SLC30A6-DT

Summary

SLC30A6-DT (SLC30A6 divergent transcript, HGNC:55203) is a long non-coding RNA gene on chromosome 2p22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55203
Approved symbol	SLC30A6-DT
Name	SLC30A6 divergent transcript
Location	2p22.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000272716
Ensembl biotype	lncRNA
Entrez	118568811
RNAcentral	URS00026A22BC — lncRNA, 699 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000608489

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000608489 — 1 exons

Exon	Start	End
ENSE00004133797	32165035	32165760

Expression profiles

Bgee: expression breadth ubiquitous, 129 present calls, max score 80.85.

FANTOM5 (CAGE): breadth broad, TPM avg 0.9281 / max 39.8420, expressed in 521 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
27705	0.9281	521

Top tissues by expression

129 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.85	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.62	gold quality
bone marrow cell	CL:0002092	74.67	gold quality
bone marrow	UBERON:0002371	71.34	gold quality
cortical plate	UBERON:0005343	65.29	gold quality
ventricular zone	UBERON:0003053	64.88	gold quality
gastrocnemius	UBERON:0001388	63.28	gold quality
muscle of leg	UBERON:0001383	62.93	gold quality
apex of heart	UBERON:0002098	62.33	gold quality
lower esophagus mucosa	UBERON:0035834	61.95	gold quality
islet of Langerhans	UBERON:0000006	61.70	gold quality
lymph node	UBERON:0000029	61.27	gold quality
tonsil	UBERON:0002372	60.94	gold quality
ganglionic eminence	UBERON:0004023	60.78	gold quality
leukocyte	CL:0000738	60.73	gold quality
monocyte	CL:0000576	60.62	gold quality
sural nerve	UBERON:0015488	60.18	silver quality
skeletal muscle tissue	UBERON:0001134	59.71	gold quality
mucosa of transverse colon	UBERON:0004991	59.46	gold quality
right uterine tube	UBERON:0001302	58.84	gold quality
blood	UBERON:0000178	58.75	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	58.33	gold quality
right coronary artery	UBERON:0001625	58.13	gold quality
hindlimb stylopod muscle	UBERON:0004252	58.07	gold quality
metanephros cortex	UBERON:0010533	57.74	gold quality
thyroid gland	UBERON:0002046	57.03	gold quality
urinary bladder	UBERON:0001255	56.72	gold quality
right lobe of thyroid gland	UBERON:0001119	56.67	gold quality
left lobe of thyroid gland	UBERON:0001120	56.64	gold quality
spleen	UBERON:0002106	56.55	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.51

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.