SLC30A4-AS1

Summary

SLC30A4-AS1 (SLC30A4 antisense RNA 1, HGNC:56661) is a long non-coding RNA gene on chromosome 15q21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56661
Approved symbol	SLC30A4-AS1
Name	SLC30A4 antisense RNA 1
Location	15q21.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	hLinfRNA4, RP11-519G16.3
Ensembl gene	ENSG00000259354
Ensembl biotype	lncRNA
Entrez	105376714
RNAcentral	URS00003F9E65 — lncRNA, 2399 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000559869, ENST00000559960, ENST00000560077, ENST00000560647, ENST00000753133, ENST00000753134, ENST00000753260, ENST00000753261, ENST00000850627

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000559869 — 2 exons

Exon	Start	End
ENSE00002543658	45448427	45448801
ENSE00002569367	45461279	45461390

Expression profiles

Bgee: expression breadth ubiquitous, 128 present calls, max score 83.78.

Top tissues by expression

128 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	83.78	gold quality
sural nerve	UBERON:0015488	79.60	gold quality
mucosa of transverse colon	UBERON:0004991	78.64	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.60	gold quality
rectum	UBERON:0001052	77.60	gold quality
bone marrow	UBERON:0002371	77.07	gold quality
bone marrow cell	CL:0002092	72.72	silver quality
transverse colon	UBERON:0001157	71.76	gold quality
islet of Langerhans	UBERON:0000006	67.50	gold quality
duodenum	UBERON:0002114	65.65	gold quality
cortical plate	UBERON:0005343	65.42	gold quality
stomach	UBERON:0000945	64.04	gold quality
vermiform appendix	UBERON:0001154	63.59	gold quality
colon	UBERON:0001155	63.45	gold quality
body of stomach	UBERON:0001161	63.44	gold quality
placenta	UBERON:0001987	63.38	gold quality
intestine	UBERON:0000160	62.87	gold quality
gall bladder	UBERON:0002110	62.46	gold quality
lower esophagus mucosa	UBERON:0035834	61.01	gold quality
small intestine	UBERON:0002108	60.99	gold quality
ganglionic eminence	UBERON:0004023	60.94	gold quality
small intestine Peyer’s patch	UBERON:0003454	60.15	gold quality
monocyte	CL:0000576	59.91	gold quality
pancreas	UBERON:0001264	59.73	gold quality
stromal cell of endometrium	CL:0002255	59.64	gold quality
tonsil	UBERON:0002372	59.39	gold quality
testis	UBERON:0000473	59.10	gold quality
lung	UBERON:0002048	59.01	gold quality
upper lobe of left lung	UBERON:0008952	58.99	gold quality
left testis	UBERON:0004533	57.90	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.67

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.