SLC75A1

gene
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Also known as IT10C3TETRAN

Summary

SLC75A1 (solute carrier family 75 member 1, HGNC:16894) is a protein-coding gene on chromosome 4p16.3, encoding Solute carrier family 75 member 1 (Q14728). Probable organic anion transporter which may serve as a transporter for some non-steroidal anti-inflammatory drugs (NSAIDs) as well as other organic anions across the luminal membranes of renal proximal tubules at the final excretion step into the urine.

This gene encodes a member of the major facilitator superfamily of transporter proteins. The encoded protein likely functions in efflux of organic anions, including the non-steroidal anti-inflammatory drugs indomethacin and diclofenac. Alternatively spliced transcript variants have been described.

Source: NCBI Gene 10227 — RefSeq curated summary.

At a glance

  • GWAS associations: 1
  • Clinical variants (ClinVar): 90 total
  • Druggable target: yes
  • MANE Select transcript: NM_001146069

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:16894
Approved symbolSLC75A1
Namesolute carrier family 75 member 1
Location4p16.3
Locus typegene with protein product
StatusApproved
AliasesIT10C3, TETRAN, SLC75A1
Ensembl geneENSG00000109736
Ensembl biotypeprotein_coding
OMIM610977
Entrez10227

Gene structure

Transcript identifiers

Ensembl transcripts: 30 — 24 protein_coding, 4 retained_intron, 2 nonsense_mediated_decay

ENST00000329687, ENST00000355443, ENST00000503596, ENST00000507272, ENST00000507555, ENST00000508221, ENST00000508276, ENST00000509676, ENST00000512781, ENST00000514031, ENST00000514800, ENST00000866676, ENST00000866677, ENST00000866678, ENST00000866679, ENST00000866680, ENST00000866681, ENST00000866682, ENST00000866683, ENST00000866684, ENST00000866685, ENST00000866686, ENST00000932268, ENST00000932269, ENST00000967825, ENST00000967826, ENST00000967827, ENST00000967828, ENST00000967829, ENST00000967830

RefSeq mRNA: 4 — MANE Select: NM_001146069 NM_001120, NM_001146069, NM_001363679, NM_001410703

CCDS: CCDS3365, CCDS87203, CCDS93471

Canonical transcript exons

ENST00000355443 — 13 exons

ExonStartEnd
ENSE0000069926229326002932758
ENSE0000069926329331062933209
ENSE0000203930529347692934825
ENSE0000347813829312272931274
ENSE0000348603129318252931936
ENSE0000349180529315552931663
ENSE0000353541729320452932153
ENSE0000353841329310612931150
ENSE0000359594829313752931465
ENSE0000360477129305672930953
ENSE0000365453829337532933944
ENSE0000366137529335672933663
ENSE0000367752329323512932512

Expression profiles

Bgee: expression breadth ubiquitous, 270 present calls, max score 98.54.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 28.3989 / max 692.2522, expressed in 1811 samples.

FANTOM5 promoters (6 alternative TSS)

Promoter IDTPM avgSamples expressed
5115626.30191810
511551.0057419
511530.447076
511540.368877
511510.179146
511520.096529

Top tissues by expression

291 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
right uterine tubeUBERON:000130298.54gold quality
oocyteCL:000002398.37gold quality
right hemisphere of cerebellumUBERON:001489098.03gold quality
cerebellar hemisphereUBERON:000224597.73gold quality
granulocyteCL:000009497.65gold quality
cerebellar cortexUBERON:000212997.62gold quality
metanephros cortexUBERON:001053397.16gold quality
endocervixUBERON:000045897.15gold quality
right lobe of thyroid glandUBERON:000111997.14gold quality
right ovaryUBERON:000211897.09gold quality
left ovaryUBERON:000211996.96gold quality
left lobe of thyroid glandUBERON:000112096.94gold quality
adenohypophysisUBERON:000219696.76gold quality
left uterine tubeUBERON:000130396.63gold quality
tibial nerveUBERON:000132396.52gold quality
body of uterusUBERON:000985396.51gold quality
mucosa of transverse colonUBERON:000499196.45gold quality
upper lobe of left lungUBERON:000895296.36gold quality
cerebellumUBERON:000203796.08gold quality
ectocervixUBERON:001224995.99gold quality
right lungUBERON:000216795.96gold quality
body of stomachUBERON:000116195.95gold quality
secondary oocyteCL:000065595.79gold quality
small intestine Peyer’s patchUBERON:000345495.79gold quality
thyroid glandUBERON:000204695.78gold quality
omental fat padUBERON:001041495.67gold quality
right frontal lobeUBERON:000281095.66gold quality
peritoneumUBERON:000235895.62gold quality
lower esophagus mucosaUBERON:003583495.58gold quality
ventricular zoneUBERON:000305395.57gold quality

Single-cell (SCXA)

Detected in 3 experiment(s), a significant marker in 2.

