SLC39A13-AS1

Summary

SLC39A13-AS1 (SLC39A13 antisense RNA 1, HGNC:56351) is a long non-coding RNA gene on chromosome 11p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56351
Approved symbol	SLC39A13-AS1
Name	SLC39A13 antisense RNA 1
Location	11p11.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	lnc-SPI1U, LOUP, AC090559.1
Ensembl gene	ENSG00000255197
Ensembl biotype	lncRNA
Entrez	127138868
RNAcentral	URS0002617A83 — lncRNA, 2637 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000527426, ENST00000532340, ENST00000532943, ENST00000655367, ENST00000659838, ENST00000666926, ENST00000689628, ENST00000691591, ENST00000784711, ENST00000784712, ENST00000784713

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000527426 — 2 exons

Exon	Start	End
ENSE00002181430	47395490	47395640
ENSE00002184686	47383148	47383832

Expression profiles

Bgee: expression breadth ubiquitous, 133 present calls, max score 97.16.

Top tissues by expression

133 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
monocyte	CL:0000576	97.16	gold quality
leukocyte	CL:0000738	96.98	gold quality
blood	UBERON:0000178	95.51	gold quality
granulocyte	CL:0000094	93.98	gold quality
vermiform appendix	UBERON:0001154	88.28	gold quality
bone marrow	UBERON:0002371	87.11	gold quality
bone marrow cell	CL:0002092	84.98	gold quality
spleen	UBERON:0002106	83.57	gold quality
right lung	UBERON:0002167	78.42	gold quality
gall bladder	UBERON:0002110	77.78	gold quality
right coronary artery	UBERON:0001625	77.63	gold quality
smooth muscle tissue	UBERON:0001135	77.05	gold quality
upper lobe of left lung	UBERON:0008952	75.93	gold quality
placenta	UBERON:0001987	75.68	gold quality
lymph node	UBERON:0000029	75.56	gold quality
lung	UBERON:0002048	74.73	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	73.21	gold quality
sural nerve	UBERON:0015488	72.66	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	72.60	gold quality
subcutaneous adipose tissue	UBERON:0002190	72.34	gold quality
colonic epithelium	UBERON:0000397	71.86	silver quality
adipose tissue	UBERON:0001013	71.73	gold quality
omental fat pad	UBERON:0010414	70.88	gold quality
right adrenal gland cortex	UBERON:0035827	70.85	gold quality
descending thoracic aorta	UBERON:0002345	70.72	gold quality
tonsil	UBERON:0002372	70.56	gold quality
right adrenal gland	UBERON:0001233	70.15	gold quality
cerebellum	UBERON:0002037	70.05	gold quality
cerebellar cortex	UBERON:0002129	69.99	gold quality
muscle tissue	UBERON:0002385	69.99	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.94

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.