SLC66A1
geneOn this page
Also known as FLJ20320LAAT-1LAAT1
Summary
SLC66A1 (solute carrier family 66 member 1, HGNC:26001) is a protein-coding gene on chromosome 1p36.13, encoding Lysosomal amino acid transporter 1 homolog (Q6ZP29). Amino acid transporter that specifically mediates the pH-dependent export of the cationic amino acids arginine, histidine and lysine from lysosomes.
Enables L-arginine transmembrane transporter activity; L-histidine transmembrane transporter activity; and L-lysine transmembrane transporter activity. Involved in L-amino acid transport and intracellular amino acid homeostasis. Located in lysosomal membrane.
Source: NCBI Gene 54896 — RefSeq curated summary.
At a glance
- Gene–disease (curated): retinitis pigmentosa (Strong, GenCC)
- GWAS associations: 3
- Clinical variants (ClinVar): 79 total — 1 pathogenic
- MANE Select transcript:
NM_001040125
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:26001 |
| Approved symbol | SLC66A1 |
| Name | solute carrier family 66 member 1 |
| Location | 1p36.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ20320, LAAT-1, LAAT1 |
| Ensembl gene | ENSG00000040487 |
| Ensembl biotype | protein_coding |
| OMIM | 614760 |
| Entrez | 54896 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 8 protein_coding, 2 nonsense_mediated_decay
ENST00000375153, ENST00000375155, ENST00000400548, ENST00000432465, ENST00000469076, ENST00000497827, ENST00000902231, ENST00000902232, ENST00000956590, ENST00000956591
RefSeq mRNA: 4 — MANE Select: NM_001040125
NM_001040125, NM_001040126, NM_001287531, NM_017765
CCDS: CCDS195, CCDS30618
Canonical transcript exons
ENST00000375153 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000754876 | 19325495 | 19325582 |
| ENSE00001465925 | 19312326 | 19312889 |
| ENSE00001889561 | 19328572 | 19329300 |
| ENSE00002267461 | 19317600 | 19317841 |
| ENSE00003489187 | 19326245 | 19326387 |
| ENSE00003490822 | 19324633 | 19324762 |
| ENSE00003576994 | 19326531 | 19326623 |
| ENSE00003625916 | 19327227 | 19327412 |
Expression profiles
Bgee: expression breadth ubiquitous, 172 present calls, max score 90.82.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 16.4860 / max 191.1711, expressed in 1807 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 1060 | 16.2390 | 1807 |
| 1061 | 0.2469 | 92 |
Top tissues by expression
234 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right hemisphere of cerebellum | UBERON:0014890 | 90.82 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 90.53 | gold quality |
| cerebellar cortex | UBERON:0002129 | 90.36 | gold quality |
| right adrenal gland | UBERON:0001233 | 89.41 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 88.90 | gold quality |
| adenohypophysis | UBERON:0002196 | 88.83 | gold quality |
| left adrenal gland | UBERON:0001234 | 88.82 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 88.74 | gold quality |
| cerebellum | UBERON:0002037 | 88.43 | gold quality |
| right lobe of liver | UBERON:0001114 | 88.27 | gold quality |
| adrenal cortex | UBERON:0001235 | 87.19 | gold quality |
| pituitary gland | UBERON:0000007 | 86.99 | gold quality |
| adrenal gland | UBERON:0002369 | 86.47 | gold quality |
| apex of heart | UBERON:0002098 | 86.39 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 86.02 | gold quality |
| body of stomach | UBERON:0001161 | 85.69 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 84.89 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 84.87 | gold quality |
