SLC28A3-AS1

Summary

SLC28A3-AS1 (SLC28A3 regulatory antisense RNA 1, HGNC:55460) is a long non-coding RNA gene on chromosome 9q21.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55460
Approved symbol	SLC28A3-AS1
Name	SLC28A3 regulatory antisense RNA 1
Location	9q21.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233262
Ensembl biotype	lncRNA
Entrez	105376116
RNAcentral	URS000060883B — lncRNA, 373 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000419815

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419815 — 2 exons

Exon	Start	End
ENSE00001626566	84289940	84290131
ENSE00001798861	84278219	84278399

Expression profiles

Bgee: expression breadth broad, 84 present calls, max score 91.83.

Top tissues by expression

84 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.83	gold quality
liver	UBERON:0002107	69.44	gold quality
gall bladder	UBERON:0002110	60.32	gold quality
islet of Langerhans	UBERON:0000006	60.07	gold quality
bone marrow	UBERON:0002371	58.53	gold quality
prefrontal cortex	UBERON:0000451	58.25	gold quality
vermiform appendix	UBERON:0001154	57.75	gold quality
superior frontal gyrus	UBERON:0002661	57.60	gold quality
minor salivary gland	UBERON:0001830	56.79	gold quality
calcaneal tendon	UBERON:0003701	56.59	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	56.26	gold quality
left testis	UBERON:0004533	55.67	gold quality
testis	UBERON:0000473	55.35	gold quality
body of pancreas	UBERON:0001150	54.97	gold quality
endometrium	UBERON:0001295	54.68	gold quality
blood	UBERON:0000178	54.47	gold quality
right testis	UBERON:0004534	54.21	gold quality
muscle of leg	UBERON:0001383	53.78	gold quality
fundus of stomach	UBERON:0001160	53.11	gold quality
right uterine tube	UBERON:0001302	52.91	gold quality
gastrocnemius	UBERON:0001388	52.44	gold quality
tibial artery	UBERON:0007610	51.90	gold quality
omental fat pad	UBERON:0010414	51.71	gold quality
zone of skin	UBERON:0000014	51.37	gold quality
skin of abdomen	UBERON:0001416	51.33	gold quality
skin of leg	UBERON:0001511	51.18	gold quality
esophagus mucosa	UBERON:0002469	51.04	gold quality
thoracic mammary gland	UBERON:0005200	50.76	gold quality
esophagus	UBERON:0001043	50.63	gold quality
rectum	UBERON:0001052	50.51	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.98

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.