SLC25A4
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Also known as T1AAC1
Summary
SLC25A4 (solute carrier family 25 member 4, HGNC:10990) is a protein-coding gene on chromosome 4q35.1, encoding ADP/ATP translocase 1 (P12235). ADP:ATP antiporter that mediates import of ADP into the mitochondrial matrix for ATP synthesis, and export of ATP out to fuel the cell.
This gene is a member of the mitochondrial carrier subfamily of solute carrier protein genes. The product of this gene functions as a gated pore that translocates ADP from the cytoplasm into the mitochondrial matrix and ATP from the mitochondrial matrix into the cytoplasm. The protein forms a homodimer embedded in the inner mitochondria membrane. Mutations in this gene have been shown to result in autosomal dominant progressive external opthalmoplegia and familial hypertrophic cardiomyopathy.
Source: NCBI Gene 291 — RefSeq curated summary.
At a glance
- Gene–disease (curated): mitochondrial DNA depletion syndrome 12B (cardiomyopathic type), autosomal recessive (Definitive, ClinGen) — +7 more curated relationships
- Clinical variants (ClinVar): 303 total — 13 pathogenic, 8 likely-pathogenic
- Phenotypes (HPO): 122
- Druggable target: yes
- MANE Select transcript:
NM_001151
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:10990 |
| Approved symbol | SLC25A4 |
| Name | solute carrier family 25 member 4 |
| Location | 4q35.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | T1, AAC1 |
| Ensembl gene | ENSG00000151729 |
| Ensembl biotype | protein_coding |
| OMIM | 103220 |
| Entrez | 291 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 9 protein_coding, 1 nonsense_mediated_decay
ENST00000281456, ENST00000491736, ENST00000889779, ENST00000889780, ENST00000889781, ENST00000928668, ENST00000948441, ENST00000948442, ENST00000948443, ENST00000948444
RefSeq mRNA: 1 — MANE Select: NM_001151
NM_001151
CCDS: CCDS34114
Canonical transcript exons
ENST00000281456 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001001423 | 185143266 | 185143483 |
| ENSE00001683990 | 185145759 | 185145899 |
| ENSE00003702771 | 185146814 | 185150382 |
| ENSE00003709956 | 185144764 | 185145250 |
Expression profiles
Bgee: expression breadth ubiquitous, 292 present calls, max score 99.88.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 44.4611 / max 2785.0257, expressed in 1715 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 50873 | 44.4611 | 1715 |
Top tissues by expression
297 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| left ventricle myocardium | UBERON:0006566 | 99.88 | gold quality |
| heart right ventricle | UBERON:0002080 | 99.85 | gold quality |
| apex of heart | UBERON:0002098 | 99.79 | gold quality |
| cardiac ventricle | UBERON:0002082 | 99.77 | gold quality |
| heart left ventricle | UBERON:0002084 | 99.77 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 99.77 | gold quality |
| body of tongue | UBERON:0011876 | 99.75 | gold quality |
| triceps brachii | UBERON:0001509 | 99.74 | gold quality |
| myocardium | UBERON:0002349 | 99.72 | gold quality |
| vastus lateralis | UBERON:0001379 | 99.70 | gold quality |
| diaphragm | UBERON:0001103 | 99.69 | gold quality |
| cardiac atrium | UBERON:0002081 | 99.69 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 99.68 | gold quality |
| right atrium auricular region | UBERON:0006631 | 99.68 | gold quality |
| quadriceps femoris | UBERON:0001377 | 99.66 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 99.63 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 99.58 | gold quality |
| biceps brachii | UBERON:0001507 | 99.57 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 99.55 | gold quality |
| gastrocnemius | UBERON:0001388 | 99.55 | gold quality |
| gluteal muscle | UBERON:0002000 | 99.43 | gold quality |
| deltoid | UBERON:0001476 | 99.38 | gold quality |
| vena cava | UBERON:0004087 | 99.38 | gold quality |
| heart | UBERON:0000948 | 99.29 | gold quality |
| muscle organ | UBERON:0001630 | 99.18 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 99.18 | gold quality |
| muscle of leg | UBERON:0001383 | 99.01 | gold quality |
| tibialis anterior | UBERON:0001385 | 99.00 | gold quality |
| muscle tissue | UBERON:0002385 | 98.88 | gold quality |
| pons | UBERON:0000988 | 98.76 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-134144 | yes | 29.29 |
| E-MTAB-8142 | yes | 17.08 |
| E-GEOD-135922 | yes | 13.07 |
| E-HCAD-10 | yes | 12.68 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): E2F4, MECP2, MYC, TFCP2, YY1
miRNA regulators (miRDB)
120 targeting SLC25A4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-10401-5P | 99.99 | 65.79 | 948 |
| HSA-MIR-3617-3P | 99.98 | 67.86 | 918 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-185-3P | 99.95 | 67.01 | 1743 |
| HSA-MIR-1236-3P | 99.94 | 68.04 | 1695 |
| HSA-MIR-95-5P | 99.89 | 72.17 | 3973 |
| HSA-MIR-7162-3P | 99.89 | 68.16 | 1682 |
| HSA-MIR-380-3P | 99.89 | 70.18 | 1978 |
| HSA-MIR-548E-5P | 99.89 | 72.73 | 4486 |
| HSA-MIR-6780A-5P | 99.88 | 66.69 | 2776 |
| HSA-MIR-12119 | 99.87 | 68.35 | 1653 |
| HSA-MIR-5582-3P | 99.86 | 72.48 | 4221 |
| HSA-MIR-369-3P | 99.85 | 70.52 | 2264 |
| HSA-MIR-202-3P | 99.84 | 71.41 | 1290 |
| HSA-MIR-4495 | 99.82 | 72.08 | 3080 |
| HSA-MIR-6842-5P | 99.80 | 67.54 | 1587 |
| HSA-MIR-7110-5P | 99.80 | 67.84 | 1712 |
| HSA-MIR-139-5P | 99.80 | 69.50 | 1399 |
| HSA-MIR-1273H-5P | 99.77 | 66.32 | 2471 |
| HSA-MIR-4679 | 99.76 | 69.19 | 1229 |
| HSA-MIR-556-3P | 99.74 | 68.75 | 1203 |
| HSA-MIR-4524A-3P | 99.72 | 66.85 | 2406 |
| HSA-MIR-4755-5P | 99.71 | 70.34 | 2716 |
| HSA-MIR-5006-3P | 99.71 | 70.26 | 2728 |
Literature-anchored findings (GeneRIF, showing 40)
- A114P missense mutation in the human Ant1 protein was found to be associated with autosomal dominant progressive external ophthalmoplegia (PMID:12140186)
