SLC9A9-AS1

Summary

SLC9A9-AS1 (SLC9A9 antisense RNA 1, HGNC:40928) is a long non-coding RNA gene on chromosome 3q24.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40928
Approved symbol	SLC9A9-AS1
Name	SLC9A9 antisense RNA 1
Location	3q24
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000240012
Ensembl biotype	lncRNA
Entrez	100885796
RNAcentral	URS0000526B62 — lncRNA, 518 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000479030

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000479030 — 4 exons

Exon	Start	End
ENSE00001844323	143346986	143347071
ENSE00001869919	143344467	143344594
ENSE00001922890	143343350	143343614
ENSE00001943015	143342246	143342284

Expression profiles

Bgee: expression breadth broad, 98 present calls, max score 93.97.

Top tissues by expression

98 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	93.97	silver quality
colonic epithelium	UBERON:0000397	78.24	gold quality
corpus callosum	UBERON:0002336	73.25	gold quality
calcaneal tendon	UBERON:0003701	72.69	gold quality
tonsil	UBERON:0002372	68.53	gold quality
bone marrow cell	CL:0002092	66.62	silver quality
skeletal muscle tissue	UBERON:0001134	63.99	silver quality
liver	UBERON:0002107	60.91	gold quality
bone marrow	UBERON:0002371	59.52	silver quality
lymph node	UBERON:0000029	58.38	gold quality
islet of Langerhans	UBERON:0000006	57.20	gold quality
muscle of leg	UBERON:0001383	57.20	gold quality
monocyte	CL:0000576	57.14	gold quality
blood	UBERON:0000178	55.94	silver quality
adrenal tissue	UBERON:0018303	55.01	gold quality
kidney	UBERON:0002113	53.09	gold quality
placenta	UBERON:0001987	53.00	gold quality
prefrontal cortex	UBERON:0000451	52.80	gold quality
fundus of stomach	UBERON:0001160	52.46	gold quality
vermiform appendix	UBERON:0001154	52.25	gold quality
lung	UBERON:0002048	50.97	gold quality
adult mammalian kidney	UBERON:0000082	50.67	gold quality
stomach	UBERON:0000945	50.47	gold quality
body of pancreas	UBERON:0001150	50.20	gold quality
cortex of kidney	UBERON:0001225	50.08	gold quality
heart left ventricle	UBERON:0002084	49.26	gold quality
endometrium	UBERON:0001295	49.24	silver quality
heart	UBERON:0000948	48.38	gold quality
gastrocnemius	UBERON:0001388	48.18	gold quality
adrenal gland	UBERON:0002369	48.02	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.73

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.