SLC24A3-AS2

Summary

SLC24A3-AS2 (SLC24A3 antisense RNA 2, HGNC:40541) is a long non-coding RNA gene on chromosome 20p11.23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40541
Approved symbol	SLC24A3-AS2
Name	SLC24A3 antisense RNA 2
Location	20p11.23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232675
Ensembl biotype	lncRNA
Entrez	141585758

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 7 lncRNA, 1 retained_intron

ENST00000435992, ENST00000593770, ENST00000598694, ENST00000600889, ENST00000608187, ENST00000608476, ENST00000609610, ENST00000609846

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000435992 — 2 exons

Exon	Start	End
ENSE00001653443	19696616	19696770
ENSE00003044924	19693209	19693462

Expression profiles

Bgee: expression breadth ubiquitous, 114 present calls, max score 87.56.

Top tissues by expression

114 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	87.56	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	78.86	silver quality
ganglionic eminence	UBERON:0004023	71.73	gold quality
ventricular zone	UBERON:0003053	70.98	gold quality
bone marrow cell	CL:0002092	70.97	silver quality
lower esophagus mucosa	UBERON:0035834	67.83	gold quality
endometrium	UBERON:0001295	67.65	gold quality
cortical plate	UBERON:0005343	67.65	gold quality
skeletal muscle tissue	UBERON:0001134	66.66	gold quality
bone marrow	UBERON:0002371	63.47	gold quality
vermiform appendix	UBERON:0001154	63.11	gold quality
myometrium	UBERON:0001296	61.03	gold quality
left testis	UBERON:0004533	60.74	gold quality
right testis	UBERON:0004534	60.73	gold quality
testis	UBERON:0000473	60.65	gold quality
smooth muscle tissue	UBERON:0001135	60.05	gold quality
calcaneal tendon	UBERON:0003701	59.54	gold quality
islet of Langerhans	UBERON:0000006	58.88	gold quality
prefrontal cortex	UBERON:0000451	58.73	gold quality
urinary bladder	UBERON:0001255	58.36	gold quality
primary visual cortex	UBERON:0002436	58.33	gold quality
body of uterus	UBERON:0009853	57.99	gold quality
muscle of leg	UBERON:0001383	57.10	gold quality
tonsil	UBERON:0002372	56.85	gold quality
left uterine tube	UBERON:0001303	56.83	gold quality
blood	UBERON:0000178	56.29	gold quality
monocyte	CL:0000576	56.03	gold quality
uterine cervix	UBERON:0000002	55.58	gold quality
vagina	UBERON:0000996	55.53	gold quality
liver	UBERON:0002107	55.51	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.24

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.