- ANC1 is able to restore growth on a nonfermentable carbon source of a yeast mutant strain, and its N-terminal region proves important for its biogenesis and transport activity in yeast mitochondria. (PMID:12450408)
- Autosomal dominant external ophthalmoplegia and bipolar affective disorder associated with a mutation in the ANT1 gene. (PMID:12565915)
- Inhibition of the PT-pore (ANT-1) via up-regulation of cyclophilin D plays a role in tumorigenesis. (PMID:14729611)
- adenine nucleotide translocase 1-induced apoptosis requires nuclear factor B recruitment into mitochondria (PMID:15231833)
- Increased ANT1 expression and mitochondrial dysfunction may thus be initial events in facioscapulohumeral muscular dystrophy pathogenesis (PMID:15551024)
- report a novel heterozygous C to A transversion at nucleotide 269 in the ANT1 gene in a German family with Progressive External Ophthalmoplegia , predicted to convert a highly conserved alanine at codon 90 to aspartic acid. (PMID:15792871)
- After the training period, intracellular energetic units had a higher control of mitochondrial respiration by creatine linked to a more efficient functional coupling adenine nucleotide translocase-mitochondrial creatine kinase. (PMID:16020522)
- The altered isoform expression in DCM hearts entails changes in the kinetic properties of total ANT protein restricting ANT function and contributing to disturbed energy metabolism in DCM. (PMID:16107323)
- Dominant missense mutations were found in the gene encoding the heart and skeletal muscle-specific isoform of the adenine nucleotide translocator (ANT1) in families with autosomal dominant progressive external opthalmoplegia and in a sporadic patient (PMID:16155110)
- Results revealed that ANT1 and ANT3 (adenine nucleotide translocase 1-3) over-expressing HeLa cells increased their atRA sensitivity. (PMID:16556444)
- these data provide evidence for the involvement of ANT-1 and ANT-3 in the induction of the mitochondrial permeability transition pore and indicate the relevance of this phenomenon in ER-mitochondria Ca2+ transfer. (PMID:16887100)
- ANT1 and PolgammaA, which cause additive, deleterious effects on mtDNA maintenance and integrity,complex encephalomyopathy. (PMID:18504126)
- Data show that ANT1 has a role in determining familial progressive external ophthalmoplegia. (PMID:18575922)
- differently from normal myoblasts, the 4qA/B marker interacted directly with the promoters of the FRG1 and ANT1 genes in Facio-Scapulo-Humeral Dystrophy cells (PMID:18852887)
- the presence of the functionally inert catalytic domain alone was sufficient to cause the MT1-MMP to interact with ANT2, thus indicating that there is a non-proteolytic mode of these interactions (PMID:19232058)
- Association of the T(-365)C POLG1, G(-25)A ANT1 and G(-605)T PEO1 gene polymorphisms with diabetic polyneuropathy in patients with type 1 diabetes mellitus (PMID:19425506)
- There was no significant difference in slc25a4 mRNA expression between the AML patients with complete remission and those without remission. (PMID:19840444)
- PGC-1alpha regulates reactive oxygen species generation and apoptosis in endothelial cells by increasing fatty acid oxidation and enhancing ATP/ADP translocase activity. (PMID:19965780)
- Tyrosine phosphorylation by Src within the cavity of the adenine nucleotide translocase 1 regulates ADP/ATP exchange in mitochondria. (PMID:20007455)
- The heterologous expression of ANT1 on endothelial cell membrane enhances the tissue-type plasminogen activator binding ability of endothelial cells and enhances their fibrinolytic properties. (PMID:20160640)
- Data show that MeCP2 cooperates with YY1 in repressing the ANT1 gene encoding a mitochondrial adenine nucleotide translocase. (PMID:20504995)
- The reduction of ANT1 density below a physiological baseline impairs fundamental functions of this protein in ADF cells, leading them to undertake a cell death process. (PMID:20528917)
- The catalytic properties, gene expression and protein levels of certain proteins involved in mitochondrial ATP synthesis, such as F1F0-ATPase, ANT and AK, in human skin fibroblasts with trisomic karyotype, compared them with euploid fibroblasts. (PMID:20698827)
- The respiratory-dependent assembly of ANT1 differentially regulates Bax and Ca2+ mediated cytochrome c release. (PMID:21196320)
- mutant human ANT1 causes dominant mitochondrial defects characterized by decreased ADP-ATP exchange function and abnormal translocator reversal potential (PMID:21586654)
- This report expands the clinical spectrum of ANT1-related human diseases, and emphasises the crucial role of the mitochondrial ADP/ATP carriers in muscle function and pathophysiology of human myopathies. (PMID:22187496)
- Expression of ANT1 were lower in inclusion body myositis samples versus both polymyositis and controls (PMID:22350218)
- Compares and contrasts all the known human SLC25A* genes and includes functional information. (PMID:23266187)
- A 13-generation Mennonite pedigree with autosomal recessive myopathy and cardiomyopathy due to an SLC25A4 frameshift null mutation (c.523delC, p.Q175RfsX38), which codes for the heart-muscle isoform of the adenine nucleotide translocator-1, was studied. (PMID:23401503)
- elevated ANT1 expression supports EV infection and is associated with EV persistence, a condition with adverse prognosis. (PMID:24485628)
- Mitochondrial DNA (mtDNA) content plays an important role in energy production and sustaining normal physiological function. (PMID:24524965)
- Data suggest acetylation of ANT1 at lysines 10/23/92 has dramatic physiological effects on ADP-ATP exchange; extent of acetylation of lysine 23 decreases following physical activity; this change is highly dependent on insulin sensitivity/resistance. (PMID:24884163)
