SLC75A1
geneOn this page
Also known as IT10C3TETRAN
Summary
SLC75A1 (solute carrier family 75 member 1, HGNC:16894) is a protein-coding gene on chromosome 4p16.3, encoding Solute carrier family 75 member 1 (Q14728). Probable organic anion transporter which may serve as a transporter for some non-steroidal anti-inflammatory drugs (NSAIDs) as well as other organic anions across the luminal membranes of renal proximal tubules at the final excretion step into the urine.
This gene encodes a member of the major facilitator superfamily of transporter proteins. The encoded protein likely functions in efflux of organic anions, including the non-steroidal anti-inflammatory drugs indomethacin and diclofenac. Alternatively spliced transcript variants have been described.
Source: NCBI Gene 10227 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 90 total
- Druggable target: yes
- MANE Select transcript:
NM_001146069
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:16894 |
| Approved symbol | SLC75A1 |
| Name | solute carrier family 75 member 1 |
| Location | 4p16.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | IT10C3, TETRAN, SLC75A1 |
| Ensembl gene | ENSG00000109736 |
| Ensembl biotype | protein_coding |
| OMIM | 610977 |
| Entrez | 10227 |
Gene structure
Transcript identifiers
Ensembl transcripts: 30 — 24 protein_coding, 4 retained_intron, 2 nonsense_mediated_decay
ENST00000329687, ENST00000355443, ENST00000503596, ENST00000507272, ENST00000507555, ENST00000508221, ENST00000508276, ENST00000509676, ENST00000512781, ENST00000514031, ENST00000514800, ENST00000866676, ENST00000866677, ENST00000866678, ENST00000866679, ENST00000866680, ENST00000866681, ENST00000866682, ENST00000866683, ENST00000866684, ENST00000866685, ENST00000866686, ENST00000932268, ENST00000932269, ENST00000967825, ENST00000967826, ENST00000967827, ENST00000967828, ENST00000967829, ENST00000967830
RefSeq mRNA: 4 — MANE Select: NM_001146069
NM_001120, NM_001146069, NM_001363679, NM_001410703
CCDS: CCDS3365, CCDS87203, CCDS93471
Canonical transcript exons
ENST00000355443 — 13 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000699262 | 2932600 | 2932758 |
| ENSE00000699263 | 2933106 | 2933209 |
| ENSE00002039305 | 2934769 | 2934825 |
| ENSE00003478138 | 2931227 | 2931274 |
| ENSE00003486031 | 2931825 | 2931936 |
| ENSE00003491805 | 2931555 | 2931663 |
| ENSE00003535417 | 2932045 | 2932153 |
| ENSE00003538413 | 2931061 | 2931150 |
| ENSE00003595948 | 2931375 | 2931465 |
| ENSE00003604771 | 2930567 | 2930953 |
| ENSE00003654538 | 2933753 | 2933944 |
| ENSE00003661375 | 2933567 | 2933663 |
| ENSE00003677523 | 2932351 | 2932512 |
Expression profiles
Bgee: expression breadth ubiquitous, 270 present calls, max score 98.54.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 28.3989 / max 692.2522, expressed in 1811 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 51156 | 26.3019 | 1810 |
| 51155 | 1.0057 | 419 |
| 51153 | 0.4470 | 76 |
| 51154 | 0.3688 | 77 |
| 51151 | 0.1791 | 46 |
| 51152 | 0.0965 | 29 |
Top tissues by expression
291 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right uterine tube | UBERON:0001302 | 98.54 | gold quality |
| oocyte | CL:0000023 | 98.37 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 98.03 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 97.73 | gold quality |
| granulocyte | CL:0000094 | 97.65 | gold quality |
| cerebellar cortex | UBERON:0002129 | 97.62 | gold quality |
| metanephros cortex | UBERON:0010533 | 97.16 | gold quality |
| endocervix | UBERON:0000458 | 97.15 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 97.14 | gold quality |
| right ovary | UBERON:0002118 | 97.09 | gold quality |
| left ovary | UBERON:0002119 | 96.96 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 96.94 | gold quality |
| adenohypophysis | UBERON:0002196 | 96.76 | gold quality |
