SLC46A2-AS1

Summary

SLC46A2-AS1 (SLC46A2 antisense RNA 1, HGNC:56364) is a long non-coding RNA gene on chromosome 9q32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56364
Approved symbol	SLC46A2-AS1
Name	SLC46A2 antisense RNA 1
Location	9q32
Locus type	RNA, long non-coding
Status	Approved
Aliases	AL139041.1
Ensembl gene	ENSG00000271631
Ensembl biotype	lncRNA
Entrez	127379751
RNAcentral	URS0000415A55 — lncRNA, 610 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000605480

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000605480 — 1 exons

Exon	Start	End
ENSE00003517175	112885158	112885767

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 85.00.

Top tissues by expression

125 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.00	gold quality
monocyte	CL:0000576	76.94	gold quality
leukocyte	CL:0000738	75.76	gold quality
mucosa of transverse colon	UBERON:0004991	72.51	gold quality
bone marrow cell	CL:0002092	71.25	gold quality
upper lobe of left lung	UBERON:0008952	67.43	gold quality
colonic epithelium	UBERON:0000397	65.72	silver quality
right lung	UBERON:0002167	65.25	gold quality
blood	UBERON:0000178	65.01	gold quality
lung	UBERON:0002048	64.96	gold quality
spleen	UBERON:0002106	64.38	gold quality
endometrium	UBERON:0001295	63.68	gold quality
skin of leg	UBERON:0001511	63.31	gold quality
bone marrow	UBERON:0002371	63.08	gold quality
zone of skin	UBERON:0000014	62.88	gold quality
lymph node	UBERON:0000029	62.84	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	62.59	gold quality
granulocyte	CL:0000094	62.33	gold quality
skin of abdomen	UBERON:0001416	62.23	gold quality
tibial nerve	UBERON:0001323	61.77	gold quality
hindlimb stylopod muscle	UBERON:0004252	61.37	gold quality
rectum	UBERON:0001052	61.00	gold quality
vermiform appendix	UBERON:0001154	60.88	gold quality
transverse colon	UBERON:0001157	60.80	gold quality
duodenum	UBERON:0002114	59.32	gold quality
muscle tissue	UBERON:0002385	59.32	gold quality
tonsil	UBERON:0002372	58.68	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	58.57	gold quality
subcutaneous adipose tissue	UBERON:0002190	58.28	gold quality
minor salivary gland	UBERON:0001830	57.77	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.61

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.