ExperimentMarker?Max mean expression
E-MTAB-9067yes14.98
E-ANND-3yes10.81
E-MTAB-7303no1001.99

Regulation

Is transcription factor: no

miRNA regulators (miRDB)

7 targeting SLC75A1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-4692100.0067.322066
HSA-MIR-495-3P99.9672.814197
HSA-MIR-568899.9673.234504
HSA-MIR-66199.0965.942062
HSA-MIR-939-3P98.9765.072347
HSA-MIR-548Q98.7165.35563
HSA-MIR-466097.7967.441328

Literature-anchored findings (GeneRIF, showing 2)

  • A BLAST search identified the possible human orthologue of Tpo1p, tetracycline transporter-like protein (TETRAN), whose overexpression in cultured human cells caused resistance to some NSAIDs, suggesting that TETRAN is an efflux pump for some NSAIDs. (PMID:17362938)
  • TETRAN is a novel human organic anion transporter, and that it serves as a transporter for some NSAIDs and various other organic anions at the final excretion step. (PMID:18638446)

Cross-species orthologs

23 orthologs

OrganismSymbolGene ID
danio_reriomfsd14a2ENSDARG00000013117
danio_reriomfsd1lENSDARG00000070957
danio_reriomfsd8l2ENSDARG00000076959
danio_reriomfsd10ENSDARG00000086786
danio_rerioENSDARG00000087525
mus_musculusMfsd10ENSMUSG00000001082
rattus_norvegicusMfsd10ENSRNOG00000012534
drosophila_melanogasterrtetFBGN0028468
drosophila_melanogasterCG11537FBGN0035400
drosophila_melanogasterCG18281FBGN0037003
drosophila_melanogasterCG17637FBGN0037004
drosophila_melanogasterCG5078FBGN0037005
caenorhabditis_elegansWBGENE00010182
caenorhabditis_elegansWBGENE00010282
caenorhabditis_elegansWBGENE00012222
caenorhabditis_elegansWBGENE00016093
caenorhabditis_elegansWBGENE00016094
caenorhabditis_elegansWBGENE00016095
caenorhabditis_elegansWBGENE00017339
caenorhabditis_elegansWBGENE00017861
caenorhabditis_elegansWBGENE00020798
caenorhabditis_elegansWBGENE00021814
caenorhabditis_elegansWBGENE00021870

Paralogs (6): MFSD1 (ENSG00000118855), MFSD9 (ENSG00000135953), MFSD14B (ENSG00000148110), MFSD14A (ENSG00000156875), MFSD8 (ENSG00000164073), MFSD5 (ENSG00000182544)

Protein

Protein identifiers

Solute carrier family 75 member 1Q14728 (reviewed: Q14728)

Alternative names: Major facilitator superfamily domain-containing protein 10, Tetracycline transporter-like protein

All UniProt accessions (6): Q14728, D6R9N3, D6RA47, D6RE79, D6RHV1, D6RIZ4

UniProt curated annotations — full annotation on UniProt →

Function. Probable organic anion transporter which may serve as a transporter for some non-steroidal anti-inflammatory drugs (NSAIDs) as well as other organic anions across the luminal membranes of renal proximal tubules at the final excretion step into the urine.

Subcellular location. Nucleus inner membrane. Cell membrane.

Tissue specificity. Expressed in luminal membrane of renal tubules (at protein level). Detected in all tissues tested with higher expression in heart, splee, kidney, leukocytes and prostate.

Similarity. Belongs to the SLC75A transporter family.

RefSeq proteins (4): NP_001111, NP_001139541, NP_001350608, NP_001397632 (=MANE)

Domains & families (InterPro)

IDNameType
IPR011701MFSFamily
IPR020846MFS_domDomain
IPR036259MFS_trans_sfHomologous_superfamily

Pfam: PF07690

UniProt features (39 total): helix 24, transmembrane region 11, strand 2, chain 1, sequence conflict 1

Structure

Experimental structures (PDB)

1 structures.