| left uterine tube | UBERON:0001303 | 96.63 | gold quality |
| tibial nerve | UBERON:0001323 | 96.52 | gold quality |
| body of uterus | UBERON:0009853 | 96.51 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 96.45 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 96.36 | gold quality |
| cerebellum | UBERON:0002037 | 96.08 | gold quality |
| ectocervix | UBERON:0012249 | 95.99 | gold quality |
| right lung | UBERON:0002167 | 95.96 | gold quality |
| body of stomach | UBERON:0001161 | 95.95 | gold quality |
| secondary oocyte | CL:0000655 | 95.79 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 95.79 | gold quality |
| thyroid gland | UBERON:0002046 | 95.78 | gold quality |
| omental fat pad | UBERON:0010414 | 95.67 | gold quality |
| right frontal lobe | UBERON:0002810 | 95.66 | gold quality |
| peritoneum | UBERON:0002358 | 95.62 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 95.58 | gold quality |
| ventricular zone | UBERON:0003053 | 95.57 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9067 | yes | 14.98 |
| E-ANND-3 | yes | 10.81 |
| E-MTAB-7303 | no | 1001.99 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
7 targeting SLC75A1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-661 | 99.09 | 65.94 | 2062 |
| HSA-MIR-939-3P | 98.97 | 65.07 | 2347 |
| HSA-MIR-548Q | 98.71 | 65.35 | 563 |
| HSA-MIR-4660 | 97.79 | 67.44 | 1328 |
Literature-anchored findings (GeneRIF, showing 2)
- A BLAST search identified the possible human orthologue of Tpo1p, tetracycline transporter-like protein (TETRAN), whose overexpression in cultured human cells caused resistance to some NSAIDs, suggesting that TETRAN is an efflux pump for some NSAIDs. (PMID:17362938)
- TETRAN is a novel human organic anion transporter, and that it serves as a transporter for some NSAIDs and various other organic anions at the final excretion step. (PMID:18638446)
Cross-species orthologs
23 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | mfsd14a2 | ENSDARG00000013117 |
| danio_rerio | mfsd1l | ENSDARG00000070957 |
| danio_rerio | mfsd8l2 | ENSDARG00000076959 |
| danio_rerio | mfsd10 | ENSDARG00000086786 |
| danio_rerio | ENSDARG00000087525 | |
| mus_musculus | Mfsd10 | ENSMUSG00000001082 |
| rattus_norvegicus | Mfsd10 | ENSRNOG00000012534 |
| drosophila_melanogaster | rtet | FBGN0028468 |
| drosophila_melanogaster | CG11537 | FBGN0035400 |
| drosophila_melanogaster | CG18281 | FBGN0037003 |
| drosophila_melanogaster | CG17637 | FBGN0037004 |
| drosophila_melanogaster | CG5078 | FBGN0037005 |
| caenorhabditis_elegans | WBGENE00010182 | |
| caenorhabditis_elegans | WBGENE00010282 | |
| caenorhabditis_elegans | WBGENE00012222 | |
| caenorhabditis_elegans | WBGENE00016093 | |
| caenorhabditis_elegans | WBGENE00016094 | |
| caenorhabditis_elegans | WBGENE00016095 | |
| caenorhabditis_elegans | WBGENE00017339 | |
| caenorhabditis_elegans | WBGENE00017861 | |
| caenorhabditis_elegans | WBGENE00020798 | |
| caenorhabditis_elegans | WBGENE00021814 | |
| caenorhabditis_elegans | WBGENE00021870 |
Paralogs (6): MFSD1 (ENSG00000118855), MFSD9 (ENSG00000135953), MFSD14B (ENSG00000148110), MFSD14A (ENSG00000156875), MFSD8 (ENSG00000164073), MFSD5 (ENSG00000182544)
Protein
Protein identifiers
Solute carrier family 75 member 1 — Q14728 (reviewed: Q14728)
Alternative names: Major facilitator superfamily domain-containing protein 10, Tetracycline transporter-like protein
All UniProt accessions (6): Q14728, D6R9N3, D6RA47, D6RE79, D6RHV1, D6RIZ4
UniProt curated annotations — full annotation on UniProt →
Function. Probable organic anion transporter which may serve as a transporter for some non-steroidal anti-inflammatory drugs (NSAIDs) as well as other organic anions across the luminal membranes of renal proximal tubules at the final excretion step into the urine.