- Identification of ZNF555 as a putative transcriptional factor that impacts ANT1 promoter activity in facioscapulohumeral dystrophy myoblasts. (PMID:26184877)
- ANT1 confers sensitivity of the mitochondrial permeability transition pore to the electrochemical gradient. (PMID:27221760)
- A directed proteomic approach discovered the novel interaction of BKCa with Tom22, a component of the mitochondrion outer membrane import system, and the adenine nucleotide translocator (ANT). (PMID:27592226)
- identification by whole-exome sequencing of seven probands harboring dominant, de novo SLC25A4 mutations; all affected individuals presented at birth, were ventilator dependent and, where tested, revealed severe combined mitochondrial respiratory chain deficiencies associated with a marked loss of mitochondrial DNA copy number in skeletal muscle (PMID:27693233)
- NF-kappaB signalling may repress ANT1 gene transcription and impair mitochondrial functions. (PMID:28317877)
- Patients with SLC25A4 (ANT1) gene mutations present a common phenotype with exercise intolerance, hyperlactatemia, and hypertrophic cardiomyopathy. (PMID:28823815)
- Yeast aac2 R96H and aac2 R252G mutations are equivalent to R80H and R235G human ANT1 pathological mutations. mtDNA instability induced by aac2R96H and aac2R252G is rescued by N-acetylcysteine. (PMID:28947214)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | slc25a4 | ENSDARG00000027355 |
| mus_musculus | Slc25a4 | ENSMUSG00000031633 |
| rattus_norvegicus | Slc25a4 | ENSRNOG00000010830 |
Paralogs (49): SLC25A13 (ENSG00000004864), SLC25A5 (ENSG00000005022), SLC25A39 (ENSG00000013306), SLC25A40 (ENSG00000075303), SLC25A3 (ENSG00000075415), SLC25A43 (ENSG00000077713), SLC25A24 (ENSG00000085491), SLC25A1 (ENSG00000100075), SLC25A17 (ENSG00000100372), SLC25A14 (ENSG00000102078), SLC25A15 (ENSG00000102743), SLC25A11 (ENSG00000108528), UCP1 (ENSG00000109424), SLC25A36 (ENSG00000114120), SLC25A12 (ENSG00000115840), SLC25A2 (ENSG00000120329), SLC25A51 (ENSG00000122696), SLC25A16 (ENSG00000122912), SLC25A35 (ENSG00000125434), SLC25A19 (ENSG00000125454), SLC25A23 (ENSG00000125648), SLC25A47 (ENSG00000140107), SLC25A52 (ENSG00000141437), SLC25A38 (ENSG00000144659), SLC25A26 (ENSG00000144741), SLC25A48 (ENSG00000145832), SLC25A37 (ENSG00000147454), SLC25A25 (ENSG00000148339), SLC25A31 (ENSG00000151475), SLC25A27 (ENSG00000153291), SLC25A28 (ENSG00000155287), SLC25A44 (ENSG00000160785), SLC25A45 (ENSG00000162241), SLC25A34 (ENSG00000162461), SLC25A32 (ENSG00000164933), SLC25A6 (ENSG00000169100), SLC25A33 (ENSG00000171612), SLC25A30 (ENSG00000174032), UCP3 (ENSG00000175564), UCP2 (ENSG00000175567)
Protein
Protein identifiers
ADP/ATP translocase 1 — P12235 (reviewed: P12235)
Alternative names: ADP,ATP carrier protein 1, ADP,ATP carrier protein, heart/skeletal muscle isoform T1, Adenine nucleotide translocator 1, Solute carrier family 25 member 4
All UniProt accessions (3): P12235, A0A0S2Z3H3, V9GYG0
UniProt curated annotations — full annotation on UniProt →
Function. ADP:ATP antiporter that mediates import of ADP into the mitochondrial matrix for ATP synthesis, and export of ATP out to fuel the cell. Cycles between the cytoplasmic-open state (c-state) and the matrix-open state (m-state): operates by the alternating access mechanism with a single substrate-binding site intermittently exposed to either the cytosolic (c-state) or matrix (m-state) side of the inner mitochondrial membrane. Substrate exchange across the membrane occurs consecutively with one substrate being transported first, then dissociating from the substrate binding site before the second substrate binds for transport in the opposite direction. In addition to its ADP:ATP antiporter activity, also involved in mitochondrial uncoupling and mitochondrial permeability transition pore (mPTP) activity. Plays a role in mitochondrial uncoupling by acting as a proton transporter: proton transport uncouples the proton flows via the electron transport chain and ATP synthase to reduce the efficiency of ATP production and cause mitochondrial thermogenesis. Proton transporter activity is inhibited by ADP:ATP antiporter activity, suggesting that SLC25A4/ANT1 acts as a master regulator of mitochondrial energy output by maintaining a delicate balance between ATP production (ADP:ATP antiporter activity) and thermogenesis (proton transporter activity). Proton transporter activity requires free fatty acids as cofactor, but does not transport it. Also plays a key role in mPTP opening, a non-specific pore that enables free passage of the mitochondrial membranes to solutes of up to 1.5 kDa, and which contributes to cell death. It is however unclear if SLC25A4/ANT1 constitutes a pore-forming component of mPTP or regulates it. Acts as a regulator of mitophagy independently of ADP:ATP antiporter activity: promotes mitophagy via interaction with TIMM44, leading to inhibit the presequence translocase TIMM23, thereby promoting stabilization of PINK1.
Subunit / interactions. Monomer. Found in a complex with ARL2, ARL2BP and SLC25A4/ANT1. Interacts with ARL2BP. Interacts with ARHGAP11B, thereby inhibiting the mitochondrial permeability transition pore (mPTP). Interacts with TIMM44; leading to inhibit the presequence translocase TIMM23, thereby promoting stabilization of PINK1. (Microbial infection) Interacts with HIV-1 Vpr.
Subcellular location. Mitochondrion inner membrane. Membrane.
Tissue specificity. Expressed in erythrocytes (at protein level).
Post-translational modifications. Under cell death induction, transglutaminated by TGM2. Transglutamination leads to formation of covalent cross-links between a glutamine and the epsilon-amino group of a lysine residue, forming polymers.
