SLC7A2-IT1

Summary

SLC7A2-IT1 (SLC7A2 intronic transcript 1, HGNC:54925) is a long non-coding RNA gene on chromosome 8p22.

At a glance

• Gene type: non-coding (TEC) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54925
Approved symbol	SLC7A2-IT1
Name	SLC7A2 intronic transcript 1
Location	8p22
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000279903
Ensembl biotype	TEC
RNAcentral	URS000233F0FA — lncRNA, 594 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 TEC

ENST00000623580

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000623580 — 1 exons

Exon	Start	End
ENSE00003757466	17500012	17500605

Expression profiles

Bgee: expression breadth ubiquitous, 110 present calls, max score 82.45.

Top tissues by expression

110 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.45	gold quality
skeletal muscle tissue	UBERON:0001134	77.79	gold quality
left ovary	UBERON:0002119	71.23	gold quality
ovary	UBERON:0000992	70.45	gold quality
liver	UBERON:0002107	69.20	gold quality
right ovary	UBERON:0002118	69.18	gold quality
hindlimb stylopod muscle	UBERON:0004252	65.55	gold quality
right lobe of liver	UBERON:0001114	64.62	gold quality
ectocervix	UBERON:0012249	62.00	gold quality
calcaneal tendon	UBERON:0003701	57.84	gold quality
tibial nerve	UBERON:0001323	57.61	gold quality
endometrium	UBERON:0001295	57.07	gold quality
uterine cervix	UBERON:0000002	56.70	gold quality
monocyte	CL:0000576	56.57	gold quality
islet of Langerhans	UBERON:0000006	55.88	gold quality
gall bladder	UBERON:0002110	55.69	gold quality
prefrontal cortex	UBERON:0000451	55.35	gold quality
pancreas	UBERON:0001264	54.77	gold quality
bone marrow	UBERON:0002371	54.32	silver quality
muscle of leg	UBERON:0001383	53.88	gold quality
body of pancreas	UBERON:0001150	53.48	gold quality
gastrocnemius	UBERON:0001388	53.39	gold quality
endocervix	UBERON:0000458	53.35	gold quality
tonsil	UBERON:0002372	53.34	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.99	gold quality
vermiform appendix	UBERON:0001154	52.66	gold quality
omental fat pad	UBERON:0010414	52.60	gold quality
blood	UBERON:0000178	52.24	silver quality
mucosa of stomach	UBERON:0001199	52.15	gold quality
kidney	UBERON:0002113	52.14	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.96

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.