SLC9A3R1-AS1

Summary

SLC9A3R1-AS1 (SLC9A3R1 antisense RNA 1, HGNC:55322) is a long non-coding RNA gene on chromosome 17q25.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55322
Approved symbol	SLC9A3R1-AS1
Name	SLC9A3R1 antisense RNA 1
Location	17q25.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000266036
Ensembl biotype	lncRNA
Entrez	105371893
RNAcentral	URS00026A1B09 — lncRNA, 3104 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000585285, ENST00000791003

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000585285 — 2 exons

Exon	Start	End
ENSE00002689977	74748573	74748912
ENSE00002709980	74747319	74747543

Expression profiles

Bgee: expression breadth ubiquitous, 119 present calls, max score 76.92.

Top tissues by expression

119 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	76.92	gold quality
duodenum	UBERON:0002114	75.44	gold quality
bone marrow cell	CL:0002092	73.01	gold quality
tonsil	UBERON:0002372	72.57	gold quality
skeletal muscle tissue	UBERON:0001134	70.39	gold quality
ventricular zone	UBERON:0003053	69.29	gold quality
kidney	UBERON:0002113	68.76	gold quality
bone marrow	UBERON:0002371	68.23	gold quality
placenta	UBERON:0001987	67.32	gold quality
ganglionic eminence	UBERON:0004023	67.12	gold quality
small intestine	UBERON:0002108	67.04	gold quality
cortex of kidney	UBERON:0001225	66.93	gold quality
adult mammalian kidney	UBERON:0000082	66.65	gold quality
prefrontal cortex	UBERON:0000451	65.50	gold quality
small intestine Peyer’s patch	UBERON:0003454	65.41	gold quality
liver	UBERON:0002107	64.88	gold quality
left testis	UBERON:0004533	60.58	gold quality
leukocyte	CL:0000738	60.39	gold quality
testis	UBERON:0000473	60.29	gold quality
cortical plate	UBERON:0005343	60.08	gold quality
monocyte	CL:0000576	59.90	gold quality
blood	UBERON:0000178	59.85	gold quality
frontal cortex	UBERON:0001870	59.83	gold quality
metanephros cortex	UBERON:0010533	58.86	gold quality
right testis	UBERON:0004534	58.63	gold quality
lymph node	UBERON:0000029	58.61	gold quality
primary visual cortex	UBERON:0002436	58.29	gold quality
superior frontal gyrus	UBERON:0002661	57.70	gold quality
stromal cell of endometrium	CL:0002255	57.63	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	57.59	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-MTAB-9543	yes	16.23
E-ANND-3	no	1.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.