| left testis | UBERON:0004533 | 84.85 | gold quality |
| metanephros cortex | UBERON:0010533 | 84.82 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 84.71 | gold quality |
| right testis | UBERON:0004534 | 84.67 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 84.62 | gold quality |
| body of pancreas | UBERON:0001150 | 84.48 | gold quality |
| right frontal lobe | UBERON:0002810 | 84.29 | gold quality |
| gastrocnemius | UBERON:0001388 | 84.27 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 83.93 | gold quality |
| granulocyte | CL:0000094 | 83.90 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 83.58 | gold quality |
| endocervix | UBERON:0000458 | 83.42 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.05 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
21 targeting SLC66A1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-LET-7A-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7B-5P | 99.98 | 72.31 | 1790 |
| HSA-LET-7C-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7E-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7F-5P | 99.98 | 72.56 | 1784 |
| HSA-LET-7G-5P | 99.98 | 72.37 | 1784 |
| HSA-LET-7I-5P | 99.98 | 72.37 | 1788 |
| HSA-MIR-98-5P | 99.98 | 72.33 | 1787 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-1976 | 99.74 | 65.48 | 1127 |
| HSA-MIR-6852-5P | 99.17 | 66.69 | 2073 |
| HSA-MIR-1910-3P | 98.44 | 67.51 | 1695 |
| HSA-MIR-6511A-5P | 98.13 | 67.47 | 1770 |
| HSA-MIR-6747-3P | 97.73 | 64.84 | 1596 |
| HSA-MIR-663B | 97.40 | 62.91 | 664 |
| HSA-MIR-101-2-5P | 95.96 | 68.62 | 55 |
| HSA-MIR-1238-3P | 95.27 | 62.25 | 552 |
| HSA-MIR-1231 | 95.10 | 65.63 | 663 |
| HSA-MIR-6879-3P | 93.93 | 64.00 | 759 |
Literature-anchored findings (GeneRIF, showing 3)
- PQLC2 and Ypq1-3 proteins are lysosomal/vacuolar exporters of CAAs and suggest that small-molecule transport is a conserved feature of the PQ-loop protein family (PMID:23169667)
- knockdown caused growth arrest and cell death of cancer cells and suppressed tumor growth in a mouse xenograft model. These results suggest that targeting PQLC2 is an effective strategy for GC treatment. (PMID:30729615)
- Receptor-like role for PQLC2 amino acid transporter in the lysosomal sensing of cationic amino acids. (PMID:33597295)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | slc66a1 | ENSDARG00000043624 |
| mus_musculus | Slc66a1 | ENSMUSG00000028744 |
| rattus_norvegicus | Slc66a1 | ENSRNOG00000017706 |
| caenorhabditis_elegans | WBGENE00021546 |
Paralogs (1): TMEM44 (ENSG00000145014)
Protein
Protein identifiers
Lysosomal amino acid transporter 1 homolog — Q6ZP29 (reviewed: Q6ZP29)
Alternative names: PQ-loop repeat-containing protein 2, Solute carrier family 66 member 1
All UniProt accessions (5): A0A024RAA1, A2A2E6, E9PJZ6, E9PL93, Q6ZP29
UniProt curated annotations — full annotation on UniProt →
Function. Amino acid transporter that specifically mediates the pH-dependent export of the cationic amino acids arginine, histidine and lysine from lysosomes.
Subcellular location. Lysosome membrane.
Domain organisation. The di-leucine motif mediates lysosomal localization.
Miscellaneous. May play a role in the export from lysosomes of cysteamine-cysteine mixed disulfide (MxD), the product formed upon treatment by cysteamine of patients with cystinosis, a disease characterized by the accumulation of cystine in the lysosomes.