Subcellular location. Nucleus inner membrane. Cell membrane.
Tissue specificity. Expressed in luminal membrane of renal tubules (at protein level). Detected in all tissues tested with higher expression in heart, splee, kidney, leukocytes and prostate.
Similarity. Belongs to the SLC75A transporter family.
RefSeq proteins (4): NP_001111, NP_001139541, NP_001350608, NP_001397632 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR011701 | MFS | Family |
| IPR020846 | MFS_dom | Domain |
| IPR036259 | MFS_trans_sf | Homologous_superfamily |
Pfam: PF07690
UniProt features (39 total): helix 24, transmembrane region 11, strand 2, chain 1, sequence conflict 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6S4M | X-RAY DIFFRACTION | 2.4 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q14728-F1 | 92.02 | 0.87 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 110 (showing top):
GOBP_SODIUM_INDEPENDENT_ORGANIC_ANION_TRANSPORT, MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP, GOBP_ORGANIC_HYDROXY_COMPOUND_TRANSPORT, ONKEN_UVEAL_MELANOMA_UP, WATANABE_RECTAL_CANCER_RADIOTHERAPY_RESPONSIVE_UP, KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_DN, GOBP_ORGANIC_ANION_TRANSPORT, chr4p16, LIAO_METASTASIS, GOCC_APICAL_PLASMA_MEMBRANE, LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN, GRUETZMANN_PANCREATIC_CANCER_UP, IVANOVA_HEMATOPOIESIS_INTERMEDIATE_PROGENITOR, CONCANNON_APOPTOSIS_BY_EPOXOMICIN_DN, MILI_PSEUDOPODIA_CHEMOTAXIS_DN
GO Biological Process (4): apoptotic process (GO:0006915), sodium-independent organic anion transport (GO:0043252), tetracycline transmembrane transport (GO:0015904), transmembrane transport (GO:0055085)
GO Molecular Function (4): tetracycline transmembrane transporter activity (GO:0008493), obsolete organic anion transmembrane transporter activity (GO:0008514), protein binding (GO:0005515), transmembrane transporter activity (GO:0022857)
GO Cellular Component (7): nuclear inner membrane (GO:0005637), membrane (GO:0016020), cytoplasmic vesicle membrane (GO:0030659), brush border membrane (GO:0031526), nucleus (GO:0005634), plasma membrane (GO:0005886), organelle membrane (GO:0031090)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| transmembrane transport | 3 |
| membrane | 2 |
| programmed cell death | 1 |
| apoptotic signaling pathway | 1 |
| execution phase of apoptosis | 1 |
| organic hydroxy compound transport | 1 |
| transport | 1 |
| cellular process | 1 |
| alcohol transmembrane transporter activity | 1 |
| tetracycline transmembrane transport | 1 |
| binding | 1 |
| transporter activity | 1 |
| organelle inner membrane | 1 |
| nuclear membrane | 1 |
| cellular anatomical structure | 1 |
| vesicle membrane | 1 |
| cytoplasmic vesicle | 1 |
| brush border | 1 |
| apical plasma membrane | 1 |
| cell projection membrane | 1 |
| intracellular membrane-bounded organelle | 1 |
| cell periphery | 1 |
| membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
