SLC35F2
gene geneOn this page
Also known as FLJ13018
Summary
SLC35F2 (solute carrier family 35 member F2, HGNC:23615) is a protein-coding gene on chromosome 11q22.3, encoding Queuine/queuosine transporter SLC35F2 (Q8IXU6). High affinity plasma membrane importer of the nucleobase queuine (q) and its nucleoside queuosine (Q), two bacterially derived micronutrients acquired from the gut microbiome and diet.
Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane.
Source: NCBI Gene 54733 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 57 total
- MANE Select transcript:
NM_017515
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:23615 |
| Approved symbol | SLC35F2 |
| Name | solute carrier family 35 member F2 |
| Location | 11q22.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ13018 |
| Ensembl gene | ENSG00000110660 |
| Ensembl biotype | protein_coding |
| OMIM | 620350 |
| Entrez | 54733 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 7 protein_coding, 3 nonsense_mediated_decay
ENST00000375682, ENST00000524991, ENST00000525071, ENST00000525815, ENST00000532513, ENST00000533664, ENST00000869080, ENST00000869081, ENST00000914205, ENST00000956832
RefSeq mRNA: 1 — MANE Select: NM_017515
NM_017515
CCDS: CCDS41709
Canonical transcript exons
ENST00000525815 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002181537 | 107790991 | 107792800 |
| ENSE00002181976 | 107858658 | 107858787 |
| ENSE00003485349 | 107806717 | 107806876 |
| ENSE00003491486 | 107805359 | 107805515 |
| ENSE00003575261 | 107811667 | 107811794 |
| ENSE00003588068 | 107803001 | 107803155 |
| ENSE00003592967 | 107815790 | 107815965 |
| ENSE00003638178 | 107804718 | 107804770 |
Expression profiles
Bgee: expression breadth ubiquitous, 225 present calls, max score 92.45.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 17.2917 / max 433.7576, expressed in 1730 samples.
FANTOM5 promoters (9 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 122131 | 9.1481 | 1627 |
| 122129 | 3.8820 | 1194 |
| 122136 | 1.9484 | 851 |
| 122132 | 1.2474 | 802 |
| 122133 | 0.6110 | 335 |
| 122130 | 0.2112 | 99 |
| 122134 | 0.1152 | 28 |
| 122137 | 0.1012 | 31 |
| 122135 | 0.0272 | 6 |
Top tissues by expression
275 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cortical plate | UBERON:0005343 | 92.45 | gold quality |
| parotid gland | UBERON:0001831 | 91.86 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 88.74 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 88.08 | gold quality |
| rectum | UBERON:0001052 | 88.04 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 86.93 | gold quality |
| skin of leg | UBERON:0001511 | 86.66 | gold quality |
| ileal mucosa | UBERON:0000331 | 86.63 | gold quality |
| skin of abdomen | UBERON:0001416 | 86.07 | gold quality |
| zone of skin | UBERON:0000014 | 85.19 | gold quality |
| gingival epithelium | UBERON:0001949 | 85.18 | gold quality |
| tonsil | UBERON:0002372 | 84.22 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 83.64 | gold quality |
| gingiva | UBERON:0001828 | 82.77 | gold quality |
| esophagus mucosa | UBERON:0002469 | 82.75 | gold quality |
| duodenum | UBERON:0002114 | 82.46 | gold quality |
| prostate gland | UBERON:0002367 | 81.99 | gold quality |
| colonic mucosa | UBERON:0000317 | 81.96 | gold quality |
| oviduct epithelium | UBERON:0004804 | 81.24 | gold quality |
| transverse colon | UBERON:0001157 | 80.97 | gold quality |
| jejunal mucosa | UBERON:0000399 | 80.95 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 80.84 | gold quality |
| vagina | UBERON:0000996 | 80.71 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 80.64 | gold quality |