Similarity. Belongs to the laat-1 family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q6ZP29-1 | 1 | yes |
| Q6ZP29-2 | 2 | |
| Q6ZP29-3 | 3 |
RefSeq proteins (4): NP_001035214, NP_001035215, NP_001274460, NP_060235 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006603 | PQ-loop_rpt | Repeat |
| IPR051415 | LAAT-1 | Family |
Pfam: PF04193
UniProt features (29 total): topological domain 8, transmembrane region 7, sequence conflict 4, domain 2, splice variant 2, mutagenesis site 2, chain 1, short sequence motif 1, glycosylation site 1, sequence variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6ZP29-F1 | 83.40 | 0.47 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Glycosylation sites (1): 10
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 55 | abolishes uptake of arginine and lysine. |
| 288–289 | abolishes lysosomal localization. |
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-5223345 | Miscellaneous transport and binding events |
| R-HSA-382551 | Transport of small molecules |
MSigDB gene sets: 115 (showing top):
GOCC_VACUOLAR_MEMBRANE, GOBP_AMINO_ACID_TRANSMEMBRANE_TRANSPORT, CAGCTG_AP4_Q5, GOBP_ORGANIC_ACID_TRANSPORT, GOBP_AMINO_ACID_TRANSPORT, GOBP_BASIC_AMINO_ACID_TRANSPORT, GOBP_ORGANIC_ANION_TRANSPORT, LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN, GOBP_ORGANIC_CATION_TRANSPORT, GOBP_TRANSMEMBRANE_TRANSPORT, GOBP_AZOLE_TRANSMEMBRANE_TRANSPORT, GOBP_HOMEOSTATIC_PROCESS, GOBP_CHEMICAL_HOMEOSTASIS, GOMF_L_AMINO_ACID_TRANSMEMBRANE_TRANSPORTER_ACTIVITY, GOMF_AMINO_ACID_TRANSMEMBRANE_TRANSPORTER_ACTIVITY
GO Biological Process (7): lysine transport (GO:0015819), transmembrane transport (GO:0055085), intracellular amino acid homeostasis (GO:0080144), L-histidine transmembrane transport (GO:0089709), L-lysine transmembrane transport (GO:1903401), L-arginine transmembrane transport (GO:1903826), amino acid transport (GO:0006865)
GO Molecular Function (5): L-histidine transmembrane transporter activity (GO:0005290), basic amino acid transmembrane transporter activity (GO:0015174), L-lysine transmembrane transporter activity (GO:0015189), L-arginine transmembrane transporter activity (GO:0061459), protein binding (GO:0005515)
GO Cellular Component (4): lysosomal membrane (GO:0005765), organelle membrane (GO:0031090), lysosome (GO:0005764), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Transport of small molecules | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| L-alpha-amino acid transmembrane transport | 3 |
| basic amino acid transmembrane transporter activity | 3 |
| L-amino acid transmembrane transporter activity | 3 |
| L-lysine transport | 2 |
| transport | 2 |
| basic amino acid transmembrane transport | 2 |
| basic amino acid transport | 1 |
| cellular process | 1 |
| intracellular chemical homeostasis | 1 |
| aromatic amino acid transport | 1 |
| azole transmembrane transport | 1 |
| aromatic amino acid transmembrane transporter activity | 1 |
| L-histidine transmembrane transport | 1 |
| azole transmembrane transporter activity | 1 |
| amino acid transmembrane transporter activity | 1 |
| L-lysine transmembrane transport | 1 |
| L-arginine transmembrane transport | 1 |
| binding | 1 |
| lysosome | 1 |