Disease relevance. Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant, 2 (PEOA2) [MIM:609283] A disorder characterized by progressive weakness of ocular muscles and levator muscle of the upper eyelid. In a minority of cases, it is associated with skeletal myopathy, which predominantly involves axial or proximal muscles and which causes abnormal fatigability and even permanent muscle weakness. Ragged-red fibers and atrophy are found on muscle biopsy. A large proportion of chronic ophthalmoplegias are associated with other symptoms, leading to a multisystemic pattern of this disease. Additional symptoms are variable, and may include cataracts, hearing loss, sensory axonal neuropathy, ataxia, depression, hypogonadism, and parkinsonism. The disease is caused by variants affecting the gene represented in this entry. Mitochondrial DNA depletion syndrome 12B, cardiomyopathic type (MTDPS12B) [MIM:615418] An autosomal recessive mitochondrial disorder characterized by childhood onset of slowly progressive hypertrophic cardiomyopathy and generalized skeletal myopathy resulting in exercise intolerance and, in some patients, muscle weakness and atrophy. Skeletal muscle biopsy shows ragged red fibers, mtDNA depletion, and accumulation of abnormal mitochondria. The disease is caused by variants affecting the gene represented in this entry. Mitochondrial DNA depletion syndrome 12A, cardiomyopathic type (MTDPS12A) [MIM:617184] An autosomal dominant mitochondrial disorder characterized by severe hypotonia due to mitochondrial dysfunction apparent at birth. Affected infants have respiratory insufficiency requiring mechanical ventilation and have poor or no motor development. Many die in infancy, and those that survive have profound hypotonia with significant muscle weakness and inability to walk independently. Some patients develop hypertrophic cardiomyopathy. Muscle samples show mtDNA depletion and severe combined mitochondrial respiratory chain deficiencies. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. The matrix-open state (m-state) is inhibited by the membrane-permeable bongkrekic acid (BKA) PubMed:23173940. The cytoplasmic-open state (c-state) is inhibited by the membrane-impermeable toxic inhibitor carboxyatractyloside (CATR). Proton transporter activity is inhibited by ADP:ATP antiporter activity.
Domain organisation. The transmembrane helices are not perpendicular to the plane of the membrane, but cross the membrane at an angle. Odd-numbered transmembrane helices exhibit a sharp kink, due to the presence of a conserved proline residue.
Similarity. Belongs to the mitochondrial carrier (TC 2.A.29) family.
RefSeq proteins (1): NP_001142* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002067 | MCP | Family |
| IPR002113 | ADT_euk_type | Family |
| IPR018108 | MCP_transmembrane | Repeat |
| IPR023395 | MCP_dom_sf | Homologous_superfamily |
Pfam: PF00153
Catalyzed reactions (Rhea), 2 shown:
- H(+)(in) = H(+)(out) (RHEA:34979)
- ADP(in) + ATP(out) = ADP(out) + ATP(in) (RHEA:34999)
UniProt features (43 total): sequence variant 10, topological domain 7, modified residue 7, transmembrane region 6, repeat 3, binding site 3, sequence conflict 3, initiator methionine 1, chain 1, region of interest 1, short sequence motif 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P12235-F1 | 92.07 | 0.71 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (3): 80; 92; 235
Post-translational modifications (7): 2, 7, 52, 147, 160, 245, 272
Function
Pathways and Gene Ontology
Reactome pathways
16 pathways
| ID | Pathway |
|---|---|
| R-HSA-1268020 | Mitochondrial protein import |
| R-HSA-166187 | Mitochondrial Uncoupling |
| R-HSA-180897 | Vpr-mediated induction of apoptosis by mitochondrial outer membrane permeabilization |
| R-HSA-83936 | Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane |
| R-HSA-1428517 | Aerobic respiration and respiratory electron transport |
| R-HSA-1430728 | Metabolism |
| R-HSA-162906 | HIV Infection |
| R-HSA-162909 | Host Interactions of HIV factors |
| R-HSA-1643685 | Disease |
| R-HSA-176033 | Interactions of Vpr with host cellular proteins |
| R-HSA-382551 | Transport of small molecules |
| R-HSA-425397 | Transport of vitamins, nucleosides, and related molecules |
| R-HSA-425407 | SLC-mediated transmembrane transport |
| R-HSA-5663205 | Infectious disease |
| R-HSA-9609507 | Protein localization |
| R-HSA-9824446 | Viral Infection Pathways |
MSigDB gene sets: 548 (showing top):
GOBP_REGULATION_OF_AUTOPHAGY, REACTOME_INTERACTIONS_OF_VPR_WITH_HOST_CELLULAR_PROTEINS, BASSO_B_LYMPHOCYTE_NETWORK, XU_GH1_AUTOCRINE_TARGETS_UP, ATACCTC_MIR202, DACOSTA_UV_RESPONSE_VIA_ERCC3_UP, TGACCTY_ERR1_Q2, MEF2_02, RIZKI_TUMOR_INVASIVENESS_3D_DN, GOBP_MITOCHONDRIAL_TRANSPORT, GOBP_NUCLEOTIDE_TRANSPORT, GOBP_MONOATOMIC_CATION_TRANSPORT, GOBP_MACROAUTOPHAGY, SRF_Q5_01, GOBP_ORGANOPHOSPHATE_ESTER_TRANSPORT
GO Biological Process (14): generation of precursor metabolites and energy (GO:0006091), apoptotic mitochondrial changes (GO:0008637), ADP transport (GO:0015866), regulation of mitochondrial membrane permeability (GO:0046902), negative regulation of necroptotic process (GO:0060546), mitochondrial ADP transmembrane transport (GO:0140021), negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway (GO:1901029), positive regulation of mitophagy (GO:1901526), mitochondrial ATP transmembrane transport (GO:1990544), adaptive thermogenesis (GO:1990845), obsolete mitochondrial genome maintenance (GO:0000002), adenine transport (GO:0015853), transmembrane transport (GO:0055085), proton transmembrane transport (GO:1902600)