PDBMethodResolution (Å)
6S4MX-RAY DIFFRACTION2.4

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q14728-F192.020.87

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 110 (showing top): GOBP_SODIUM_INDEPENDENT_ORGANIC_ANION_TRANSPORT, MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP, GOBP_ORGANIC_HYDROXY_COMPOUND_TRANSPORT, ONKEN_UVEAL_MELANOMA_UP, WATANABE_RECTAL_CANCER_RADIOTHERAPY_RESPONSIVE_UP, KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_DN, GOBP_ORGANIC_ANION_TRANSPORT, chr4p16, LIAO_METASTASIS, GOCC_APICAL_PLASMA_MEMBRANE, LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN, GRUETZMANN_PANCREATIC_CANCER_UP, IVANOVA_HEMATOPOIESIS_INTERMEDIATE_PROGENITOR, CONCANNON_APOPTOSIS_BY_EPOXOMICIN_DN, MILI_PSEUDOPODIA_CHEMOTAXIS_DN

GO Biological Process (4): apoptotic process (GO:0006915), sodium-independent organic anion transport (GO:0043252), tetracycline transmembrane transport (GO:0015904), transmembrane transport (GO:0055085)

GO Molecular Function (4): tetracycline transmembrane transporter activity (GO:0008493), obsolete organic anion transmembrane transporter activity (GO:0008514), protein binding (GO:0005515), transmembrane transporter activity (GO:0022857)

GO Cellular Component (7): nuclear inner membrane (GO:0005637), membrane (GO:0016020), cytoplasmic vesicle membrane (GO:0030659), brush border membrane (GO:0031526), nucleus (GO:0005634), plasma membrane (GO:0005886), organelle membrane (GO:0031090)

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
transmembrane transport3
membrane2
programmed cell death1
apoptotic signaling pathway1
execution phase of apoptosis1
organic hydroxy compound transport1
transport1
cellular process1
alcohol transmembrane transporter activity1
tetracycline transmembrane transport1
binding1
transporter activity1
organelle inner membrane1
nuclear membrane1
cellular anatomical structure1
vesicle membrane1
cytoplasmic vesicle1
brush border1
apical plasma membrane1
cell projection membrane1
intracellular membrane-bounded organelle1
cell periphery1
membrane-bounded organelle1

Protein interactions and networks

STRING

1099 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
SLC75A1SERINC5Q86VE9968
SLC75A1MFSD6Q6ZSS7677
SLC75A1SVOPLQ8N434665
SLC75A1SLC61A1Q6N075632
SLC75A1SVOPQ8N4V2628
SLC75A1MFSD11O43934625
SLC75A1UNC93AQ86WB7614
SLC75A1SPNS3Q6ZMD2587
SLC75A1SPNS1Q9H2V7572
SLC75A1SLC33A2Q96ES6557
SLC75A1SLC68A1Q14CX5549
SLC75A1MFSD12Q6NUT3537
SLC75A1SLC67A2Q8NBP5518
SLC75A1MFSD6LQ8IWD5513
SLC75A1MFSD2BA6NFX1513

IntAct

35 interactions, top by confidence:

ABTypeScore
MFSD10PECAM1psi-mi:“MI:0915”(physical association)0.560
KLK6MFSD10psi-mi:“MI:0915”(physical association)0.560
MFSD10TGFBR2psi-mi:“MI:0915”(physical association)0.560
CBX5MFSD10psi-mi:“MI:0915”(physical association)0.560
TMEM63AAP3B1psi-mi:“MI:0914”(association)0.530
TMEM63AAP3D1psi-mi:“MI:0914”(association)0.530
CHRNA4FZD6psi-mi:“MI:0914”(association)0.530
LPAR1TMEM223psi-mi:“MI:0914”(association)0.530
MFSD10PB2psi-mi:“MI:0915”(physical association)0.370
MFSD10F2RL1psi-mi:“MI:0915”(physical association)0.370
MFSD10NPSR1psi-mi:“MI:0915”(physical association)0.370
ESYT2psi-mi:“MI:0914”(association)0.350
NBASpsi-mi:“MI:0914”(association)0.350
TMEM223psi-mi:“MI:0914”(association)0.350
CYP2C18PGRMC1psi-mi:“MI:0914”(association)0.350
CHRNA3ENTPD6psi-mi:“MI:0914”(association)0.350
SAAL1TMEM223psi-mi:“MI:0914”(association)0.350
MFSD10NDUFS8psi-mi:“MI:0914”(association)0.350
FOSILVBLpsi-mi:“MI:0914”(association)0.350
ATF2ABLIM1psi-mi:“MI:0914”(association)0.350