| lytic vacuole membrane | 1 |
| membrane | 1 |
| membrane-bounded organelle | 1 |
| lytic vacuole | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
548 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SLC66A1 | CTNS | O60931 | 811 |
| SLC66A1 | C9orf72 | Q96LT7 | 575 |
| SLC66A1 | SLC36A1 | Q7Z2H8 | 565 |
| SLC66A1 | SLC38A7 | Q9NVC3 | 565 |
| SLC66A1 | WDR41 | Q9HAD4 | 546 |
| SLC66A1 | SMCR8 | Q8TEV9 | 544 |
| SLC66A1 | SLC38A9 | Q8NBW4 | 539 |
| SLC66A1 | ZSWIM2 | Q8NEG5 | 451 |
| SLC66A1 | NPRL3 | Q12980 | 451 |
| SLC66A1 | MRTO4 | Q9UKD2 | 433 |
| SLC66A1 | EBNA1BP2 | Q99848 | 421 |
| SLC66A1 | ELP2 | Q6IA86 | 396 |
| SLC66A1 | MCOLN1 | Q9GZU1 | 389 |
| SLC66A1 | TMEM175 | Q9BSA9 | 377 |
| SLC66A1 | TASOR2 | Q5VWN6 | 360 |
IntAct
1 interactions, top by confidence:
BioGRID (13): PQLC2 (Affinity Capture-RNA), PQLC2 (Two-hybrid), SLC35C2 (Two-hybrid), AQP6 (Two-hybrid), GPRC5D (Two-hybrid), GJA8 (Two-hybrid), SLC39A2 (Two-hybrid), NINJ2 (Two-hybrid), GPR152 (Two-hybrid), GJC1 (Two-hybrid), GJA5 (Two-hybrid), PQLC2 (Negative Genetic), PQLC2 (Affinity Capture-RNA)
ESM2 similar proteins: A1L272, A4FV75, A5A6S6, A6QL92, B0BMY1, B8AF63, F1NXU8, O54902, O80605, P49281, P49282, P57057, P57758, Q17QZ3, Q28HR4, Q3TIT8, Q5EAL3, Q5F383, Q5F3N0, Q5R6J3, Q5R839, Q5RD30, Q5ZJX0, Q640L2, Q6DHU1, Q6DIV6, Q6IR74, Q6J4K2, Q6NTJ7, Q6P499, Q6PF45, Q6YK44, Q6ZP29, Q8BGN5, Q8BJA2, Q8BXA5, Q8C4N4, Q8IVJ1, Q8NA29, Q8NCC5
Diamond homologs: A1A4F0, B0BMY1, Q5ZJX0, Q6ZP29, Q8C4N4, Q95XZ6, Q10482, Q5M880, Q80XM9, Q9VCR7
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
79 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 56 |
| Likely benign | 3 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 4751936 | NM_001040125.2(SLC66A1):c.618+1G>A | Pathogenic |
SpliceAI
1568 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:19324630:C:G | acceptor_gain | 1.0000 |
| 1:19324630:CA:C | acceptor_loss | 1.0000 |
| 1:19324631:A:AG | acceptor_gain | 1.0000 |
| 1:19324631:A:T | acceptor_loss | 1.0000 |
| 1:19324632:G:GG | acceptor_gain | 1.0000 |
| 1:19324632:GCC:G | acceptor_gain | 1.0000 |
| 1:19324632:GCCA:G | acceptor_gain | 1.0000 |
| 1:19324760:CAG:C | donor_loss | 1.0000 |
| 1:19324761:AGGTG:A | donor_loss | 1.0000 |
| 1:19324762:GGTG:G | donor_loss | 1.0000 |
| 1:19324764:T:G | donor_loss | 1.0000 |
| 1:19325578:TCTGT:T | donor_gain | 1.0000 |
| 1:19325581:GT:G | donor_gain | 1.0000 |
| 1:19325582:TGTG:T | donor_loss | 1.0000 |
| 1:19325583:G:GG | donor_gain | 1.0000 |
| 1:19325584:T:G | donor_loss | 1.0000 |
| 1:19325585:GAGT:G | donor_loss | 1.0000 |
| 1:19325586:AGTA:A | donor_loss | 1.0000 |
| 1:19326240:TGCA:T | acceptor_loss | 1.0000 |
| 1:19326241:GCAGT:G | acceptor_loss | 1.0000 |
| 1:19326242:CAGTG:C | acceptor_loss | 1.0000 |
| 1:19326243:A:AG | acceptor_gain | 1.0000 |
| 1:19326244:G:GT | acceptor_gain | 1.0000 |
| 1:19326244:GT:G | acceptor_gain | 1.0000 |
| 1:19326244:GTGT:G | acceptor_gain | 1.0000 |
| 1:19326244:GTGTC:G | acceptor_gain | 1.0000 |
| 1:19326529:A:AG | acceptor_gain | 1.0000 |
| 1:19326530:G:GG | acceptor_gain | 1.0000 |
| 1:19326530:GC:G | acceptor_gain | 1.0000 |
| 1:19326530:GCC:G | acceptor_gain | 1.0000 |
AlphaMissense