GO Molecular Function (6): ATP:ADP antiporter activity (GO:0005471), proton transmembrane transporter activity (GO:0015078), adenine transmembrane transporter activity (GO:0015207), oxidative phosphorylation uncoupler activity (GO:0017077), protein binding (GO:0005515), antiporter activity (GO:0015297)
GO Cellular Component (6): mitochondrion (GO:0005739), mitochondrial inner membrane (GO:0005743), mitochondrial permeability transition pore complex (GO:0005757), plasma membrane (GO:0005886), membrane (GO:0016020), mitochondrial membrane (GO:0031966)
Reactome top-level categories
Rollup of top-12 pathways:
| Category | Pathways |
|---|---|
| Protein localization | 1 |
| Aerobic respiration and respiratory electron transport | 1 |
| Interactions of Vpr with host cellular proteins | 1 |
| Transport of vitamins, nucleosides, and related molecules | 1 |
| Metabolism | 1 |
| Viral Infection Pathways | 1 |
| HIV Infection | 1 |
| Host Interactions of HIV factors | 1 |
| SLC-mediated transmembrane transport | 1 |
| Transport of small molecules | 1 |
| Disease | 1 |
| Infectious disease | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| purine-containing compound transmembrane transport | 2 |
| nucleotide transmembrane transport | 2 |
| proton transmembrane transport | 2 |
| mitochondrial envelope | 2 |
| metabolic process | 1 |
| apoptotic process | 1 |
| mitochondrion organization | 1 |
| purine ribonucleotide transport | 1 |
| adenine nucleotide transport | 1 |
| regulation of membrane permeability | 1 |
| regulation of necroptotic process | 1 |
| negative regulation of programmed necrotic cell death | 1 |
| necroptotic process | 1 |
| ADP transport | 1 |
| negative regulation of organelle organization | 1 |
| negative regulation of mitochondrial membrane permeability | 1 |
| mitochondrial outer membrane permeabilization | 1 |
| regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway | 1 |
| negative regulation of apoptotic signaling pathway | 1 |
| mitophagy | 1 |
| positive regulation of macroautophagy | 1 |
| regulation of mitophagy | 1 |
| positive regulation of autophagy of mitochondrion | 1 |
| ATP transport | 1 |
| temperature homeostasis | 1 |
| purine nucleobase transport | 1 |
| transport | 1 |
| cellular process | 1 |
| monoatomic cation transmembrane transport | 1 |
| ATP transmembrane transporter activity | 1 |
| ADP transmembrane transporter activity | 1 |
| antiporter activity | 1 |
| monoatomic cation transmembrane transporter activity | 1 |
| purine nucleobase transmembrane transporter activity | 1 |
| adenine transport | 1 |
| transmembrane transporter activity | 1 |
| binding | 1 |
| secondary active transmembrane transporter activity | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
2619 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SLC25A4 | PPIF | P30405 | 977 |
| SLC25A4 | POLG | P54098 | 942 |
| SLC25A4 | TP53 | P04637 | 924 |
| SLC25A4 | TWNK | Q96RR1 | 921 |
| SLC25A4 | POLG2 | Q9UHN1 | 911 |
| SLC25A4 | RRM2B | Q7LG56 | 838 |
| SLC25A4 | NKAIN2 | Q5VXU1 | 720 |
| SLC25A4 | VDAC1 | P21796 | 705 |
| SLC25A4 | MYL3 | P08590 | 667 |
| SLC25A4 | VDAC3 | Q9Y277 | 660 |
| SLC25A4 | SLC25A3 | Q00325 | 653 |
| SLC25A4 | SENP6 | Q9GZR1 | 649 |
| SLC25A4 | DGUOK | P78532 | 647 |
| SLC25A4 | PRKAG2 | Q9UGJ0 | 635 |
| SLC25A4 | MYBPC3 | Q14896 | 593 |
IntAct
168 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MAP3K14 | CHUK | psi-mi:“MI:0914”(association) | 0.950 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| MAPK7 | PFDN6 | psi-mi:“MI:0914”(association) | 0.640 |
| NME3 | NME4 | psi-mi:“MI:0914”(association) | 0.640 |
| SLC25A4 | SLC25A6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SLC25A4 | LRRK2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NEURL4 | APBB1 | psi-mi:“MI:0914”(association) | 0.530 |
| PRKCZ | IPO5 | psi-mi:“MI:0914”(association) | 0.530 |
| HLA-DPA1 | TYW5 | psi-mi:“MI:0914”(association) | 0.530 |
| ISLR | BCKDK | psi-mi:“MI:0914”(association) | 0.530 |
| TMEM9 | ESYT2 | psi-mi:“MI:0914”(association) | 0.530 |
| TNFSF8 | LGALS8 | psi-mi:“MI:0914”(association) | 0.530 |
| APLNR | SLC33A1 | psi-mi:“MI:0914”(association) | 0.530 |
| NPTN | TNPO2 | psi-mi:“MI:0914”(association) | 0.530 |
| AAR2 | SNRNP200 | psi-mi:“MI:0914”(association) | 0.530 |
| SLC25A6 | HRAS | psi-mi:“MI:0914”(association) | 0.530 |
| NEK4 | SLC25A4 | psi-mi:“MI:0914”(association) | 0.510 |
| AR | FOXH1 | psi-mi:“MI:0915”(physical association) | 0.510 |
| BCL2L13 | SLC25A4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| NR4A1 | SLC25A4 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GPR107 | SLC25A4 | psi-mi:“MI:0915”(physical association) | 0.400 |
| TK2 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| SDC1 | ILVBL | psi-mi:“MI:0915”(physical association) | 0.400 |
| CFAP97 | CSNK2A1 | psi-mi:“MI:0914”(association) | 0.350 |
| PCNT | IMP4 | psi-mi:“MI:0914”(association) | 0.350 |
| NFKB1 | NFKB1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (298): SLC25A4 (Affinity Capture-RNA), SLC25A4 (Affinity Capture-RNA), SLC25A4 (Affinity Capture-MS), SLC25A4 (Affinity Capture-MS), ATP6V0D1 (Co-fractionation), SLC25A24 (Co-fractionation), SLC25A4 (Co-fractionation), TUBB4B (Co-fractionation), SLC25A4 (Affinity Capture-MS), SLC25A4 (Affinity Capture-MS), SLC25A4 (Affinity Capture-MS), SLC25A4 (Affinity Capture-MS), SLC25A4 (Affinity Capture-MS), FAF2 (Affinity Capture-Western), SLC25A4 (Affinity Capture-Western)