1099 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SLC75A1 | SERINC5 | Q86VE9 | 968 |
| SLC75A1 | MFSD6 | Q6ZSS7 | 677 |
| SLC75A1 | SVOPL | Q8N434 | 665 |
| SLC75A1 | SLC61A1 | Q6N075 | 632 |
| SLC75A1 | SVOP | Q8N4V2 | 628 |
| SLC75A1 | MFSD11 | O43934 | 625 |
| SLC75A1 | UNC93A | Q86WB7 | 614 |
| SLC75A1 | SPNS3 | Q6ZMD2 | 587 |
| SLC75A1 | SPNS1 | Q9H2V7 | 572 |
| SLC75A1 | SLC33A2 | Q96ES6 | 557 |
| SLC75A1 | SLC68A1 | Q14CX5 | 549 |
| SLC75A1 | MFSD12 | Q6NUT3 | 537 |
| SLC75A1 | SLC67A2 | Q8NBP5 | 518 |
| SLC75A1 | MFSD6L | Q8IWD5 | 513 |
| SLC75A1 | MFSD2B | A6NFX1 | 513 |
IntAct
35 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MFSD10 | PECAM1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KLK6 | MFSD10 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MFSD10 | TGFBR2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CBX5 | MFSD10 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TMEM63A | AP3B1 | psi-mi:“MI:0914”(association) | 0.530 |
| TMEM63A | AP3D1 | psi-mi:“MI:0914”(association) | 0.530 |
| CHRNA4 | FZD6 | psi-mi:“MI:0914”(association) | 0.530 |
| LPAR1 | TMEM223 | psi-mi:“MI:0914”(association) | 0.530 |
| MFSD10 | PB2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| MFSD10 | F2RL1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| MFSD10 | NPSR1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| ESYT2 | psi-mi:“MI:0914”(association) | 0.350 | |
| NBAS | psi-mi:“MI:0914”(association) | 0.350 | |
| TMEM223 | psi-mi:“MI:0914”(association) | 0.350 | |
| CYP2C18 | PGRMC1 | psi-mi:“MI:0914”(association) | 0.350 |
| CHRNA3 | ENTPD6 | psi-mi:“MI:0914”(association) | 0.350 |
| SAAL1 | TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
| MFSD10 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.350 |
| FOS | ILVBL | psi-mi:“MI:0914”(association) | 0.350 |
| ATF2 | ABLIM1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (271): MFSD10 (Biochemical Activity), MFSD10 (Biochemical Activity), MFSD10 (Proximity Label-MS), MFSD10 (Proximity Label-MS), MFSD10 (Affinity Capture-MS), MFSD10 (Affinity Capture-MS), MFSD10 (Affinity Capture-MS), MFSD10 (Proximity Label-MS), MFSD10 (Affinity Capture-MS), MFSD10 (Affinity Capture-MS), MFSD10 (Proximity Label-MS), MFSD10 (Proximity Label-MS), MFSD10 (Proximity Label-MS), MFSD10 (Proximity Label-MS), MFSD10 (Proximity Label-MS)
ESM2 similar proteins: A0A3Q2HW92, A6NDV4, A6NFX1, A6QLK4, B1AWJ5, F1NCD6, F1NJ67, F1PZV2, O35308, O35595, O70461, O95907, Q08DX7, Q0IHM1, Q0P5C0, Q0P5M9, Q13286, Q14728, Q29611, Q2YDU8, Q3T9M1, Q3U481, Q501I9, Q5R8G5, Q5R9A1, Q5U419, Q60HH0, Q61124, Q66H95, Q6NUT3, Q6UXD7, Q6ZMD2, Q7RTT9, Q8BFQ6, Q8CE47, Q8NA29, Q8R0G7, Q8R139, Q8TB61, Q8VCW4
Diamond homologs: A0A0C1C354, A0A0D1DYJ6, A0A0E3D8L1, A0A0F9XXG3, A0A0N7D7C9, A0A0U5GJZ5, A0A140JWS3, A0A142I724, A0A1L9WQV4, A0A1V6PBC8, A0A1W5T3J9, A0A2I1C3U4, A0A2L0P0L8, A0A2Z1U8L7, A0A348HAX9, A0A3G1DJE2, A0A3G9H2R5, A0A411KUX1, A0A443HJZ5, A0A455ZIM6, A0A4P8DK16, A0A4Q4NMP3, A0A5B8YU71, A0A6F8RNA5, A0A6J4B6H5, A0A7L8UVD5, A0A8F4NW86, A0A8K1AW52, A1JKW8, A7MHI9, A9N7L0, B4T9U3, B4TNI8, C6DBD0, D4AXV8, D7PI13, E9R876, F2SH39, J9VHZ4, K5B8L6