1865 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:19317822:T:C | F49L | 0.998 |
| 1:19317824:T:A | F49L | 0.998 |
| 1:19317824:T:G | F49L | 0.998 |
| 1:19324700:T:A | W78R | 0.998 |
| 1:19324700:T:C | W78R | 0.998 |
| 1:19326579:A:C | S192R | 0.998 |
| 1:19326581:C:A | S192R | 0.998 |
| 1:19326581:C:G | S192R | 0.998 |
| 1:19327289:C:A | N227K | 0.998 |
| 1:19327289:C:G | N227K | 0.998 |
| 1:19327383:A:C | S259R | 0.998 |
| 1:19327385:C:A | S259R | 0.998 |
| 1:19327385:C:G | S259R | 0.998 |
| 1:19327405:A:C | D266A | 0.998 |
| 1:19324713:A:C | D82A | 0.997 |
| 1:19326568:G:A | G188D | 0.997 |
| 1:19327371:T:A | W255R | 0.997 |
| 1:19327371:T:C | W255R | 0.997 |
| 1:19327404:G:C | D266H | 0.997 |
| 1:19327405:A:T | D266V | 0.997 |
| 1:19317819:T:C | C48R | 0.996 |
| 1:19324712:G:C | D82H | 0.996 |
| 1:19324713:A:T | D82V | 0.996 |
| 1:19324723:C:A | N85K | 0.996 |
| 1:19324723:C:G | N85K | 0.996 |
| 1:19327284:G:T | G226W | 0.996 |
| 1:19324688:T:C | F74L | 0.995 |
| 1:19324689:T:C | F74S | 0.995 |
| 1:19324690:C:A | F74L | 0.995 |
| 1:19324690:C:G | F74L | 0.995 |
dbSNP variants (sampled 300 via entrez): RS1000061803 (1:19319806 G>A), RS1000083657 (1:19310817 T>G), RS1000167266 (1:19315551 A>G), RS1000265913 (1:19325643 G>A,C,T), RS1000439086 (1:19320630 T>A,C,G), RS1000444243 (1:19310455 T>C), RS1000531598 (1:19321101 G>A,T), RS1000538528 (1:19311456 G>A,C), RS1000599480 (1:19316530 A>G), RS1000739254 (1:19324994 AAGG>A), RS1000975808 (1:19329896 T>G), RS1001005319 (1:19324840 C>T), RS1001119566 (1:19321826 A>C,G,T), RS1001182856 (1:19311668 T>C,G), RS1001183460 (1:19322131 G>A,T)
Disease associations
OMIM: gene MIM:614760 | disease phenotypes: MIM:219800
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| retinitis pigmentosa | Strong | Autosomal recessive |
Mondo (2): nephropathic cystinosis (MONDO:0100151), retinitis pigmentosa (MONDO:0019200)
Orphanet (2): Cystinosis (Orphanet:213), Infantile nephropathic cystinosis (Orphanet:411629)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST007001_1 | Cerebrospinal AB1-42 levels in normal cognition | 5.000000e-07 |
| GCST007932_49 | Medication use (thyroid preparations) | 9.000000e-09 |
| GCST008758_46 | Pre-treatment viral load in HIV-1 infection | 2.000000e-17 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004670 | beta-amyloid 1-42 measurement |
| EFO:0009933 | Thyroid preparation use measurement |
| EFO:0010125 | viral load |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D012174 | Retinitis Pigmentosa | C11.270.684; C11.768.585.658.500; C16.320.290.684 |
| C535335 | Abderhalden-Kaufmann-Lignac syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: transporter — SLC66 Lysosomal amino acid transporters
CTD chemical–gene interactions
24 total (human), top 24 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Acetaminophen | increases expression | 3 |
| Cyclosporine | increases expression | 3 |
| sodium arsenite | increases expression, affects cotreatment, increases abundance | 2 |
| Arsenic | affects methylation, affects cotreatment, increases abundance, increases expression | 2 |
| Valproic Acid | affects expression, decreases expression | 2 |
| bisphenol A | affects expression | 1 |
