SLC38A4-AS1

Summary

SLC38A4-AS1 (SLC38A4 antisense RNA 1, HGNC:56178) is a long non-coding RNA gene on chromosome 12q13.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56178
Approved symbol	SLC38A4-AS1
Name	SLC38A4 antisense RNA 1
Location	12q13.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257261
Ensembl biotype	lncRNA
Entrez	100288798
RNAcentral	URS00007E3536 — lncRNA, 611 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 58 — 58 lncRNA

ENST00000551021, ENST00000551503, ENST00000607353, ENST00000611243, ENST00000653856, ENST00000657145, ENST00000663959, ENST00000666025, ENST00000666942, ENST00000667191, ENST00000687751, ENST00000717842, ENST00000734175, ENST00000734176, ENST00000734177, ENST00000734178, ENST00000734179, ENST00000734180, ENST00000734181, ENST00000734182, ENST00000734183, ENST00000734184, ENST00000734185, ENST00000734186, ENST00000734187, ENST00000734188, ENST00000734189, ENST00000734190, ENST00000734191, ENST00000734192, ENST00000734193, ENST00000734194, ENST00000734195, ENST00000734196, ENST00000734197, ENST00000734198, ENST00000734199, ENST00000734200, ENST00000734201, ENST00000734202, ENST00000734203, ENST00000734204, ENST00000734205, ENST00000734206, ENST00000734207, ENST00000734208, ENST00000734209, ENST00000734210, ENST00000734211, ENST00000734212, ENST00000734213, ENST00000821132, ENST00000821133, ENST00000821134, ENST00000821135, ENST00000821136, ENST00000821137, ENST00000821138

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000551021 — 4 exons

Exon	Start	End
ENSE00002360707	46387747	46387972
ENSE00003851415	46470153	46470262
ENSE00004066100	46383994	46384161
ENSE00004476061	46652390	46652577

Expression profiles

Bgee: expression breadth ubiquitous, 159 present calls, max score 91.73.

Top tissues by expression

242 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	91.73	gold quality
gastrocnemius	UBERON:0001388	90.59	gold quality
hindlimb stylopod muscle	UBERON:0004252	90.17	gold quality
muscle of leg	UBERON:0001383	90.15	gold quality
bone marrow cell	CL:0002092	87.40	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.42	gold quality
colonic epithelium	UBERON:0000397	83.77	gold quality
right lobe of liver	UBERON:0001114	82.11	gold quality
body of pancreas	UBERON:0001150	81.75	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	80.68	gold quality
right adrenal gland cortex	UBERON:0035827	80.58	gold quality
monocyte	CL:0000576	80.52	gold quality
adrenal tissue	UBERON:0018303	80.15	gold quality
leukocyte	CL:0000738	79.65	gold quality
calcaneal tendon	UBERON:0003701	79.45	gold quality
right uterine tube	UBERON:0001302	79.32	gold quality
pancreas	UBERON:0001264	79.29	gold quality
right lung	UBERON:0002167	78.76	gold quality
right adrenal gland	UBERON:0001233	78.16	gold quality
popliteal artery	UBERON:0002250	78.06	gold quality
tibial artery	UBERON:0007610	78.04	gold quality
islet of Langerhans	UBERON:0000006	77.08	gold quality
left adrenal gland cortex	UBERON:0035825	76.88	gold quality
cortex of kidney	UBERON:0001225	76.86	gold quality
adenohypophysis	UBERON:0002196	76.76	gold quality
left adrenal gland	UBERON:0001234	76.62	gold quality
metanephros cortex	UBERON:0010533	76.52	gold quality
adrenal cortex	UBERON:0001235	76.33	gold quality
adult mammalian kidney	UBERON:0000082	76.25	gold quality
pituitary gland	UBERON:0000007	75.74	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	12.21
E-HCAD-35	yes	7.72

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.