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
90 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 65 |
| Likely benign | 5 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1919 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 4:2931272:CGG:C | acceptor_gain | 1.0000 |
| 4:2931273:GGC:G | acceptor_loss | 1.0000 |
| 4:2931274:GCTGG:G | acceptor_loss | 1.0000 |
| 4:2931275:C:CC | acceptor_gain | 1.0000 |
| 4:2931276:T:A | acceptor_loss | 1.0000 |
| 4:2931370:CTCA:C | donor_loss | 1.0000 |
| 4:2931371:TCA:T | donor_loss | 1.0000 |
| 4:2931372:CA:C | donor_loss | 1.0000 |
| 4:2931373:A:AC | donor_gain | 1.0000 |
| 4:2931374:C:CC | donor_gain | 1.0000 |
| 4:2931374:C:CT | donor_loss | 1.0000 |
| 4:2931554:CCCG:C | donor_gain | 1.0000 |
| 4:2931574:T:TA | donor_gain | 1.0000 |
| 4:2931575:C:A | donor_gain | 1.0000 |
| 4:2931820:CCCA:C | donor_loss | 1.0000 |
| 4:2931821:CCA:C | donor_loss | 1.0000 |
| 4:2931822:CACCT:C | donor_loss | 1.0000 |
| 4:2931823:ACCTA:A | donor_loss | 1.0000 |
| 4:2931824:CCTA:C | donor_gain | 1.0000 |
| 4:2931824:CCTAC:C | donor_loss | 1.0000 |
| 4:2931827:A:AC | donor_gain | 1.0000 |
| 4:2931828:C:CC | donor_gain | 1.0000 |
| 4:2931828:CTGAA:C | donor_gain | 1.0000 |
| 4:2931832:A:C | donor_gain | 1.0000 |
| 4:2932043:A:AC | donor_gain | 1.0000 |
| 4:2932044:C:CC | donor_gain | 1.0000 |
| 4:2932044:CTGT:C | donor_gain | 1.0000 |
| 4:2932509:CCGC:C | acceptor_gain | 1.0000 |
| 4:2932510:CGCC:C | acceptor_gain | 1.0000 |
| 4:2932595:CTTA:C | donor_loss | 1.0000 |
AlphaMissense
2859 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 4:2932480:G:C | F188L | 0.992 |
| 4:2932480:G:T | F188L | 0.992 |
| 4:2932482:A:G | F188L | 0.992 |
| 4:2933131:C:A | R116M | 0.991 |
| 4:2932672:G:C | S153R | 0.990 |
| 4:2932672:G:T | S153R | 0.990 |
| 4:2932674:T:G | S153R | 0.990 |
| 4:2932492:G:C | F184L | 0.988 |
| 4:2932492:G:T | F184L | 0.988 |
| 4:2932494:A:G | F184L | 0.988 |
| 4:2933131:C:G | R116T | 0.988 |
| 4:2933807:G:C | F39L | 0.988 |
| 4:2933807:G:T | F39L | 0.988 |
| 4:2933809:A:G | F39L | 0.988 |
| 4:2931107:G:C | S402R | 0.986 |
| 4:2931107:G:T | S402R | 0.986 |
| 4:2931109:T:G | S402R | 0.986 |
| 4:2933130:C:A | R116S | 0.986 |
| 4:2933130:C:G | R116S | 0.986 |
| 4:2931854:G:C | F295L | 0.985 |
| 4:2931854:G:T | F295L | 0.985 |
| 4:2931856:A:G | F295L | 0.985 |
| 4:2933146:G:A | S111F | 0.984 |
| 4:2933190:G:C | F96L | 0.984 |
| 4:2933190:G:T | F96L | 0.984 |
| 4:2933192:A:G | F96L | 0.984 |
| 4:2931881:G:C | F286L | 0.981 |
| 4:2931881:G:T | F286L | 0.981 |
| 4:2931883:A:G | F286L | 0.981 |
| 4:2932481:A:G | F188S | 0.980 |