| ectocervix | UBERON:0012249 | 80.52 | gold quality |
| fallopian tube | UBERON:0003889 | 79.66 | gold quality |
| colonic epithelium | UBERON:0000397 | 79.65 | gold quality |
| thoracic aorta | UBERON:0001515 | 79.44 | gold quality |
| endocervix | UBERON:0000458 | 79.43 | gold quality |
| ascending aorta | UBERON:0001496 | 79.41 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 11.17 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
57 targeting SLC35F2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-3185 | 99.99 | 68.12 | 1959 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-8082 | 99.95 | 67.27 | 1170 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-8087 | 99.90 | 69.55 | 1351 |
| HSA-MIR-627-3P | 99.90 | 71.42 | 3316 |
| HSA-MIR-3140-3P | 99.88 | 68.47 | 2069 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-MIR-5003-3P | 99.85 | 69.29 | 2517 |
| HSA-MIR-6844 | 99.82 | 70.69 | 2423 |
| HSA-MIR-4307 | 99.82 | 70.45 | 3374 |
| HSA-MIR-3934-3P | 99.76 | 65.51 | 1351 |
| HSA-MIR-2681-5P | 99.75 | 67.64 | 1655 |
| HSA-MIR-4766-5P | 99.75 | 69.23 | 2662 |
| HSA-MIR-6764-5P | 99.75 | 67.89 | 2304 |
| HSA-MIR-92A-2-5P | 99.75 | 67.01 | 2164 |
| HSA-MIR-425-5P | 99.59 | 67.67 | 900 |
| HSA-MIR-1915-3P | 99.58 | 66.79 | 1988 |
| HSA-MIR-582-5P | 99.47 | 70.79 | 2635 |
| HSA-MIR-578 | 99.46 | 68.36 | 1787 |
Literature-anchored findings (GeneRIF, showing 6)
- SLC35F2 was highly expressed in NSCLC tissues and the levels of expression, in particular the levels of the SLC35F2 transcript, were associated with NSCLC pathological staging. (PMID:21874247)
- Study showed that SLC35F2 was prominently upregulated in papillary thyroid carcinoma (PTC) tissues at both protein and mRNA expression level and significantly associated with lymph node metastasis. These findings suggest that SLC35F2 exerts its oncogenic effect on PTC progression through the mitogen-activated protein kinase pathway, with dependence on activation of TGFBR-1 and apoptosis signal-regulating kinase 1. (PMID:29274137)
- SLC35F2, a Transporter Sporadically Mutated in the Untranslated Region, Promotes Growth, Migration, and Invasion of Bladder Cancer Cells. (PMID:33418944)
- USP32 confers cancer cell resistance to YM155 via promoting ER-associated degradation of solute carrier protein SLC35F2. (PMID:34815782)
- SLC35F2-SYVN1-TRIM59 axis critically regulates ferroptosis of pancreatic cancer cells by inhibiting endogenous p53. (PMID:37740007)
- betaTrCP1 promotes SLC35F2 protein ubiquitination and inhibits cancer progression in HeLa cells. (PMID:37801987)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | slc35f2 | ENSDARG00000069745 |
| danio_rerio | slc35f2l | ENSDARG00000090686 |
| mus_musculus | Slc35f2 | ENSMUSG00000042195 |
| rattus_norvegicus | Slc35f2 | ENSRNOG00000009014 |
| caenorhabditis_elegans | Y73E7A.3 | WBGENE00022270 |
Paralogs (1): SLC35F1 (ENSG00000196376)
Protein
Protein identifiers
Queuine/queuosine transporter SLC35F2 — Q8IXU6 (reviewed: Q8IXU6)
Alternative names: Solute carrier family 35 member F2
All UniProt accessions (4): Q8IXU6, E9PJD1, E9PKZ2, E9PRY2
UniProt curated annotations — full annotation on UniProt →
Function. High affinity plasma membrane importer of the nucleobase queuine (q) and its nucleoside queuosine (Q), two bacterially derived micronutrients acquired from the gut microbiome and diet. Following cellular uptake, queuosine is incorporated at the wobble base (position 34) of tRNAs that decode histidine, tyrosine, aspartate, and asparagine codons, which is important for efficient translation.
Subcellular location. Cell membrane. Golgi apparatus membrane.
