SLC9A9-AS2

Summary

SLC9A9-AS2 (SLC9A9 antisense RNA 2, HGNC:40929) is a long non-coding RNA gene on chromosome 3q24.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40929
Approved symbol	SLC9A9-AS2
Name	SLC9A9 antisense RNA 2
Location	3q24
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000244493
Ensembl biotype	lncRNA
Entrez	106480356
RNAcentral	URS0000604BA9 — lncRNA, 327 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000490153

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000490153 — 2 exons

Exon	Start	End
ENSE00001856540	143381338	143381446
ENSE00001866790	143381944	143382161

Expression profiles

Bgee: expression breadth ubiquitous, 104 present calls, max score 78.92.

Top tissues by expression

104 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
corpus callosum	UBERON:0002336	78.92	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	73.07	gold quality
calcaneal tendon	UBERON:0003701	65.86	gold quality
bone marrow	UBERON:0002371	63.52	gold quality
bone marrow cell	CL:0002092	62.69	silver quality
lymph node	UBERON:0000029	61.79	gold quality
stromal cell of endometrium	CL:0002255	61.69	gold quality
monocyte	CL:0000576	60.52	gold quality
blood	UBERON:0000178	59.96	gold quality
prefrontal cortex	UBERON:0000451	59.66	gold quality
muscle of leg	UBERON:0001383	57.46	gold quality
superior frontal gyrus	UBERON:0002661	57.43	gold quality
right lobe of thyroid gland	UBERON:0001119	55.78	gold quality
apex of heart	UBERON:0002098	55.48	gold quality
islet of Langerhans	UBERON:0000006	54.97	gold quality
tonsil	UBERON:0002372	54.42	gold quality
cortex of kidney	UBERON:0001225	54.19	gold quality
left lobe of thyroid gland	UBERON:0001120	53.87	gold quality
endometrium	UBERON:0001295	53.67	gold quality
thyroid gland	UBERON:0002046	53.62	gold quality
liver	UBERON:0002107	53.45	gold quality
granulocyte	CL:0000094	53.42	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	53.26	gold quality
anterior cingulate cortex	UBERON:0009835	53.17	gold quality
gastrocnemius	UBERON:0001388	52.99	gold quality
right lobe of liver	UBERON:0001114	52.31	gold quality
tibial artery	UBERON:0007610	51.45	gold quality
metanephros cortex	UBERON:0010533	51.44	gold quality
popliteal artery	UBERON:0002250	51.35	gold quality
smooth muscle tissue	UBERON:0001135	51.14	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.97

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.