SLC41A3-AS1

Summary

SLC41A3-AS1 (SLC41A3 antisense RNA 1, HGNC:55559) is a long non-coding RNA gene on chromosome 3q21.2.

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55559
Approved symbol	SLC41A3-AS1
Name	SLC41A3 antisense RNA 1
Location	3q21.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250012
Entrez	112267887

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Bgee: expression breadth ubiquitous, 134 present calls, max score 81.37.

Top tissues by expression

137 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.37	gold quality
nucleus accumbens	UBERON:0001882	80.62	gold quality
hindlimb stylopod muscle	UBERON:0004252	79.44	gold quality
right lobe of liver	UBERON:0001114	79.38	gold quality
putamen	UBERON:0001874	78.84	gold quality
skeletal muscle tissue	UBERON:0001134	78.26	gold quality
caudate nucleus	UBERON:0001873	77.79	gold quality
muscle of leg	UBERON:0001383	77.52	gold quality
gastrocnemius	UBERON:0001388	77.42	gold quality
pituitary gland	UBERON:0000007	76.35	gold quality
amygdala	UBERON:0001876	76.29	gold quality
temporal lobe	UBERON:0001871	76.01	gold quality
adenohypophysis	UBERON:0002196	76.01	gold quality
liver	UBERON:0002107	76.00	gold quality
prefrontal cortex	UBERON:0000451	75.35	gold quality
anterior cingulate cortex	UBERON:0009835	75.30	gold quality
brain	UBERON:0000955	75.19	gold quality
muscle tissue	UBERON:0002385	75.06	gold quality
body of pancreas	UBERON:0001150	74.95	gold quality
substantia nigra	UBERON:0002038	74.95	gold quality
pancreas	UBERON:0001264	74.79	gold quality
hypothalamus	UBERON:0001898	74.72	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	74.72	gold quality
islet of Langerhans	UBERON:0000006	74.61	gold quality
frontal cortex	UBERON:0001870	74.30	gold quality
cerebral cortex	UBERON:0000956	74.29	gold quality
Brodmann (1909) area 9	UBERON:0013540	73.94	gold quality
primary visual cortex	UBERON:0002436	73.82	gold quality
right frontal lobe	UBERON:0002810	73.55	gold quality
Ammon’s horn	UBERON:0001954	73.46	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.78

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 0 (showing top):

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.