SLC60A2-DT

Summary

SLC60A2-DT (SLC60A2 divergent transcript, HGNC:55773) is a long non-coding RNA gene on chromosome 6q21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55773
Approved symbol	SLC60A2-DT
Name	SLC60A2 divergent transcript
Location	6q21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231046
Ensembl biotype	lncRNA
Entrez	107986521
RNAcentral	URS0002A4EFE6 — lncRNA, 818 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 18 — 18 lncRNA

ENST00000425364, ENST00000729544, ENST00000729545, ENST00000729546, ENST00000729547, ENST00000729548, ENST00000729549, ENST00000729550, ENST00000729551, ENST00000729552, ENST00000729553, ENST00000729554, ENST00000729555, ENST00000729556, ENST00000729557, ENST00000729558, ENST00000729559, ENST00000729560

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000425364 — 4 exons

Exon	Start	End
ENSE00001692905	111231481	111231546
ENSE00001749184	111233999	111234083
ENSE00004057222	111227738	111227923
ENSE00004057230	111258930	111259187

Expression profiles

Bgee: expression breadth broad, 82 present calls, max score 91.58.

Top tissues by expression

82 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.58	gold quality
left testis	UBERON:0004533	72.99	gold quality
testis	UBERON:0000473	72.32	gold quality
right testis	UBERON:0004534	71.39	gold quality
skeletal muscle tissue	UBERON:0001134	65.19	gold quality
cortex of kidney	UBERON:0001225	65.01	gold quality
bone marrow	UBERON:0002371	60.32	gold quality
prefrontal cortex	UBERON:0000451	59.29	gold quality
thoracic mammary gland	UBERON:0005200	58.28	gold quality
lymph node	UBERON:0000029	57.50	gold quality
monocyte	CL:0000576	57.37	gold quality
kidney	UBERON:0002113	55.92	gold quality
multicellular organism	UBERON:0000468	54.36	gold quality
muscle of leg	UBERON:0001383	53.69	gold quality
gastrocnemius	UBERON:0001388	53.55	gold quality
blood	UBERON:0000178	51.44	silver quality
tibial nerve	UBERON:0001323	50.13	gold quality
body of pancreas	UBERON:0001150	49.08	silver quality
frontal cortex	UBERON:0001870	48.96	gold quality
right lobe of liver	UBERON:0001114	48.70	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	48.22	gold quality
left adrenal gland cortex	UBERON:0035825	48.07	gold quality
ovary	UBERON:0000992	47.85	gold quality
small intestine	UBERON:0002108	47.41	gold quality
heart left ventricle	UBERON:0002084	47.32	gold quality
adrenal tissue	UBERON:0018303	47.04	silver quality
corpus callosum	UBERON:0002336	46.92	silver quality
descending thoracic aorta	UBERON:0002345	46.80	gold quality
thoracic aorta	UBERON:0001515	46.12	gold quality
body of stomach	UBERON:0001161	45.91	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.