| manganese chloride | increases abundance, increases expression, affects cotreatment | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| K 7174 | increases expression | 1 |
| abrine | increases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Azathioprine | increases expression | 1 |
| Cadmium | increases expression | 1 |
| Calcitriol | increases expression, affects cotreatment | 1 |
| Cisplatin | increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Manganese | increases expression, affects cotreatment, increases abundance | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Smoke | decreases expression | 1 |
| Dihydrotestosterone | increases expression | 1 |
| Testosterone | affects cotreatment, increases expression | 1 |
| Copper Sulfate | increases expression | 1 |
| Particulate Matter | increases abundance, increases expression | 1 |
Cellosaurus cell lines
2 cell lines: 2 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_TG36 | HAP1 PQLC2 (-) 1 | Cancer cell line | Male |
| CVCL_XR81 | HAP1 PQLC2 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
240 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00717080 | PHASE4 | COMPLETED | The Role of Capsular Tension Ring (CTR) in Anterior Capsular Contraction |
| NCT00000114 | PHASE3 | COMPLETED | Randomized Trial of Vitamin A and Vitamin E Supplementation for Retinitis Pigmentosa |
| NCT00000116 | PHASE3 | COMPLETED | Randomized Trial of DHA for Retinitis Pigmentosa Patients Receiving Vitamin A |
| NCT00346333 | PHASE3 | COMPLETED | Clinical Trial of Lutein for Patients With Retinitis Pigmentosa Receiving Vitamin A |
| NCT01786395 | PHASE3 | TERMINATED | Phase III Efficacy and Safety Clinical Study of UF-021 for Treatment of Retinitis Pigmentosa |
| NCT04224207 | PHASE3 | COMPLETED | Management of Retinitis Pigmentosa by Mesenchymal Stem Cells by Wharton’s Jelly Derived Mesenchymal Stem Cells |
| NCT04636853 | PHASE3 | COMPLETED | CB-PRP in Retinitis Pigmentosa and Dry Age-related Macular Degeneration |
| NCT05537220 | PHASE3 | ACTIVE_NOT_RECRUITING | Oral N-acetylcysteine for Retinitis Pigmentosa |
| NCT05800301 | PHASE3 | COMPLETED | Management of Retinitis Pigmentosa Via Combination of Wharton’s Jelly-derived Mesenchymal Stem Cells and Magnovision |
| NCT05926583 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study of AAV5-hRKp.RPGR for the Treatment of Japanese Participants With X-linked Retinitis Pigmentosa |
| NCT06388200 | PHASE3 | ACTIVE_NOT_RECRUITING | A Phase 3 Study Of OCU400 Gene Therapy for the Treatment Of Retinitis Pigmentosa |
| NCT07082855 | PHASE3 | NOT_YET_RECRUITING | A Multicenter, Randomized, Double-Blind, Controlled Clinical Study of Minocycline for the Treatment of Retinitis Pigmentosa |
| NCT07290530 | PHASE3 | NOT_YET_RECRUITING | 24-Month Trial of NPI-001 for the Preservation of Photoreceptors in Retinitis Pigmentosa Associated With Usher Syndrome |
| NCT00100230 | PHASE2 | COMPLETED | DHA and X-Linked Retinitis Pigmentosa |
| NCT00447980 | PHASE2 | COMPLETED | A Study of Encapsulated Cell Technology (ECT) Implant for Participants With Early Stage Retinitis Pigmentosa |
| NCT00447993 | PHASE2 | COMPLETED | A Study of Encapsulated Cell Technology (ECT) Implant for Patients With Late Stage Retinitis Pigmentosa |