ESM2 similar proteins: A6QR09, F1R4U0, F1RFX9, O43772, O46373, O77792, O95258, O97562, O97649, P02722, P05141, P12235, P12236, P22292, P32007, P32089, P48962, P51881, P53007, P55851, P70406, P79110, P97700, Q000K2, Q02978, Q05962, Q08DK4, Q09073, Q3SZI5, Q5PQM9, Q5R5A1, Q5R5A8, Q5SVS4, Q5U680, Q5XGI1, Q6GQ22, Q6QRN9, Q70HW3, Q8HXE3, Q8HXY2
Diamond homologs: A0A1D6N272, A1DI57, A2A3V2, A2ASZ8, A2CEQ0, A5PJZ1, B0G159, B4F8I5, B4FIJ0, B8ZHC9, F1LX07, F4HW79, F4JU70, K7VYZ9, O04619, O18757, O65023, O75746, O81845, O94502, O97649, P04710, P05141, P0C546, P0CI40, P12235, P12857, P16260, P16261, P25083, P29518, P31167, P31691, P40941, P48962, P55916, Q01888, Q05AQ3, Q0II44, Q0P483
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| TSPO2 | “up-regulates activity” | SLC25A4 | binding |
| PTPN11 | “down-regulates activity” | SLC25A4 | dephosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 213 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| FCERI mediated MAPK activation | 6 | 15.1× | 2e-03 |
| Generation of second messenger molecules | 5 | 12.5× | 9e-03 |
| Downstream TCR signaling | 8 | 7.4× | 4e-03 |
| Interferon gamma signaling | 8 | 7.3× | 4e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| peptide antigen assembly with MHC class II protein complex | 5 | 28.5× | 9e-04 |
| positive regulation of T cell activation | 6 | 14.4× | 3e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
303 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 13 |
| Likely pathogenic | 8 |
| Uncertain significance | 157 |
| Likely benign | 81 |
| Benign | 32 |
Top pathogenic / likely-pathogenic (21)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1451765 | NM_001151.4(SLC25A4):c.263dup (p.Asn88fs) | Pathogenic |
| 18245 | NM_001151.4(SLC25A4):c.340G>C (p.Ala114Pro) | Pathogenic |
| 18246 | NM_001151.4(SLC25A4):c.865G>A (p.Val289Met) | Pathogenic |
| 18247 | NM_001151.4(SLC25A4):c.293T>C (p.Leu98Pro) | Pathogenic |
| 2019911 | NM_001151.4(SLC25A4):c.131_134dup (p.Ser46fs) | Pathogenic |
| 2098505 | NM_001151.4(SLC25A4):c.107dup (p.Gln37fs) | Pathogenic |
| 2113960 | NM_001151.4(SLC25A4):c.253C>T (p.Gln85Ter) | Pathogenic |
| 215174 | NM_001151.4(SLC25A4):c.523del (p.Gln175fs) | Pathogenic |
| 253037 | NM_001151.4(SLC25A4):c.239G>A (p.Arg80His) | Pathogenic |
| 253038 | NM_001151.4(SLC25A4):c.703C>G (p.Arg235Gly) | Pathogenic |
| 268149 | NM_001151.4(SLC25A4):c.116_137del (p.Gln39fs) | Pathogenic |
| 268150 | NM_001151.4(SLC25A4):c.707G>C (p.Arg236Pro) | Pathogenic |
| 66011 | NM_001151.4(SLC25A4):c.111+1G>A | Pathogenic |
| 18248 | NM_001151.4(SLC25A4):c.311A>G (p.Asp104Gly) | Likely pathogenic |
| 215172 | NM_001151.4(SLC25A4):c.832G>A (p.Val278Met) | Likely pathogenic |
| 3572858 | NM_001151.4(SLC25A4):c.46_47del (p.Gly16fs) | Likely pathogenic |
| 3767159 | NM_001151.4(SLC25A4):c.423G>C (p.Leu141Phe) | Likely pathogenic |
| 3778708 | NM_001151.4(SLC25A4):c.599-11_621del | Likely pathogenic |
| 452160 | NM_001151.4(SLC25A4):c.98A>C (p.Lys33Thr) | Likely pathogenic |
| 635018 | NM_001151.4(SLC25A4):c.238C>G (p.Arg80Gly) | Likely pathogenic |
| 994105 | NM_001151.4(SLC25A4):c.256_263del (p.Ala86fs) | Likely pathogenic |
SpliceAI
859 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 4:185143481:CAGGT:C | donor_loss | 1.0000 |
| 4:185145896:GGGG:G | donor_gain | 1.0000 |
| 4:185145897:G:GT | donor_gain | 1.0000 |
| 4:185145897:GGG:G | donor_gain | 1.0000 |
| 4:185145898:GG:G | donor_gain | 1.0000 |
| 4:185145898:GGG:G | donor_gain | 1.0000 |
| 4:185145899:GG:G | donor_gain | 1.0000 |
| 4:185143480:GCAG:G | donor_gain | 0.9900 |
| 4:185143484:G:GG | donor_gain | 0.9900 |
| 4:185145249:GG:G | donor_gain | 0.9900 |
| 4:185145250:GG:G | donor_gain | 0.9900 |
| 4:185145757:AGG:A | acceptor_gain | 0.9900 |
| 4:185145758:GGG:G | acceptor_gain | 0.9900 |
| 4:185145900:G:GG | donor_gain | 0.9900 |
| 4:185146812:A:AG | acceptor_gain | 0.9900 |
| 4:185146813:G:GG | acceptor_gain | 0.9900 |
| 4:185145757:A:AG | acceptor_gain | 0.9800 |
| 4:185145757:AG:A | acceptor_gain | 0.9800 |
| 4:185145758:G:GG | acceptor_gain | 0.9800 |
| 4:185145758:GG:G | acceptor_gain | 0.9800 |
| 4:185145897:GGGGT:G | donor_loss | 0.9800 |
| 4:185145898:GGGT:G | donor_loss | 0.9800 |
| 4:185145901:T:A | donor_loss | 0.9800 |
| 4:185146812:AGCC:A | acceptor_gain | 0.9800 |
| 4:185146813:GCCG:G | acceptor_gain | 0.9800 |
| 4:185145754:CACA:C | acceptor_loss | 0.9700 |
| 4:185145757:A:AT | acceptor_loss | 0.9700 |
| 4:185145758:GGGAT:G | acceptor_gain | 0.9700 |
| 4:185146813:GCC:G | acceptor_gain | 0.9700 |
| 4:185146900:TCCA:T | donor_gain | 0.9700 |
AlphaMissense
1968 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 4:185143418:G:C | G16R | 1.000 |
| 4:185143464:G:T | R31M | 1.000 |
| 4:185143473:T:C | L34P | 1.000 |
| 4:185144822:G:A | C57Y | 1.000 |
| 4:185144823:T:G | C57W | 1.000 |
| 4:185144869:G:C | G73R | 1.000 |
| 4:185144870:G:A | G73D | 1.000 |
| 4:185144870:G:T | G73V | 1.000 |
| 4:185144874:C:A | N74K | 1.000 |
| 4:185144874:C:G | N74K | 1.000 |
| 4:185144918:T:C | F89S | 1.000 |
| 4:185145011:G:A | G120D | 1.000 |
| 4:185145014:G:A | G121E | 1.000 |
| 4:185145020:C:A | A123D | 1.000 |
| 4:185145022:G:A | G124R | 1.000 |
| 4:185145022:G:C | G124R | 1.000 |
| 4:185145022:G:T | G124W | 1.000 |
| 4:185145023:G:A | G124E | 1.000 |
| 4:185145055:G:C | D135H | 1.000 |
| 4:185145065:G:T | R138M | 1.000 |
| 4:185145112:T:C | F154L | 1.000 |
| 4:185145114:C:A | F154L | 1.000 |
| 4:185145114:C:G | F154L | 1.000 |
| 4:185145132:T:G | C160W | 1.000 |
