	59.52	gold quality
cardia of stomach	UBERON:0001162	59.44	gold quality
tendon	UBERON:0000043	59.18	gold quality
lateral globus pallidus	UBERON:0002476	59.04	gold quality
quadriceps femoris	UBERON:0001377	59.00	gold quality
vastus lateralis	UBERON:0001379	58.85	gold quality
lateral nuclear group of thalamus	UBERON:0002736	58.79	gold quality
medulla oblongata	UBERON:0001896	58.35	gold quality
uterine cervix	UBERON:0000002	58.15	gold quality
epithelium of nasopharynx	UBERON:0001951	58.14	gold quality
dorsal root ganglion	UBERON:0000044	58.13	gold quality
nipple	UBERON:0002030	57.99	gold quality
substantia nigra pars compacta	UBERON:0001965	57.95	gold quality
tendon of biceps brachii	UBERON:0008188	57.87	gold quality
vena cava	UBERON:0004087	57.83	gold quality
pericardium	UBERON:0002407	57.65	gold quality
inferior vagus X ganglion	UBERON:0005363	57.65	gold quality
superior vestibular nucleus	UBERON:0007227	57.55	gold quality
putamen	UBERON:0001874	57.48	gold quality
lymph node	UBERON:0000029	57.31	gold quality
trigeminal ganglion	UBERON:0001675	57.31	gold quality
cardiac atrium	UBERON:0002081	57.30	gold quality
thymus	UBERON:0002370	57.21	gold quality
superior surface of tongue	UBERON:0007371	57.12	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	8.18

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.