| NCT01233609 | PHASE2 | COMPLETED | Trial of Oral Valproic Acid for Retinitis Pigmentosa |
| NCT01399515 | PHASE2 | COMPLETED | Efficacy and Safety of Oral Valproic Acid for Retinitis Pigmentosa |
| NCT01530659 | PHASE2 | COMPLETED | Retinal Imaging in CNTF -Releasing Encapsulated Cell Implant Treated Patients for Early-stage Retinitis Pigmentosa |
| NCT01560715 | PHASE2 | COMPLETED | Autologous Bone Marrow-Derived Stem Cells Transplantation For Retinitis Pigmentosa |
| NCT02609165 | PHASE2 | COMPLETED | Nerve Growth Factor Eye Drops Treatment in Patients With Retinitis Pigmentosa and Cystoid Macular Edema |
| NCT02661711 | PHASE2 | COMPLETED | Aflibercept for Macular Oedema With Underlying Retinitis Pigmentosa (AMOUR) Study |
| NCT02804360 | PHASE2 | UNKNOWN | Intravitreal Dexamethasone Implant in Retinitis Pigmentosa-related Macular Edema- a Retrospective Study |
| NCT02837640 | PHASE2 | UNKNOWN | Studying a Potential Protective Effect of L-Dopa on Retinitis Pigmentosa |
| NCT03073733 | PHASE2 | COMPLETED | Safety and Efficacy of Intravitreal Injection of Human Retinal Progenitor Cells in Adults With Retinitis Pigmentosa |
| NCT04068207 | PHASE2 | COMPLETED | Minocycline Treatment in Retinitis Pigmentosa |
| NCT04356716 | PHASE2 | COMPLETED | Sildenafil for Treatment of Choroidal Ischemia |
| NCT04604899 | PHASE2 | COMPLETED | Safety of Repeat Intravitreal Injection of Human Retinal Progenitor Cells (jCell) in Adult Subjects With Retinitis Pigmentosa |
| NCT04763369 | PHASE2 | UNKNOWN | Investigation of Therapeutic Efficacy and Safety of UMSCs for the Management of Retinitis Pigmentosa (RP) |
| NCT04864496 | PHASE2 | UNKNOWN | Effects of Treatment With N- Acetylcysteine on Visual Outcomes in Patients With Retinitis Pigmentosa |
| NCT04945772 | PHASE2 | COMPLETED | Efficacy and Safety of MCO-010 Optogenetic Therapy in Adults With Retinitis Pigmentosa [RESTORE] |
| NCT05085964 | PHASE2 | TERMINATED | An Open-Label Extension Study to Evaluate Safety & Tolerability of QR-421a in Subjects With Retinitis Pigmentosa |
| NCT05392179 | PHASE2 | COMPLETED | A Study in Subjects With Retinitis Pigmentosa |
| NCT06627179 | PHASE2 | RECRUITING | Study to Evaluate Ultevursen in Subjects With Retinitis Pigmentosa (RP) Due to Mutations in Exon 13 of the USH2A Gene |
| NCT06628947 | PHASE2 | RECRUITING | A Phase II Study of Intravitreal KIO-301 in Patients With Late-stage Retinitis Pigmentosa |
| NCT06912633 | PHASE2 | RECRUITING | Safety of a Single, Intravitreal Injection of 6.0M jCell (Famzeretcel) in Retinitis Pigmentosa (RP) |
| NCT00063765 | PHASE1 | COMPLETED | Evaluation of Safety of Ciliary Neurotrophic Factor Implants in the Eye |
| NCT00065455 | PHASE1 | COMPLETED | Investigating the Effect of Vitamin A Supplementation on Retinitis Pigmentosa |
| NCT00458575 | PHASE1 | TERMINATED | A Study to Evaluate the Safety of CNTO 2476 in Patients With Advanced Retinitis Pigmentosa |
| NCT01068561 | PHASE1 | COMPLETED | Autologous Bone Marrow-Derived Stem Cells Transplantation For Retinitis Pigmentosa |
Related Atlas pages
- Associated diseases: retinitis pigmentosa 1
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): nephropathic cystinosis, retinitis pigmentosa