| 4:185145178:G:C | G176R | 1.000 |
| 4:185145215:G:C | R188T | 1.000 |
| 4:185145215:G:T | R188I | 1.000 |
| 4:185145226:T:C | F192L | 1.000 |
| 4:185145227:T:C | F192S | 1.000 |
| 4:185145227:T:G | F192C | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000660709 (4:185147106 C>A,G), RS1001043282 (4:185148328 G>A), RS1001161277 (4:185141927 T>C,G), RS1001270955 (4:185145448 G>A), RS1001275923 (4:185142120 T>A), RS1001491883 (4:185148169 T>C), RS1001728355 (4:185145107 G>A,C,T), RS10024068 (4:185142187 G>A,T), RS1002489462 (4:185149748 G>A), RS1002582984 (4:185149743 C>A), RS1003102856 (4:185149167 C>T), RS1003109201 (4:185147046 T>C,G), RS1003572853 (4:185146562 G>A), RS1003618782 (4:185143308 C>G,T), RS1003669844 (4:185143234 G>A)
Disease associations
OMIM: gene MIM:103220 | disease phenotypes: MIM:617184, MIM:609283, MIM:615418, MIM:160700, MIM:192600
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| mitochondrial DNA depletion syndrome 12B (cardiomyopathic type), autosomal recessive | Definitive | Autosomal recessive |
| mitochondrial disease | Definitive | Autosomal recessive |
| progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 2 | Strong | Autosomal dominant |
| mitochondrial DNA depletion syndrome 12A (cardiomyopathic type), autosomal dominant | Strong | Autosomal dominant |
| Fontaine progeroid syndrome | Strong | Autosomal dominant |
| Sengers syndrome | Supportive | Autosomal recessive |
| autosomal dominant progressive external ophthalmoplegia | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Leigh syndrome | Limited | AD |
| mitochondrial DNA depletion syndrome 12B (cardiomyopathic type), autosomal recessive | Definitive | AR |
Mondo (12): mitochondrial DNA depletion syndrome 12A (cardiomyopathic type), autosomal dominant (MONDO:0014959), progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 2 (MONDO:0012238), mitochondrial DNA depletion syndrome 12B (cardiomyopathic type), autosomal recessive (MONDO:0014175), myopia (MONDO:0001384), hypertrophic cardiomyopathy (MONDO:0005045), inborn mitochondrial myopathy (MONDO:0009637), mitochondrial disease (MONDO:0044970), familial hypertrophic cardiomyopathy (MONDO:0024573), restrictive cardiomyopathy (MONDO:0005201), Sengers syndrome (MONDO:0008922), autosomal dominant progressive external ophthalmoplegia (MONDO:0008003), Fontaine progeroid syndrome (MONDO:0012853)
Orphanet (7): Congenital cataract-hypertrophic cardiomyopathy-mitochondrial myopathy syndrome (Orphanet:1369), Mitochondrial myopathy (Orphanet:206966), Rare hypertrophic cardiomyopathy (Orphanet:217569), Mitochondrial disease (Orphanet:68380), Rare familial disorder with hypertrophic cardiomyopathy (Orphanet:99739), Restrictive cardiomyopathy (Orphanet:217632), NON RARE IN EUROPE: Familial isolated hypertrophic cardiomyopathy (Orphanet:155)
HPO phenotypes
122 total (30 of 122 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000017 | Nocturia |
| HP:0000338 | Hypomimic face |
| HP:0000365 | Hearing impairment |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000486 | Strabismus |
| HP:0000496 | Abnormality of eye movement |
| HP:0000501 | Glaucoma |
| HP:0000505 | Visual impairment |
| HP:0000508 | Ptosis |
| HP:0000512 | Abnormal electroretinogram |
| HP:0000518 | Cataract |
| HP:0000544 | External ophthalmoplegia |
| HP:0000545 | Myopia |
| HP:0000590 | Progressive external ophthalmoplegia |
| HP:0000597 | Ophthalmoparesis |
| HP:0000602 | Ophthalmoplegia |
| HP:0000639 | Nystagmus |
| HP:0000716 | Depression |
| HP:0000739 | Anxiety |
| HP:0000819 | Diabetes mellitus |
| HP:0000821 | Hypothyroidism |
| HP:0000836 | Hyperthyroidism |
| HP:0000853 | Goiter |
| HP:0000939 | Osteoporosis |
| HP:0000969 | Edema |
| HP:0001131 | Corneal dystrophy |
| HP:0001250 | Seizure |
| HP:0001251 | Ataxia |
GWAS associations
0 associations (top):
MeSH disease descriptors (8)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002312 | Cardiomyopathy, Hypertrophic | C14.280.238.100; C14.280.484.048.750.070.160 |
| D024741 | Cardiomyopathy, Hypertrophic, Familial | C14.280.238.100.500; C14.280.484.048.750.070.160.500; C16.320.160 |
| D002313 | Cardiomyopathy, Restrictive | C14.280.238.160 |
| D017240 | Mitochondrial Myopathies | C05.651.460; C10.668.491.500; C18.452.660.560 |
| D009216 | Myopia | C11.744.636 |
| C538280 | Cataract and cardiomyopathy (supp.) | |
| C563575 | Progressive External Ophthalmoplegia with Mitochondrial DNA Deletions, Autosomal Dominant, 1 (supp.) | |
| C563750 | Progressive External Ophthalmoplegia with Mitochondrial DNA Deletions, Autosomal Dominant, 2 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL1879 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: transporter — Mitochondrial nucleotide transporter subfamily
ChEMBL bioactivities
2 potent at pChembl≥5 of 3 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.79 | Kd | 1635 | nM | CHEMBL3752910 |
| 5.76 | ED50 | 1739 | nM | CHEMBL3752910 |
PubChem BioAssay actives
1 with measured affinity, of 4 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149410: Binding affinity to human SLC25A4 incubated for 45 mins by Kinobead based pull down assay | kd | 1.6354 | uM |
CTD chemical–gene interactions
60 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | increases methylation, decreases expression, increases expression, affects cotreatment | 5 |
| Valproic Acid | affects cotreatment, decreases expression, affects expression, increases expression | 5 |
