SLC38A2-AS1

Summary

SLC38A2-AS1 (SLC38A2 antisense RNA 1, HGNC:55454) is a long non-coding RNA gene on chromosome 12q13.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55454
Approved symbol	SLC38A2-AS1
Name	SLC38A2 antisense RNA 1
Location	12q13.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258096
Ensembl biotype	lncRNA
Entrez	102723757
RNAcentral	URS000233C054 — lncRNA, 546 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000550319, ENST00000793291, ENST00000793292, ENST00000793293, ENST00000793294, ENST00000793295, ENST00000793296

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000550319 — 2 exons

Exon	Start	End
ENSE00004176033	46373313	46373780
ENSE00004176036	46371431	46371623

Expression profiles

Bgee: expression breadth ubiquitous, 139 present calls, max score 89.34.

Top tissues by expression

230 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.34	gold quality
sperm	CL:0000019	85.73	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.16	silver quality
buccal mucosa cell	CL:0002336	77.88	gold quality
superficial temporal artery	UBERON:0001614	76.43	gold quality
bone marrow cell	CL:0002092	69.48	silver quality
left testis	UBERON:0004533	67.87	gold quality
mucosa of paranasal sinus	UBERON:0005030	67.72	gold quality
testis	UBERON:0000473	65.65	gold quality
vena cava	UBERON:0004087	65.54	gold quality
myocardium	UBERON:0002349	65.26	gold quality
lateral globus pallidus	UBERON:0002476	64.78	gold quality
secondary oocyte	CL:0000655	64.76	gold quality
stromal cell of endometrium	CL:0002255	64.71	gold quality
granulocyte	CL:0000094	64.54	gold quality
right testis	UBERON:0004534	64.53	gold quality
substantia nigra pars reticulata	UBERON:0001966	64.27	gold quality
subthalamic nucleus	UBERON:0001906	63.99	gold quality
colonic epithelium	UBERON:0000397	63.78	silver quality
substantia nigra pars compacta	UBERON:0001965	63.55	gold quality
cerebellar vermis	UBERON:0004720	62.86	gold quality
gingival epithelium	UBERON:0001949	62.78	gold quality
lateral nuclear group of thalamus	UBERON:0002736	62.77	gold quality
epithelium of nasopharynx	UBERON:0001951	62.58	gold quality
dorsal plus ventral thalamus	UBERON:0001897	62.57	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	61.98	gold quality
inferior vagus X ganglion	UBERON:0005363	61.98	gold quality
ventral tegmental area	UBERON:0002691	61.68	gold quality
saphenous vein	UBERON:0007318	61.45	gold quality
superior vestibular nucleus	UBERON:0007227	61.28	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.93

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.