SLC35F3-AS1

Summary

SLC35F3-AS1 (SLC35F3 antisense RNA 1, HGNC:41027) is a long non-coding RNA gene on chromosome 1q42.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41027
Approved symbol	SLC35F3-AS1
Name	SLC35F3 antisense RNA 1
Location	1q42.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236244
Ensembl biotype	lncRNA
Entrez	102724100
RNAcentral	URS00026A1B9C — lncRNA, 1845 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000446433

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000446433 — 2 exons

Exon	Start	End
ENSE00004132239	234272354	234273015
ENSE00004132240	234268580	234268823

Expression profiles

Bgee: expression breadth broad, 76 present calls, max score 80.56.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0193 / max 14.4347, expressed in 3 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
18027	0.0100	3
18028	0.0094	3

Top tissues by expression

76 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right testis	UBERON:0004534	80.56	gold quality
left testis	UBERON:0004533	80.52	gold quality
testis	UBERON:0000473	79.52	gold quality
stromal cell of endometrium	CL:0002255	64.87	gold quality
tonsil	UBERON:0002372	64.78	silver quality
islet of Langerhans	UBERON:0000006	59.03	gold quality
gastrocnemius	UBERON:0001388	58.82	gold quality
primary visual cortex	UBERON:0002436	57.81	gold quality
monocyte	CL:0000576	57.49	gold quality
corpus callosum	UBERON:0002336	56.88	gold quality
prefrontal cortex	UBERON:0000451	56.48	gold quality
cortex of kidney	UBERON:0001225	55.20	gold quality
blood	UBERON:0000178	54.76	gold quality
superior frontal gyrus	UBERON:0002661	54.65	gold quality
multicellular organism	UBERON:0000468	54.49	gold quality
calcaneal tendon	UBERON:0003701	53.44	gold quality
endometrium	UBERON:0001295	53.21	gold quality
tibial artery	UBERON:0007610	50.85	gold quality
body of pancreas	UBERON:0001150	50.79	gold quality
cerebellar cortex	UBERON:0002129	50.52	gold quality
right hemisphere of cerebellum	UBERON:0014890	50.44	gold quality
cerebellar hemisphere	UBERON:0002245	50.17	gold quality
kidney	UBERON:0002113	49.80	gold quality
heart left ventricle	UBERON:0002084	49.04	gold quality
ascending aorta	UBERON:0001496	48.43	gold quality
frontal cortex	UBERON:0001870	48.40	gold quality
substantia nigra	UBERON:0002038	48.25	gold quality
putamen	UBERON:0001874	47.57	gold quality
brain	UBERON:0000955	47.28	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	47.26	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.65

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.