BioGRID (271): MFSD10 (Biochemical Activity), MFSD10 (Biochemical Activity), MFSD10 (Proximity Label-MS), MFSD10 (Proximity Label-MS), MFSD10 (Affinity Capture-MS), MFSD10 (Affinity Capture-MS), MFSD10 (Affinity Capture-MS), MFSD10 (Proximity Label-MS), MFSD10 (Affinity Capture-MS), MFSD10 (Affinity Capture-MS), MFSD10 (Proximity Label-MS), MFSD10 (Proximity Label-MS), MFSD10 (Proximity Label-MS), MFSD10 (Proximity Label-MS), MFSD10 (Proximity Label-MS)

ESM2 similar proteins: A0A3Q2HW92, A6NDV4, A6NFX1, A6QLK4, B1AWJ5, F1NCD6, F1NJ67, F1PZV2, O35308, O35595, O70461, O95907, Q08DX7, Q0IHM1, Q0P5C0, Q0P5M9, Q13286, Q14728, Q29611, Q2YDU8, Q3T9M1, Q3U481, Q501I9, Q5R8G5, Q5R9A1, Q5U419, Q60HH0, Q61124, Q66H95, Q6NUT3, Q6UXD7, Q6ZMD2, Q7RTT9, Q8BFQ6, Q8CE47, Q8NA29, Q8R0G7, Q8R139, Q8TB61, Q8VCW4

Diamond homologs: A0A0C1C354, A0A0D1DYJ6, A0A0E3D8L1, A0A0F9XXG3, A0A0N7D7C9, A0A0U5GJZ5, A0A140JWS3, A0A142I724, A0A1L9WQV4, A0A1V6PBC8, A0A1W5T3J9, A0A2I1C3U4, A0A2L0P0L8, A0A2Z1U8L7, A0A348HAX9, A0A3G1DJE2, A0A3G9H2R5, A0A411KUX1, A0A443HJZ5, A0A455ZIM6, A0A4P8DK16, A0A4Q4NMP3, A0A5B8YU71, A0A6F8RNA5, A0A6J4B6H5, A0A7L8UVD5, A0A8F4NW86, A0A8K1AW52, A1JKW8, A7MHI9, A9N7L0, B4T9U3, B4TNI8, C6DBD0, D4AXV8, D7PI13, E9R876, F2SH39, J9VHZ4, K5B8L6

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

90 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance65
Likely benign5
Benign0

Top pathogenic / likely-pathogenic (0)

SpliceAI

1919 predictions. Top by Δscore:

VariantEffectΔscore
4:2931272:CGG:Cacceptor_gain1.0000
4:2931273:GGC:Gacceptor_loss1.0000
4:2931274:GCTGG:Gacceptor_loss1.0000
4:2931275:C:CCacceptor_gain1.0000
4:2931276:T:Aacceptor_loss1.0000
4:2931370:CTCA:Cdonor_loss1.0000
4:2931371:TCA:Tdonor_loss1.0000
4:2931372:CA:Cdonor_loss1.0000
4:2931373:A:ACdonor_gain1.0000
4:2931374:C:CCdonor_gain1.0000
4:2931374:C:CTdonor_loss1.0000
4:2931554:CCCG:Cdonor_gain1.0000
4:2931574:T:TAdonor_gain1.0000
4:2931575:C:Adonor_gain1.0000
4:2931820:CCCA:Cdonor_loss1.0000
4:2931821:CCA:Cdonor_loss1.0000
4:2931822:CACCT:Cdonor_loss1.0000
4:2931823:ACCTA:Adonor_loss1.0000
4:2931824:CCTA:Cdonor_gain1.0000
4:2931824:CCTAC:Cdonor_loss1.0000
4:2931827:A:ACdonor_gain1.0000
4:2931828:C:CCdonor_gain1.0000
4:2931828:CTGAA:Cdonor_gain1.0000
4:2931832:A:Cdonor_gain1.0000
4:2932043:A:ACdonor_gain1.0000
4:2932044:C:CCdonor_gain1.0000
4:2932044:CTGT:Cdonor_gain1.0000
4:2932509:CCGC:Cacceptor_gain1.0000
4:2932510:CGCC:Cacceptor_gain1.0000
4:2932595:CTTA:Cdonor_loss1.0000

