SLC28A2-AS1

Summary

SLC28A2-AS1 (SLC28A2 antisense RNA 1, HGNC:55417) is a long non-coding RNA gene on chromosome 15q21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55417
Approved symbol	SLC28A2-AS1
Name	SLC28A2 antisense RNA 1
Location	15q21.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC051619.4
Ensembl gene	ENSG00000259520
Ensembl biotype	lncRNA
Entrez	101928414
RNAcentral	URS00007599B1 — lncRNA, 672 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000559003, ENST00000560344, ENST00000561404, ENST00000663463, ENST00000758520, ENST00000758521, ENST00000758522, ENST00000758523, ENST00000758524, ENST00000758525, ENST00000758526

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000559003 — 4 exons

Exon	Start	End
ENSE00002537800	45255952	45256002
ENSE00002539317	45251580	45252072
ENSE00002543637	45255330	45255367
ENSE00002574941	45253781	45253934

Expression profiles

Bgee: expression breadth ubiquitous, 133 present calls, max score 84.05.

FANTOM5 (CAGE): breadth broad, TPM avg 1.0061 / max 32.5324, expressed in 438 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
149692	1.0061	438

Top tissues by expression

135 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cerebellar vermis	UBERON:0004720	84.05	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.52	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	80.28	gold quality
thymus	UBERON:0002370	78.77	silver quality
quadriceps femoris	UBERON:0001377	75.16	gold quality
corpus callosum	UBERON:0002336	74.21	gold quality
duodenum	UBERON:0002114	68.25	gold quality
adenohypophysis	UBERON:0002196	66.80	gold quality
heart left ventricle	UBERON:0002084	66.59	gold quality
calcaneal tendon	UBERON:0003701	66.36	gold quality
pituitary gland	UBERON:0000007	66.13	gold quality
islet of Langerhans	UBERON:0000006	66.09	gold quality
substantia nigra	UBERON:0002038	66.02	gold quality
spinal cord	UBERON:0002240	65.86	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	65.81	gold quality
putamen	UBERON:0001874	65.75	gold quality
colonic epithelium	UBERON:0000397	65.57	silver quality
nucleus accumbens	UBERON:0001882	65.49	gold quality
metanephros cortex	UBERON:0010533	65.19	gold quality
muscle tissue	UBERON:0002385	65.18	gold quality
amygdala	UBERON:0001876	65.10	gold quality
right atrium auricular region	UBERON:0006631	65.04	gold quality
heart	UBERON:0000948	64.96	gold quality
sural nerve	UBERON:0015488	64.94	gold quality
pancreas	UBERON:0001264	64.93	gold quality
body of pancreas	UBERON:0001150	64.40	gold quality
caudate nucleus	UBERON:0001873	64.31	gold quality
anterior cingulate cortex	UBERON:0009835	64.03	gold quality
ventricular zone	UBERON:0003053	63.98	gold quality
bone marrow cell	CL:0002092	63.96	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.88

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.