Similarity. Belongs to the SLC35F solute transporter family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8IXU6-1 | 1 | yes |
| Q8IXU6-2 | 2 | |
| Q8IXU6-3 | 3 |
RefSeq proteins (1): NP_059985* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR009262 | SLC35_F1/F2/F6 | Family |
| IPR037185 | EmrE-like | Homologous_superfamily |
| IPR052221 | SLC35F_Transporter | Family |
Pfam: PF06027
Catalyzed reactions (Rhea), 2 shown:
- queuine(out) = queuine(in) (RHEA:85679)
- queuosine(out) = queuosine(in) (RHEA:85683)
UniProt features (32 total): topological domain 11, transmembrane region 10, modified residue 4, splice variant 3, sequence conflict 3, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8IXU6-F1 | 82.97 | 0.54 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (4): 1, 5, 25, 371
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 133 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_COLON_TUMORAL_MACROPHAGE_UP, MYOGENIN_Q6, chr11q22, GOBP_TRNA_METABOLIC_PROCESS, ACEVEDO_LIVER_CANCER_WITH_H3K27ME3_UP, GOBP_RNA_MODIFICATION, BLALOCK_ALZHEIMERS_DISEASE_UP, DODD_NASOPHARYNGEAL_CARCINOMA_UP, LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN, RIGGI_EWING_SARCOMA_PROGENITOR_UP, GOBP_TRANSMEMBRANE_TRANSPORT, GOBP_TRNA_PROCESSING, GOBP_TRNA_MODIFICATION, NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_UP, ZHAN_MULTIPLE_MYELOMA_MS_DN
GO Biological Process (4): tRNA queuosine(34) biosynthetic process from salvaged queuosine or its precursors (GO:0160254), tRNA queuosine(34) biosynthetic process from salvaged queuine (GO:0160255), biological_process (GO:0008150), transmembrane transport (GO:0055085)
GO Molecular Function (2): transmembrane transporter activity (GO:0022857), molecular_function (GO:0003674)
GO Cellular Component (3): plasma membrane (GO:0005886), cellular_component (GO:0005575), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| tRNA queuosine(34) biosynthetic process | 2 |
| transport | 1 |
| cellular process | 1 |
| transporter activity | 1 |
| transmembrane transport | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
710 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SLC35F2 | DOP1B | Q9Y3R5 | 645 |
| SLC35F2 | CSMD1 | Q96PZ7 | 616 |
| SLC35F2 | IMMP2L | Q96T52 | 598 |
| SLC35F2 | HNRNPCL1 | O60812 | 583 |
| SLC35F2 | CHRFAM7A | Q494W8 | 574 |
| SLC35F2 | ELMOD1 | Q8N336 | 540 |
| SLC35F2 | NRXN1 | Q9ULB1 | 494 |
| SLC35F2 | RELN | P78509 | 490 |
| SLC35F2 | ERBB4 | Q15303 | 461 |
| SLC35F2 | SLC35F3 | Q8IY50 | 459 |
| SLC35F2 | RAB39A | Q14964 | 457 |
| SLC35F2 | POGLUT3 | Q7Z4H8 | 446 |
| SLC35F2 | SLC35D3 | Q5M8T2 | 432 |
| SLC35F2 | BCAR3 | O75815 | 423 |
| SLC35F2 | FNBP1L | Q5T0N5 | 415 |
IntAct
47 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CTBP1 | ZEB2 | psi-mi:“MI:0914”(association) | 0.800 |
| RETREG3 | PLSCR1 | psi-mi:“MI:0914”(association) | 0.640 |
| POMK | LRP5 | psi-mi:“MI:0914”(association) | 0.640 |
| POMK | TMEM120B | psi-mi:“MI:0914”(association) | 0.530 |
| C3AR1 | TMEM120B | psi-mi:“MI:0914”(association) | 0.530 |
| HTR2C | KLRG2 | psi-mi:“MI:0914”(association) | 0.530 |
| VSIG1 | TNPO2 | psi-mi:“MI:0914”(association) | 0.530 |
| ATP5PF | SLC19A2 | psi-mi:“MI:0914”(association) | 0.530 |
| ATP5F1B | SCAMP2 | psi-mi:“MI:0914”(association) | 0.530 |
| NBAS | psi-mi:“MI:0914”(association) | 0.350 | |
| CTBP2 | ZEB2 | psi-mi:“MI:0914”(association) | 0.350 |
| HDAC2 | psi-mi:“MI:0914”(association) | 0.350 | |
| RAB11A | SCAMP1 | psi-mi:“MI:0914”(association) | 0.350 |
| RAB11B | SCAMP1 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC35F2 | STX7 | psi-mi:“MI:0914”(association) | 0.350 |
| TTYH1 | TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