| sodium arsenite | affects cotreatment, increases abundance, increases expression | 2 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 2 |
| Arsenic | increases expression, affects cotreatment, increases abundance | 2 |
| Cadmium | increases expression, increases response to substance | 2 |
| Calcitriol | increases expression, affects cotreatment | 2 |
| Doxorubicin | affects expression, increases expression | 2 |
| Okadaic Acid | affects expression, increases expression | 2 |
| dehydroabietylamine | affects activity | 1 |
| sodium arsenate | increases abundance, increases expression | 1 |
| trichostatin A | affects expression | 1 |
| beta-lapachone | increases expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| closantel | decreases activity | 1 |
| manganese chloride | affects cotreatment, increases abundance, increases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| azoxystrobin | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| CD 437 | decreases activity | 1 |
| deguelin | decreases expression | 1 |
| bisphenol B | increases expression | 1 |
| pyrachlostrobin | increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| LDN 193189 | affects cotreatment, decreases expression | 1 |
| (+)-JQ1 compound | increases expression | 1 |
| bisphenol AF | increases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5652452 | Binding | Binding affinity to human SLC25A4 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
9 cell lines: 7 cancer cell line, 2 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_C7DK | Abcam A-549 SLC25A4 KO | Cancer cell line | Male |
| CVCL_C7EB | Abcam HCT 116 SLC25A4 KO | Cancer cell line | Male |
| CVCL_D4K7 | HCT116-SLC25A4-KO-c10 | Cancer cell line | Male |
| CVCL_D4K8 | HCT116-SLC25A4-KO-c8 | Cancer cell line | Male |
| CVCL_D8AE | Ubigene A-549 SLC25A4 KO | Cancer cell line | Male |
| CVCL_D9RS | Ubigene HEK293 SLC25A4 KO | Transformed cell line | Female |
| CVCL_IN36 | GM25268 | Transformed cell line | Female |
| CVCL_TM44 | HAP1 SLC25A4 (-) 1 | Cancer cell line | Male |
| CVCL_TM45 | HAP1 SLC25A4 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
403 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03351998 | PHASE4 | COMPLETED | Impact of Statin Therapy on Muscle Mitochondrial Function and Aerobic Capacity |
| NCT00347204 | PHASE4 | COMPLETED | Comparison of Acular LS Versus Nevanac for Pain Control in Eyes Undergoing PRK |
| NCT00349843 | PHASE4 | COMPLETED | Investigation of Multi-Purpose Solution-Based Corneal Staining and Ocular Comfort |
| NCT00349882 | PHASE4 | COMPLETED | Effects of Contact Lens Care Regimens on the Corneal Epithelium |
| NCT00350246 | PHASE4 | COMPLETED | Long-term Effects of Laser Refractive Surgery |
| NCT00404105 | PHASE4 | COMPLETED | A Comparison of PRK and LASIK for Correction of Myopia |
| NCT00455455 | PHASE4 | COMPLETED | Corneal and Conjunctival Sensitivity and Staining Study |
| NCT00541177 | PHASE4 | UNKNOWN | Study of Myopia Prevention in Children With Low Concentration of Atropine |
| NCT00627302 | PHASE4 | COMPLETED | Efficacy of PEG-400 and Systane Artificial Tears (Alcon) on Quality of Vision |
| NCT00640341 | PHASE4 | COMPLETED | Comparative Performance of PureVision, Acuvue Oasys and O2Optix |
| NCT00770094 | PHASE4 | UNKNOWN | Multi Laser Platform Comparison Study for LASIK |
| NCT00821236 | PHASE4 | COMPLETED | Contralateral Comparison of Three Excimer Laser Systems in Performing LASIK |
| NCT00889941 | PHASE4 | COMPLETED | Effect of Preoperative Pupil Size on Quality of Vision After Wavefront-Guided LASIK |
| NCT00937105 | PHASE4 | COMPLETED | Daily Wear Corneal Infiltrative Event Study |
| NCT01173198 | PHASE4 | COMPLETED | An Evaluation of Outcomes Following Wavefront Optimized or Wavefront Guided Lasik Procedure in Low to Moderate Myopic Patients |
| NCT01250925 | PHASE4 | COMPLETED | Effect of Contact Lens Wear on Immune Cell Density and Morphology of the Ocular Surface |
| NCT01387360 | PHASE4 | COMPLETED | Presbyopic Supracor Treatment for Near Myopic/Hyperopic Pseudophakic Eyes |
| NCT01454843 | PHASE4 | COMPLETED | LASIK Using the Alcon Allegretto Wavefront-Guided Excimer Laser vs AMO Visx Wavefront-Guided Excimer Laser |
| NCT01693939 | PHASE4 | COMPLETED | Evaluation of the Post-LASIK Flap Thickness of the FS200 Femtosecond Laser Flap |
| NCT01706237 | PHASE4 | WITHDRAWN | Visual Outcomes And Contrast Sensitivity After Myopic Wavefront-Optimized Lasik With Nexisvision Shield Or Bandage Contact Lens |
| NCT01746589 | PHASE4 | COMPLETED | Visual Outcomes and Contrast Sensitivity After Myopic LASIK |
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Related Atlas pages
- Associated diseases: progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 2, mitochondrial DNA depletion syndrome 12B (cardiomyopathic type), autosomal recessive, mitochondrial DNA depletion syndrome 12A (cardiomyopathic type), autosomal dominant, Sengers syndrome, autosomal dominant progressive external ophthalmoplegia, Fontaine progeroid syndrome, mitochondrial disease, Leigh syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal dominant progressive external ophthalmoplegia, familial hypertrophic cardiomyopathy, Fontaine progeroid syndrome, hypertrophic cardiomyopathy, inborn mitochondrial myopathy, mitochondrial disease, mitochondrial DNA depletion syndrome 12A (cardiomyopathic type), autosomal dominant, mitochondrial DNA depletion syndrome 12B (cardiomyopathic type), autosomal recessive, myopia, progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 2, restrictive cardiomyopathy, Sengers syndrome