SLC6A17-AS1

Summary

SLC6A17-AS1 (SLC6A17 antisense RNA 1, HGNC:41279) is a long non-coding RNA gene on chromosome 1p13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41279
Approved symbol	SLC6A17-AS1
Name	SLC6A17 antisense RNA 1
Location	1p13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227091
Ensembl biotype	lncRNA
Entrez	105378897
RNAcentral	URS0000EF0561 — lncRNA, 1155 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000418579, ENST00000430098, ENST00000443008

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000418579 — 2 exons

Exon	Start	End
ENSE00001602337	110168150	110168220
ENSE00001769985	110167081	110167193

Expression profiles

Bgee: expression breadth broad, 76 present calls, max score 63.78.

Top tissues by expression

76 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
vermiform appendix	UBERON:0001154	63.78	gold quality
body of pancreas	UBERON:0001150	62.35	gold quality
corpus callosum	UBERON:0002336	60.49	gold quality
monocyte	CL:0000576	60.04	gold quality
right testis	UBERON:0004534	58.83	gold quality
vagina	UBERON:0000996	58.09	gold quality
left testis	UBERON:0004533	57.62	gold quality
testis	UBERON:0000473	56.89	gold quality
pancreas	UBERON:0001264	56.43	gold quality
left ovary	UBERON:0002119	56.39	gold quality
tibial nerve	UBERON:0001323	56.15	gold quality
islet of Langerhans	UBERON:0000006	55.88	gold quality
cerebellum	UBERON:0002037	54.86	gold quality
cerebellar cortex	UBERON:0002129	54.84	gold quality
spleen	UBERON:0002106	54.81	gold quality
cerebellar hemisphere	UBERON:0002245	54.80	gold quality
hindlimb stylopod muscle	UBERON:0004252	54.34	silver quality
blood	UBERON:0000178	54.06	gold quality
prefrontal cortex	UBERON:0000451	53.61	gold quality
right hemisphere of cerebellum	UBERON:0014890	53.61	gold quality
small intestine	UBERON:0002108	52.70	gold quality
tibial artery	UBERON:0007610	52.37	gold quality
muscle layer of sigmoid colon	UBERON:0035805	52.28	gold quality
stomach	UBERON:0000945	52.14	gold quality
right ovary	UBERON:0002118	51.47	gold quality
small intestine Peyer’s patch	UBERON:0003454	51.33	gold quality
prostate gland	UBERON:0002367	50.74	gold quality
placenta	UBERON:0001987	50.64	gold quality
multicellular organism	UBERON:0000468	50.43	gold quality
esophagus mucosa	UBERON:0002469	49.86	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.