AlphaMissense

2859 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
4:2932480:G:CF188L0.992
4:2932480:G:TF188L0.992
4:2932482:A:GF188L0.992
4:2933131:C:AR116M0.991
4:2932672:G:CS153R0.990
4:2932672:G:TS153R0.990
4:2932674:T:GS153R0.990
4:2932492:G:CF184L0.988
4:2932492:G:TF184L0.988
4:2932494:A:GF184L0.988
4:2933131:C:GR116T0.988
4:2933807:G:CF39L0.988
4:2933807:G:TF39L0.988
4:2933809:A:GF39L0.988
4:2931107:G:CS402R0.986
4:2931107:G:TS402R0.986
4:2931109:T:GS402R0.986
4:2933130:C:AR116S0.986
4:2933130:C:GR116S0.986
4:2931854:G:CF295L0.985
4:2931854:G:TF295L0.985
4:2931856:A:GF295L0.985
4:2933146:G:AS111F0.984
4:2933190:G:CF96L0.984
4:2933190:G:TF96L0.984
4:2933192:A:GF96L0.984
4:2931881:G:CF286L0.981
4:2931881:G:TF286L0.981
4:2931883:A:GF286L0.981
4:2932481:A:GF188S0.980

dbSNP variants (sampled 300 via entrez): RS1000010069 (4:2934039 G>A), RS1000166912 (4:2930575 A>C), RS1000277392 (4:2934782 G>A,C), RS1000503473 (4:2931464 G>A,C), RS1000522141 (4:2933517 C>T), RS1000586959 (4:2934300 G>A,T), RS1001759170 (4:2934065 C>A,T), RS1002406473 (4:2933355 G>A,T), RS1002898850 (4:2935665 A>G), RS1003031049 (4:2933236 G>A), RS1003248857 (4:2936694 G>A,T), RS1003639712 (4:2934653 A>C,G), RS1004126288 (4:2934883 T>C), RS1004482687 (4:2930403 G>A,T), RS1004832015 (4:2935143 C>T)

Disease associations

OMIM: gene MIM:610977 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

1 associations (top):

StudyTraitp-value
GCST004691_6Huntington’s disease progression3.000000e-06

EFO canonical traits (1, from GWAS)

EFO IDTrait name
EFO:0008336disease progression measurement

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL6067237 (SINGLE PROTEIN)

PharmGKB: 1 entry (VIP=true, CPIC=false)

ChEMBL bioactivities

2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
7.15Kd70.16nMCHEMBL5653589
7.15ED5070.16nMCHEMBL5653589

PubChem BioAssay actives

1 with measured affinity, of 2 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide2148746: Binding affinity to human MFSD10 incubated for 45 mins by Kinobead based pull down assaykd0.0702uM

CTD chemical–gene interactions

28 total (human), top 28 by PubMed support.

ChemicalActions (top 5)PubMed papers
sodium arseniteaffects cotreatment, increases abundance, increases expression, decreases expression4
Air Pollutantsdecreases expression, affects expression, increases abundance2
Arsenicaffects cotreatment, decreases expression, increases abundance, increases expression2
Benzo(a)pyrenedecreases methylation, increases expression2
Tretinoinincreases expression2
Particulate Matterdecreases expression, increases abundance, increases expression2
aristolochic acid Idecreases expression1
bisphenol Aaffects expression1
beta-lapachonedecreases expression, increases expression1
di-n-butylphosphoric acidaffects expression1
deguelindecreases expression1
erucylphospho-N,N,N-trimethylpropylammoniumincreases expression1
(+)-JQ1 compounddecreases expression1
MT19c compounddecreases expression1
4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acidincreases expression1
Acetaminophenincreases expression1
Vehicle Emissionsincreases abundance, increases expression1
Cisplatindecreases expression1
Estradiolaffects expression1
Hydrogen Peroxideaffects cotreatment, decreases expression1
Ozoneaffects expression, increases abundance1
Quercetinincreases expression1
Seleniumincreases expression1
Theophyllineaffects cotreatment, decreases expression1
Tobacco Smoke Pollutiondecreases expression1
Valproic Aciddecreases expression, increases methylation1
Cyclosporinedecreases expression1
Aflatoxin B1increases expression1

ChEMBL screening assays

1 unique, capped per target: 1 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL5651788BindingBinding affinity to human MFSD10 incubated for 45 mins by Kinobead based pull down assayNVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem

Cellosaurus cell lines

3 cell lines: 2 cancer cell line, 1 transformed cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_D4DBHEK-MFSD10-KO-c2Transformed cell lineFemale
CVCL_D4G7HCT116-MFSD10-KO-c18Cancer cell lineMale
CVCL_D4G8HCT116-MFSD10-KO-c24Cancer cell lineMale

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

  • Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Huntington disease