dbSNP variants (sampled 300 via entrez): RS1000010069 (4:2934039 G>A), RS1000166912 (4:2930575 A>C), RS1000277392 (4:2934782 G>A,C), RS1000503473 (4:2931464 G>A,C), RS1000522141 (4:2933517 C>T), RS1000586959 (4:2934300 G>A,T), RS1001759170 (4:2934065 C>A,T), RS1002406473 (4:2933355 G>A,T), RS1002898850 (4:2935665 A>G), RS1003031049 (4:2933236 G>A), RS1003248857 (4:2936694 G>A,T), RS1003639712 (4:2934653 A>C,G), RS1004126288 (4:2934883 T>C), RS1004482687 (4:2930403 G>A,T), RS1004832015 (4:2935143 C>T)
Disease associations
OMIM: gene MIM:610977 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004691_6 | Huntington’s disease progression | 3.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0008336 | disease progression measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6067237 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.15 | Kd | 70.16 | nM | CHEMBL5653589 |
| 7.15 | ED50 | 70.16 | nM | CHEMBL5653589 |
PubChem BioAssay actives
1 with measured affinity, of 2 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148746: Binding affinity to human MFSD10 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0702 | uM |
CTD chemical–gene interactions
28 total (human), top 28 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects cotreatment, increases abundance, increases expression, decreases expression | 4 |
| Air Pollutants | decreases expression, affects expression, increases abundance | 2 |
| Arsenic | affects cotreatment, decreases expression, increases abundance, increases expression | 2 |
| Benzo(a)pyrene | decreases methylation, increases expression | 2 |
| Tretinoin | increases expression | 2 |
| Particulate Matter | decreases expression, increases abundance, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| bisphenol A | affects expression | 1 |
| beta-lapachone | decreases expression, increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| deguelin | decreases expression | 1 |
| erucylphospho-N,N,N-trimethylpropylammonium | increases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| MT19c compound | decreases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Vehicle Emissions | increases abundance, increases expression | 1 |
| Cisplatin | decreases expression | 1 |
| Estradiol | affects expression | 1 |
| Hydrogen Peroxide | affects cotreatment, decreases expression | 1 |
| Ozone | affects expression, increases abundance | 1 |
| Quercetin | increases expression | 1 |
| Selenium | increases expression | 1 |
| Theophylline | affects cotreatment, decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Valproic Acid | decreases expression, increases methylation | 1 |
| Cyclosporine | decreases expression | 1 |
| Aflatoxin B1 | increases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5651788 | Binding | Binding affinity to human MFSD10 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
3 cell lines: 2 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D4DB | HEK-MFSD10-KO-c2 | Transformed cell line | Female |
| CVCL_D4G7 | HCT116-MFSD10-KO-c18 | Cancer cell line | Male |
| CVCL_D4G8 | HCT116-MFSD10-KO-c24 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Huntington disease