SLC2A9-AS3

Summary

SLC2A9-AS3 (SLC2A9 antisense RNA 3, HGNC:59109) is a long non-coding RNA gene on chromosome 4p16.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:59109
Approved symbol	SLC2A9-AS3
Name	SLC2A9 antisense RNA 3
Location	4p16.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250413
Ensembl biotype	lncRNA
Entrez	124900664

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000503493, ENST00000733256, ENST00000733257, ENST00000733258, ENST00000733259, ENST00000733260, ENST00000733261, ENST00000733262, ENST00000733263, ENST00000733264, ENST00000733265, ENST00000733266, ENST00000733267, ENST00000733268

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000503493 — 2 exons

Exon	Start	End
ENSE00002029241	10009478	10009725
ENSE00002071927	10006482	10006692

Expression profiles

Bgee: expression breadth ubiquitous, 118 present calls, max score 81.27.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1820 / max 37.0350, expressed in 73 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
46910	0.1820	73

Top tissues by expression

118 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	81.27	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.17	silver quality
right uterine tube	UBERON:0001302	76.53	gold quality
endometrium	UBERON:0001295	71.08	gold quality
hindlimb stylopod muscle	UBERON:0004252	66.98	gold quality
rectum	UBERON:0001052	66.06	gold quality
mucosa of transverse colon	UBERON:0004991	65.70	gold quality
lymph node	UBERON:0000029	65.55	gold quality
right lung	UBERON:0002167	63.72	gold quality
fallopian tube	UBERON:0003889	62.95	gold quality
duodenum	UBERON:0002114	62.52	gold quality
gall bladder	UBERON:0002110	62.22	gold quality
liver	UBERON:0002107	62.13	gold quality
calcaneal tendon	UBERON:0003701	61.39	gold quality
tonsil	UBERON:0002372	60.98	gold quality
cortex of kidney	UBERON:0001225	60.74	gold quality
adult mammalian kidney	UBERON:0000082	60.72	gold quality
metanephros cortex	UBERON:0010533	60.69	gold quality
thyroid gland	UBERON:0002046	60.50	gold quality
left lobe of thyroid gland	UBERON:0001120	60.43	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	60.20	gold quality
prefrontal cortex	UBERON:0000451	60.06	gold quality
kidney	UBERON:0002113	59.83	gold quality
vermiform appendix	UBERON:0001154	59.03	gold quality
saliva-secreting gland	UBERON:0001044	58.85	gold quality
right lobe of thyroid gland	UBERON:0001119	58.65	gold quality
leukocyte	CL:0000738	58.26	gold quality
monocyte	CL:0000576	58.16	gold quality
prostate gland	UBERON:0002367	58.03	gold quality
minor salivary gland	UBERON:0001830	58.00	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	15.91

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.