SLC6A12-AS1

Summary

SLC6A12-AS1 (SLC6A12 antisense RNA 1, HGNC:40548) is a long non-coding RNA gene on chromosome 12p13.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40548
Approved symbol	SLC6A12-AS1
Name	SLC6A12 antisense RNA 1
Location	12p13.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000256577
Ensembl biotype	lncRNA
Entrez	101929384
RNAcentral	URS000075E0DA — lncRNA, 761 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000539568, ENST00000747092, ENST00000747093, ENST00000747094, ENST00000747095

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000539568 — 3 exons

Exon	Start	End
ENSE00002273686	204640	205094
ENSE00002315148	204018	204229
ENSE00002317725	203642	203739

Expression profiles

Bgee: expression breadth ubiquitous, 118 present calls, max score 86.71.

Top tissues by expression

211 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.71	gold quality
putamen	UBERON:0001874	70.00	gold quality
left lobe of thyroid gland	UBERON:0001120	69.16	gold quality
right lobe of thyroid gland	UBERON:0001119	68.81	gold quality
metanephros cortex	UBERON:0010533	68.19	gold quality
thyroid gland	UBERON:0002046	67.26	gold quality
right frontal lobe	UBERON:0002810	66.37	gold quality
amygdala	UBERON:0001876	66.35	gold quality
Brodmann (1909) area 9	UBERON:0013540	64.67	gold quality
anterior cingulate cortex	UBERON:0009835	64.33	gold quality
right hemisphere of cerebellum	UBERON:0014890	64.32	gold quality
ganglionic eminence	UBERON:0004023	64.23	gold quality
caudate nucleus	UBERON:0001873	63.87	gold quality
cerebellar hemisphere	UBERON:0002245	62.92	gold quality
right uterine tube	UBERON:0001302	62.80	gold quality
nucleus accumbens	UBERON:0001882	62.70	gold quality
cerebellar cortex	UBERON:0002129	62.69	gold quality
cerebellum	UBERON:0002037	61.09	gold quality
hypothalamus	UBERON:0001898	61.03	gold quality
prefrontal cortex	UBERON:0000451	60.85	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	60.66	gold quality
metanephros	UBERON:0000081	59.97	gold quality
neocortex	UBERON:0001950	59.38	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	59.25	gold quality
substantia nigra	UBERON:0002038	59.20	gold quality
frontal cortex	UBERON:0001870	58.72	gold quality
brain	UBERON:0000955	58.39	gold quality
forebrain	UBERON:0001890	58.38	gold quality
right lobe of liver	UBERON:0001114	58.21	gold quality
gall bladder	UBERON:0002110	58.08	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.