| TSPAN15 | TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
| BSCL2 | TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
| CMTM5 | TMEM120B | psi-mi:“MI:0914”(association) | 0.350 |
| TSPAN31 | TMEM120B | psi-mi:“MI:0914”(association) | 0.350 |
| TNFRSF10C | SLC22A23 | psi-mi:“MI:0914”(association) | 0.350 |
| C5AR1 | TCAF2 | psi-mi:“MI:0914”(association) | 0.350 |
| GPR182 | METTL15 | psi-mi:“MI:0914”(association) | 0.350 |
| OPRL1 | METTL15 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC22A4 | RTL8C | psi-mi:“MI:0914”(association) | 0.350 |
| VIPR2 | RABGAP1L | psi-mi:“MI:0914”(association) | 0.350 |
| FPR2 | GPR89A | psi-mi:“MI:0914”(association) | 0.350 |
| KDSR | ACOT7 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC35F2 | STXBP3 | psi-mi:“MI:0914”(association) | 0.350 |
| KLRC2 | CLGN | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (235): SLC35F2 (Affinity Capture-MS), SLC35F2 (Affinity Capture-MS), SLC35F2 (Proximity Label-MS), SLC35F2 (Affinity Capture-MS), SLC35F2 (Affinity Capture-MS), SLC35F2 (Affinity Capture-MS), SLC35F2 (Affinity Capture-MS), SLC35F2 (Affinity Capture-MS), SLC35F2 (Affinity Capture-MS), SLC35F2 (Affinity Capture-MS), SLC35F2 (Affinity Capture-MS), SLC35F2 (Affinity Capture-MS), SLC35F2 (Affinity Capture-MS), SLC35F2 (Affinity Capture-RNA), SLC35F2 (Affinity Capture-RNA)
ESM2 similar proteins: A0NGI1, A7YW81, O74750, O94654, P40004, Q00974, Q02334, Q03730, Q04083, Q09875, Q0D2K0, Q0V9U2, Q10000, Q29Q28, Q3E6T0, Q3SWX0, Q54V96, Q54ZG7, Q550W6, Q55FV8, Q5R7Q3, Q5T1Q4, Q6CR04, Q6FSF8, Q7RTP0, Q7TML3, Q8BGK5, Q8BHK1, Q8BLX4, Q8BMW7, Q8BZF2, Q8IXU6, Q8MXJ9, Q8N8Q9, Q8R1E7, Q8WY98, Q94EI9, Q968A5, Q9C8M1, Q9JJC8
Diamond homologs: O59785, Q0V9U2, Q5T1Q4, Q7TML3, Q8BGK5, Q8IXU6, Q550A6
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 66 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway | 5 | 17.9× | 4e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
57 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 39 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1373 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:107802996:TTTA:T | donor_loss | 1.0000 |
| 11:107802997:TTA:T | donor_loss | 1.0000 |
| 11:107802998:TAC:T | donor_loss | 1.0000 |
| 11:107802999:A:AG | donor_loss | 1.0000 |
| 11:107803000:C:CA | donor_loss | 1.0000 |
| 11:107803151:CAGGG:C | acceptor_gain | 1.0000 |
| 11:107803153:GGG:G | acceptor_gain | 1.0000 |
| 11:107803154:GG:G | acceptor_gain | 1.0000 |
| 11:107803154:GGCTG:G | acceptor_loss | 1.0000 |
| 11:107803156:C:A | acceptor_loss | 1.0000 |
| 11:107803156:C:CC | acceptor_gain | 1.0000 |
| 11:107803157:T:C | acceptor_loss | 1.0000 |
| 11:107803158:G:C | acceptor_gain | 1.0000 |
| 11:107803158:G:GC | acceptor_gain | 1.0000 |
| 11:107805357:A:AC | donor_gain | 1.0000 |
| 11:107805358:C:CC | donor_gain | 1.0000 |
| 11:107805358:CAG:C | donor_gain | 1.0000 |
| 11:107805368:C:CT | donor_gain | 1.0000 |
| 11:107805400:T:TA | donor_gain | 1.0000 |
| 11:107805423:G:C | donor_gain | 1.0000 |
| 11:107806713:TCA:T | donor_loss | 1.0000 |
| 11:107806714:CACC:C | donor_loss | 1.0000 |
| 11:107806715:ACC:A | donor_loss | 1.0000 |
| 11:107806716:C:T | donor_loss | 1.0000 |
| 11:107806873:AAAG:A | acceptor_gain | 1.0000 |
| 11:107806874:AAG:A | acceptor_gain | 1.0000 |
| 11:107806875:AG:A | acceptor_gain | 1.0000 |
| 11:107806875:AGC:A | acceptor_loss | 1.0000 |
| 11:107806876:GC:G | acceptor_loss | 1.0000 |
| 11:107806877:C:CA | acceptor_loss | 1.0000 |
AlphaMissense
2425 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:107792757:C:T | G328E | 0.998 |
| 11:107792758:C:G | G328R | 0.998 |
| 11:107792758:C:T | G328R | 0.998 |
| 11:107806771:C:G | G174R | 0.998 |
| 11:107806778:A:C | C171W | 0.998 |
| 11:107806780:A:G | C171R | 0.998 |
| 11:107806875:A:G | L139P | 0.998 |
| 11:107803034:G:C | S302R | 0.997 |
| 11:107803034:G:T | S302R | 0.997 |
| 11:107803036:T:G | S302R | 0.997 |
| 11:107803048:C:G | A298P | 0.997 |
| 11:107803053:A:G | L296P | 0.997 |
| 11:107803062:A:G | L293P | 0.997 |
| 11:107805370:A:C | S240R | 0.997 |
| 11:107805370:A:T | S240R | 0.997 |
| 11:107805372:T:G | S240R | 0.997 |
| 11:107805393:C:G | G233R | 0.997 |
| 11:107805497:C:T | G198D | 0.997 |
| 11:107805498:C:A | G198C | 0.997 |
| 11:107805498:C:G | G198R | 0.997 |
| 11:107806770:C:T | G174D | 0.997 |
| 11:107806779:C:T | C171Y | 0.997 |
| 11:107806875:A:T | L139H | 0.997 |
| 11:107815848:G:C | S76R | 0.997 |
| 11:107815848:G:T | S76R | 0.997 |
| 11:107815850:T:G | S76R | 0.997 |
| 11:107815896:G:C | S60R | 0.997 |
| 11:107815896:G:T | S60R | 0.997 |
| 11:107815898:T:G | S60R | 0.997 |
| 11:107792758:C:A | G328W | 0.996 |
dbSNP variants (sampled 300 via entrez): RS1000052974 (11:107829030 C>A), RS1000085090 (11:107829371 A>G), RS1000105795 (11:107806467 T>A), RS1000117818 (11:107859811 C>A,G,T), RS1000147972 (11:107847585 T>C), RS1000171475 (11:107820782 C>A), RS1000196337 (11:107841166 T>A), RS1000226038 (11:107841344 C>A), RS1000311688 (11:107853734 A>G), RS1000327366 (11:107807015 G>A,C), RS1000390221 (11:107847109 G>A), RS1000415192 (11:107806192 T>C), RS1000459308 (11:107852913 C>A), RS1000473940 (11:107818650 T>A), RS1000488933 (11:107853199 T>C)
Disease associations
OMIM: gene MIM:620350 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001877_15 | Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined) | 4.000000e-06 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: transporter — SLC35 family of nucleotide sugar transporters
CTD chemical–gene interactions
47 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression, affects expression, affects cotreatment | 9 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| Tretinoin | decreases expression, increases expression | 3 |
| Cyclosporine | decreases expression, increases expression | 3 |
| sodium arsenite | decreases expression, affects cotreatment, increases abundance, increases expression | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Air Pollutants | decreases expression, increases abundance | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Smoke | decreases expression, increases abundance | 2 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| manganese chloride | affects cotreatment, increases abundance, increases expression | 1 |
| potassium chromate(VI) | increases expression | 1 |
| coumarin | decreases phosphorylation | 1 |
| deguelin | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| pyrimidifen | increases expression | 1 |
| ICG 001 | increases expression | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| bisphenol S | affects cotreatment, decreases expression | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Arsenic | affects cotreatment, increases abundance, increases expression | 1 |
| Benzo(a)pyrene | increases expression | 1 |
| Cadmium | decreases expression | 1 |
| Caffeine | affects phosphorylation | 1 |
| Cisplatin | affects cotreatment, decreases expression | 1 |
Cellosaurus cell lines
5 cell lines: 4 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B3HF | Abcam HEK293T SLC35F2 KO | Transformed cell line | Female |
| CVCL_D4D7 | HCT116-SLC35F2-KO-c2 | Cancer cell line | Male |
| CVCL_D4D8 | HCT116-SLC35F2-KO-c3 | Cancer cell line | Male |
| CVCL_TN27 | HAP1 SLC35F2 (-) 1 | Cancer cell line | Male |
| CVCL_TN28 | HAP1 SLC35F2 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.